g.barbadense_cottongen_reftransV1_0098041, g.barbadense_cottongen_reftransV1_0098041 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0098041
Unique Name	g.barbadense_cottongen_reftransV1_0098041
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2028

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt09	chromosome	g.barbadense_cottongen_reftransV1_0098041:1..2028 . Dt09:49338734..49345360 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.933e-38
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFF FL+I+GVGYKA   A+G +L+LKLG+SHE+ L + P+VRVFC K N++CCTG+D Q+V QFAA V+SCKPPEVYKGKGI Y +E+I
Sbjct:    1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGMDHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEII 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_LACSS (50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplF PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.156e-20
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1

Query: 1249 LILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDE 1536
            +IL + E  F + L ++GVGY  RA+ +G+ L L +GYSH VE+  P  V V    N  +  +G+ KQ+V QFAA +R  +PPE YKGKGI YTDE
Sbjct:   74 MILGVTEG-FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQKVGQFAAEIRDVRPPEPYKGKGIRYTDE 166

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_MYCPE (50S ribosomal protein L6 OS=Mycoplasma penetrans (strain HF-2) GN=rplF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.504e-19
Identity = 48/96 (50.00%), Postives = 61/96 (63.54%), Query Frame = 1

Query: 1255 LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            LI + +   + LKIVGVGYKA     G  + L LGYSH ++L IP  + V C +   V  TG DK  V QFAA +RS +PPE YKGKG+ Y++EVI
Sbjct:   77 LIGVNSGHTKKLKIVGVGYKA--AVNGNKINLNLGYSHPIDLEIPAGLNVTCPQATEVVITGADKAVVGQFAAVIRSKRPPEPYKGKGVAYSNEVI 170

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_SULNB (50S ribosomal protein L6 OS=Sulfurovum sp. (strain NBC37-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.517e-19
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1

Query: 1252 ILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            I++ ++  + + L+I GVGY  RA  EG+ L L+LG+SH+V   IP  + +   KN ++  +G DKQ V Q AA +R+ +PPE YKGKG+ YTDEVI
Sbjct:   75 IMVGLDKGYSKSLEINGVGY--RAAVEGKTLKLQLGFSHDVNFEIPEGLDIKVDKN-IITVSGTDKQAVGQAAAEIRAYRPPEPYKGKGVKYTDEVI 168

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_BEII9 (50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.652e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1

Query: 1216 RIRIA*KITRLLI---LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            + R A  +TR ++   +I +   F R L+I GVGYKA    +G+ L L LGYSH++   IP  + +   K   V  TG+DKQRV Q AA +R+ +PPE YKGKG+ Y  E I
Sbjct:   60 KARAAWGMTRSIVNNLVIGVSQGFERKLEITGVGYKA--AVQGKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQRVGQIAAEIRALRPPEPYKGKGVKYAGEFI 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.018e-19
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1

Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            F R L++VGVGY  RA  +G  L L +GYSH VE+  PP +++    NNV+  +G+DK+ V   AA +R+ +PPE YKGKGI Y  E +
Sbjct:   83 FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAARIRAVRPPEPYKGKGIRYVGEQV 169

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_FERNB (50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.233e-19
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 1

Query: 1234 KITRLLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            ++ R ++L + E  F + L+IVGVGY  RA+ +G  L + LGY+H+VE  +P  V+V     N +  +G+DKQRV Q AA +R  + P  Y GKGI Y DEV+
Sbjct:   77 RLIRNMVLGVTEG-FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQRVGQVAADIRKWREPNPYSGKGIKYVDEVL 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_MESFL (50S ribosomal protein L6 OS=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) GN=rplF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.738e-19
Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 1

Query: 1252 ILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            +LI +   F + L I GVGY  RA   G  L L LGYSH VE TIP  + V C K   +  +G+DKQ V Q AA +RS + PE YKGKGI Y+DE+I
Sbjct:   76 MLIGVSEGFKKTLDINGVGY--RAALAGSKLNLSLGYSHPVEYTIPQGITVECPKPTQIIISGIDKQVVGQVAAEIRSYRRPEPYKGKGIKYSDEII 170

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.098e-18
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1

Query: 1276 FFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            F + L +VGVGY  RA  +G+ L L LG+SH V++ IP +++V   +N  +  +G DK  + QFAATVR  +PPE YKGKG+ Y+DE++
Sbjct:  126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIV 212

