g.barbadense_cottongen_reftransV1_0098081, g.barbadense_cottongen_reftransV1_0098081 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0098081
Unique Name	g.barbadense_cottongen_reftransV1_0098081
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2176

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt07	chromosome	g.barbadense_cottongen_reftransV1_0098081:2..2176 . Dt07:14831940..14836732 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 3.253e-29
Identity = 81/175 (46.29%), Postives = 111/175 (63.43%), Query Frame = 2

Query:   47 TDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            T+  S++Q YGVP Y A W+P   ++SK+    +  ED  E    +       ++  + +VL+GGGGEGRSGI N I++  V+  +NSLS+QP+ +   GSDLPYRM VHP   G+ICA   SC+LF W++    E ++ G   SE+V+ +L DVGQQLAL FN EGSVLA G E
Sbjct:    8 TNQPSNMQTYGVPIYAADWIPEVDVRSKIIMDPEKSEDDDESSSSS-------SSSRSCIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPREGGLICALPNSCKLFHWEDIMSREDNQAG--ESEEVIKELRDVGQQLALAFNPEGSVLAAGAE 173

HSP 2 Score: 92.4337 bits (228), Expect = 1.085e-18
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 3

Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAK 1730
            A  +DG+LRVFKWPSM  +LNE+QAHSSVK L FS  G+FLVSLG  +CR+WDV +S  VASL+K
Sbjct:  170 AGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLGGPVCRVWDVNASAAVASLSK 234

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 7.581e-7
Identity = 22/62 (35.48%), Postives = 41/62 (66.13%), Query Frame = 3

Query: 1548 DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAK 1730
            DG LR+ +WP++ ++L+E +AH S++++DFS D +FL +  + G  RIW       +++L +
Sbjct:  143 DGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLSTLER 204

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0D2PPU8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G109900 PE=4 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.284e-97
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 2

Query:   44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            MTDTSSDLQKYGVPFYGAGW+PYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE
Sbjct:    1 MTDTSSDLQKYGVPFYGAGWIPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 176

HSP 2 Score: 132.494 bits (332), Expect = 7.574e-30
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3

Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736
            +DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN
Sbjct:  176 EDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 239

HSP 3 Score: 92.8189 bits (229), Expect = 7.118e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3

Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
            DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR
Sbjct:  240 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0D2QNQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G109900 PE=4 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 2.975e-95
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 2

Query:   44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVG 565
            MTDTSSDLQKYGVPFYGAGW+PYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVG
Sbjct:    1 MTDTSSDLQKYGVPFYGAGWIPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVG 174

HSP 2 Score: 135.191 bits (339), Expect = 8.445e-31
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 3

Query: 1539 AVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736
             VQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN
Sbjct:  174 GVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 239

HSP 3 Score: 92.8189 bits (229), Expect = 6.925e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3

Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
            DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR
Sbjct:  240 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A0B0NK76_GOSAR (SEC12-like protein 2 OS=Gossypium arboreum GN=F383_14520 PE=4 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 9.502e-95
Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 2

Query:   44 MTDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            MT+TSSDLQKYGVPFYGAGWVPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKES GNE HKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE
Sbjct:    1 MTETSSDLQKYGVPFYGAGWVPYNHIKSKLASQEKIEEDKKEEKDPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESNGNEAHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 176

HSP 2 Score: 132.109 bits (331), Expect = 8.637e-30
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 3

Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736
            +DGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN
Sbjct:  176 EDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 239

HSP 3 Score: 92.8189 bits (229), Expect = 6.800e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3

Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
            DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR
Sbjct:  240 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A061E7J2_THECC (Transducin/WD40 repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_010880 PE=4 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.162e-68
Identity = 135/169 (79.88%), Postives = 147/169 (86.98%), Query Frame = 2

Query:   65 LQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            LQKYGVPFYGAGWVPY+HI+SKLASQEK EE++ +E  PT S DDEI+T  NYVV +GGGGEGRSGIPNAIVVSHV+F SNSLS+QPV K  T SDLPYRMTVHP GDGIICA QQSCRLFEW+E + NEV  LGVKVSEKVL QLEDVGQQLAL FNSEGS+LAVGGE
Sbjct:   13 LQKYGVPFYGAGWVPYDHIRSKLASQEKNEENEDKE--PTQSKDDEISTSQNYVVFSGGGGEGRSGIPNAIVVSHVDFASNSLSEQPVFKLGTDSDLPYRMTVHPRGDGIICALQQSCRLFEWEEPQDNEVQNLGVKVSEKVLTQLEDVGQQLALRFNSEGSILAVGGE 179

HSP 2 Score: 125.946 bits (315), Expect = 1.038e-27
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 3

Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGSGLCRIWDVTSSKVVASLAKGN 1736
            +DGSLRVFKWPSM+I+LNEAQAHSSVK+LDFSCDGKFLVSLGSGLCRIWDV SSKVVASLAKGN
Sbjct:  179 EDGSLRVFKWPSMEIILNEAQAHSSVKDLDFSCDGKFLVSLGSGLCRIWDVESSKVVASLAKGN 242

HSP 3 Score: 79.7221 bits (195), Expect = 1.505e-12
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 3

Query: 2052 DEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
            DEVFAFCRFS+INDK+P LYIAAVTD+GG++LT+NTTTWKR
Sbjct:  243 DEVFAFCRFSKINDKDPVLYIAAVTDHGGNVLTWNTTTWKR 283

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V4UGR1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015444mg PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.067e-51
Identity = 105/181 (58.01%), Postives = 129/181 (71.27%), Query Frame = 2

Query:   47 TDTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
             + S +LQKYGVP YGAGWVPY+ +        K ++D  +E+D   S D+ +    +      YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV +  T SDLPYRM +HPHGDGIICA Q SCRLFEW E E  E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E
Sbjct:    7 NEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187

HSP 2 Score: 92.0485 bits (227), Expect = 4.472e-17
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 3

Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGNVS 1742
            A  ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G  R+WD+ SS V   LAK NVS
Sbjct:  184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVTTPLAKENVS 253

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V4U6B4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015444mg PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.954e-51
Identity = 105/180 (58.33%), Postives = 129/180 (71.67%), Query Frame = 2

Query:   50 DTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            + S +LQKYGVP YGAGWVPY+ +        K ++D  +E+D   S D+ +    +      YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV +  T SDLPYRM +HPHGDGIICA Q SCRLFEW E E  E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E
Sbjct:    8 EESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187

HSP 2 Score: 88.9669 bits (219), Expect = 6.695e-16
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 3

Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736
            A  ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G  R+WD+ SS V   LAK N
Sbjct:  184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVTTPLAKEN 251

HSP 3 Score: 62.7734 bits (151), Expect = 3.188e-7
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 3

Query: 2049 QDEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
             DE+FA CRFS +N+++  LYIAA+TD G SI+T+NTTTWKR
Sbjct:  251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: A0A067FMK1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015490mg PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.358e-50
Identity = 105/180 (58.33%), Postives = 129/180 (71.67%), Query Frame = 2

Query:   50 DTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            + S +LQKYGVP YGAGWVPY+ +        K ++D  +E+D   S D+ +    +      YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV +  T SDLPYRM +HPHGDGIICA Q SCRLFEW E E  E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E
Sbjct:    8 EESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187

HSP 2 Score: 88.9669 bits (219), Expect = 1.485e-15
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 3

Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736
            A  ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G  R+WD+ SS V   LAK N
Sbjct:  184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN 251

HSP 3 Score: 63.1586 bits (152), Expect = 3.152e-7
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 3

Query: 2049 QDEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
             DE+FA CRFS +N+++  LYIAA+TD G SI+T+NTTTWKR
Sbjct:  251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: V4TLY2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015444mg PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.384e-50
Identity = 105/180 (58.33%), Postives = 129/180 (71.67%), Query Frame = 2

Query:   50 DTSSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLN------YVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            + S +LQKYGVP YGAGWVPY+ +        K ++D  +E+D   S D+ +    +      YVVLAGGGG G SGI NA+++SH +F SNSLSDQPV +  T SDLPYRM +HPHGDGIICA Q SCRLFEW E E  E+ +LGVK+SEKVL QLE+VGQQLALTF+SEG++ A G E
Sbjct:    8 EESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE 187

HSP 2 Score: 89.3521 bits (220), Expect = 1.307e-15
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 3

Query: 1536 AAVQDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736
            A  ++G+LRVFKWPS++I+LNE++AH+SVK+L FS DGKFLVSLG+ G  R+WD+ SS V   LAK N
Sbjct:  184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVTTPLAKEN 251

HSP 3 Score: 63.1586 bits (152), Expect = 3.322e-7
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 3

Query: 2049 QDEVFAFCRFSQINDKNPHLYIAAVTDYGGSILTYNTTTWKR 2174
             DE+FA CRFS +N+++  LYIAA+TD G SI+T+NTTTWKR
Sbjct:  251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: B9SJ58_RICCO (Prolactin regulatory element-binding protein, putative OS=Ricinus communis GN=RCOM_0843720 PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.228e-49
Identity = 107/172 (62.21%), Postives = 117/172 (68.02%), Query Frame = 2

Query:   56 SSDLQKYGVPFYGAGWVPYNHIKSKLASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            S   QKYGVPFY A WVPY  ++SKL S                 ND E      YV+LAGGGGEGRSGIPNA+V+S  +FT NSLS QPV K  TGSDLPYRM VHP GDG++CA   SCR FEW E + NE HKLG+K SEK L QLEDVGQQLAL FNSE S LAVGGE
Sbjct:    9 SLSFQKYGVPFYSAAWVPYKLVRSKLQSSHSDH-----------ENDHEEIADQYYVLLAGGGGEGRSGIPNALVLSRFDFTFNSLSPQPVAKLGTGSDLPYRMVVHPGGDGLVCALPNSCRFFEWDEVKDNEAHKLGLKESEKALTQLEDVGQQLALAFNSESSALAVGGE 169

HSP 2 Score: 91.2781 bits (225), Expect = 2.010e-16
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 3

Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736
            +DG LRVFKWPSM+I LNEA+AH S+K+L FS DGKFLVSLG  G  R+WDVTSS  VASL+K N
Sbjct:  169 EDGRLRVFKWPSMEIFLNEAEAHPSLKDLCFSPDGKFLVSLGGRGPGRVWDVTSSTAVASLSKEN 233

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Match: B9HW60_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12200g PE=4 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.765e-47
Identity = 104/177 (58.76%), Postives = 131/177 (74.01%), Query Frame = 2

Query:   65 LQKYGVPFYGAGWVPYNHIKSKL--------ASQXXXXXXXXXXXXPTPSNDDEITTPLNYVVLAGGGGEGRSGIPNAIVVSHVNFTSNSLSDQPVVKHETGSDLPYRMTVHPHGDGIICAFQQSCRLFEWKESEGNEVHKLGVKVSEKVLIQLEDVGQQLALTFNSEGSVLAVGGE 571
            LQKYGVP Y A W+PY  ++SKL        +S+++ ++ ++EE+ P PS     ++  +YVVLAGGGGEG SGIPNA+++S  +F+SNSL+ QPV K   GS LPYRM VHP GDG+ICAF  SCR F+W E + NE HKLG+K S+KVL QLEDVGQQLAL FNS+ SVLAVGGE
Sbjct:   12 LQKYGVPLYSAAWLPYKELRSKLQPRDDHVDSSKQQEQQQEEEEEIPKPS----ASSHEHYVVLAGGGGEGSSGIPNAVLLSCFDFSSNSLASQPVAKLGLGSQLPYRMVVHPGGDGVICAFPSSCRFFDWDEVKDNEDHKLGLKPSKKVLTQLEDVGQQLALAFNSDSSVLAVGGE 184

HSP 2 Score: 90.8929 bits (224), Expect = 3.076e-16
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 3

Query: 1545 QDGSLRVFKWPSMKIVLNEAQAHSSVKNLDFSCDGKFLVSLGS-GLCRIWDVTSSKVVASLAKGN 1736
            +DG+LRVFKWP M+I+LNE QAH+S+K+L FS DGKFLVS+G   L R+WDVTSS  VASL K N
Sbjct:  184 EDGNLRVFKWPGMEIILNETQAHASLKDLCFSPDGKFLVSMGQRDLGRVWDVTSSTAVASLPKEN 248

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
STLP2_ARATH	3.253e-29	46.29	SEC12-like protein 2 OS=Arabidopsis thaliana GN=ST...	[more]
PHF1_ARATH	7.581e-7	35.48	SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0098081 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2PPU8_GOSRA	8.284e-97	99.43	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QNQ4_GOSRA	2.975e-95	99.43	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NK76_GOSAR	9.502e-95	98.30	SEC12-like protein 2 OS=Gossypium arboreum GN=F383...	[more]
A0A061E7J2_THECC	1.162e-68	79.88	Transducin/WD40 repeat-like superfamily protein, p...	[more]
V4UGR1_9ROSI	1.067e-51	58.01	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4U6B4_9ROSI	3.954e-51	58.33	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067FMK1_CITSI	1.358e-50	58.33	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4TLY2_9ROSI	1.384e-50	58.33	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
B9SJ58_RICCO	2.228e-49	62.21	Prolactin regulatory element-binding protein, puta...	[more]
B9HW60_POPTR	7.765e-47	58.76	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23284	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	coord: 59..176 coord: 1..24

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0098081 ID=g.barbadense_cottongen_reftransV1_0098081; Name=g.barbadense_cottongen_reftransV1_0098081; organism=Gossypium barbadense; type=contig; length=2176bp
GTAAAAGCCTAAATCCTCCTTTGTTCTAACGCAAATTTGAATCATGACAG
ACACCTCCTCCGATCTCCAAAAATACGGCGTGCCGTTTTACGGAGCCGGA
TGGGTTCCTTACAACCACATCAAATCCAAGCTCGCCTCACAAGAAAAGAT
TGAAGAGGATAAGAAAGAAGAAAAAGATCCAACTCCATCCAACGATGACG
AGATCACTACACCCCTAAACTACGTCGTTCTCGCTGGCGGTGGCGGTGAA
GGCCGTAGTGGCATTCCCAATGCAATCGTTGTTTCCCACGTTAATTTCAC
CTCCAATTCTCTCTCCGATCAACCTGTGGTTAAGCATGAAACTGGTTCTG
ATTTGCCTTATCGAATGACTGTTCATCCGCATGGAGATGGCATTATCTGT
GCCTTTCAACAGAGCTGCAGGTTGTTTGAGTGGAAAGAATCTGAGGGAAA
TGAAGTCCACAAACTGGGTGTCAAGGTATCAGAGAAAGTTCTGATCCAGT
TAGAGGATGTTGGGCAACAGTTGGCACTGACATTTAATAGTGAGGGTTCT
GTACTGGCTGTTGGTGGTGAGGTAGAGTGTCCCTCCCATTTTTCAATTTG
TTGGATTAAGTTTGTTGCATTATTCATCACTAACCAAAGGGGGAAAACTA
TTGCACTTGCTATTGCACAAATCATCTGAAAATGATGCAAAAGTCGAGCC
GCACATTTTCCTATAAAATTAAAGAGCATATGCATATTGGCATATGATGA
ATCACATTCGGCAACAGGCAGCCAGGTTATCTTCATGGTTAGGCTTGGGT
TTTGAAAAGATATATTGACACCAGAGCTATTACTTTATGGTATTTTTTTA
TTTCAGTTTTATTTACTAATTATTAGACATATGAGTGGATAGCTAGGATT
ATAACTTATAAGTTATCTCTAGAGATTTAATCTAGGCTATGATTAAATTA
TTATTTGTAAACCCGCTTATAAATAAGCTGTAAAGTAGATTTATGGCCAC
CTTATGATTTTCTTTAATTAATAGACTTTATAAACTAGAGTTTTTTTTTA
TAACCCTACGTTTTTCTAGAGTTCTGACTTCTATCTTACACATTTTCATC
CTTTAGTTCTATTGGTTTGCTGTTCTTTTCTTCCTAAACCACACCATTAT
ATAAGTTTAACTTGACAATGAGGGGCGGGTGGAATAGTGAGAGAAACAAA
GATATTAACGTCACCAGAATGTATGACAATTTATTGACCTTTATTTTGTA
CCCTTTCCAGTAGCGTCCTTGTTTTTCTTTTTGATGCCATGGTGGAAGTG
ATAGATTATACTGGGGATTTCATATTTCAGACTTGCCTACCCATTAAAAG
GCAGATAATAGCAAGTTATAGGATCTTACTTTTTTGTCAACTTTTGGATT
GAAGGGCCAACTGTTTCCATATCTGTCTCTTAGTTTCACTTTCTCAATTC
ACCATTTTGTGCCTAATGCATTATACCTTTCTTTTAAAAGGAAATAAAAA
TTGTGCAGCAATATGCCATATGATGCTCTGATTTTGCTGCAGTACAGGAT
GGCAGTTTAAGGGTTTTCAAGTGGCCTAGCATGAAAATAGTTCTCAACGA
AGCCCAGGCTCATTCTTCTGTTAAGAACTTGGATTTTAGCTGTGATGGAA
AATTTCTTGTCTCACTGGGAAGTGGCCTTTGTAGGATTTGGGATGTAACT
TCGTCAAAAGTTGTTGCTTCTCTGGCAAAGGGAAATGTGAGTGAATGAAT
CAAAGTTTTTTAATAAGTGAAGCTTTTCTTTAGTTATTACGAGTTTTGCC
GCTGTTAGCACTAGGTTTTCTCGCTATTGTCCATATTATTAGCTTTATGT
GCATACCTCTCTGTCTTTGATGTTGTAAAAAGAAGCGTTATGCAACCATC
TAATAATTTAGTGAAATAGCTGAAGCCTTTTTTCAGATTTCTTGCAGACA
TTAAATGATAAGGGAATTTTCAATATTTTCTGATGATTAAAGTTGATGAT
TCCTCTCTGTATTGGGTTACAACTGGTTTATTTTGTTCACATGAACTACA
GGATGAGGTTTTTGCCTTCTGCAGATTTTCTCAAATTAATGATAAGAATC
CACATCTGTATATTGCTGCAGTCACAGACTATGGTGGAAGTATTTTAACA
TATAACACAACCACATGGAAAAGAAT

Search form

g.barbadense_cottongen_reftransV1_0098081, g.barbadense_cottongen_reftransV1_0098081 (contig) Gossypium barbadense

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