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Match: RL6_CYAP8 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 8801) GN=rplF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.098e-18
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1

Query: 1237 ITRLLILIIMEA---KFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDE 1536
            +TR L+  ++E     F + L I GVGY  RA+ +G  L L +GYS  VE+T+P  ++V    N +V  +G+DK+ V   +A +R+ +PPEVYKGKGI Y+DE
Sbjct:   67 LTRTLVANMVEGVSKGFEKRLSIQGVGY--RAQVQGTKLTLNVGYSKPVEMTMPAGIQVAVENNTLVIVSGIDKEIVGNVSAEIRAVRPPEVYKGKGIRYSDE 167

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0D2S0T6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_006G223700 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 5.568e-56
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1

Query: 1246 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI
Sbjct:   42 LLILIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 140

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A061ES89_THECC (Ribosomal protein L6 family protein OS=Theobroma cacao GN=TCM_020231 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.045e-54
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0B0N8R6_GOSAR (50S ribosomal L6 OS=Gossypium arboreum GN=F383_04452 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 7.078e-53
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKI GVGYKARAEAEGRLLFLKLGYSHEVEL +PPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI
Sbjct:    1 MEAKFFRFLKIFGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LIJ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16278 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52
Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: B9SNA1_RICCO (50S ribosomal protein L6, putative OS=Ricinus communis GN=RCOM_0174250 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.448e-52
Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAE+EGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A067LD45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00217 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.651e-52
Identity = 87/93 (93.55%), Postives = 92/93 (98.92%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            M+AKFFRFLKIVGVGYKARAEAEGRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MDAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: K7KX08_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.148e-52
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 1

Query: 1255 LIIMEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            L +MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI
Sbjct:   21 LALMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 116

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A0A0A0KJ40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502670 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.080e-51
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DKQRVHQFAA VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: A9PDZ0_POPTR (Ribosomal protein L6 OS=Populus trichocarpa GN=POPTR_0007s12890g PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.332e-51
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELT+PPAVRVFCFKNNVVCCTG+DK RVHQFAA+VRSCKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKGRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Match: I1KDT7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.471e-51
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1

Query: 1264 MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTIPPAVRVFCFKNNVVCCTGLDKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVI 1542
            MEAKFFRFLKIVGVGYKARAEA GRLL+LKLGYSHEVELT+PPAVRVFCFKNNV+CCTG+DKQRVHQFAATVR+CKPPEVYKGKGIMY DEVI
Sbjct:    1 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGIDKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RM06_MARPO	4.933e-38	66.67	60S ribosomal protein L6, mitochondrial OS=Marchan...	[more]
RL6_LACSS	5.156e-20	47.92	50S ribosomal protein L6 OS=Lactobacillus sakei su...	[more]
RL6_MYCPE	1.504e-19	50.00	50S ribosomal protein L6 OS=Mycoplasma penetrans (...	[more]
RL6_SULNB	1.517e-19	46.39	50S ribosomal protein L6 OS=Sulfurovum sp. (strain...	[more]
RL6_BEII9	1.652e-19	43.75	50S ribosomal protein L6 OS=Beijerinckia indica su...	[more]
RL6_SYNJA	8.018e-19	47.19	50S ribosomal protein L6 OS=Synechococcus sp. (str...	[more]
RL6_FERNB	8.233e-19	43.69	50S ribosomal protein L6 OS=Fervidobacterium nodos...	[more]
RL6_MESFL	8.738e-19	50.52	50S ribosomal protein L6 OS=Mesoplasma florum (str...	[more]
RK6_ARATH	1.098e-18	47.19	50S ribosomal protein L6, chloroplastic OS=Arabido...	[more]
RL6_CYAP8	1.098e-18	43.69	50S ribosomal protein L6 OS=Cyanothece sp. (strain...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0098041 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2S0T6_GOSRA	5.568e-56	96.97	Uncharacterized protein (Fragment) OS=Gossypium ra...	[more]
A0A061ES89_THECC	8.045e-54	97.85	Ribosomal protein L6 family protein OS=Theobroma c...	[more]
A0A0B0N8R6_GOSAR	7.078e-53	96.77	50S ribosomal L6 OS=Gossypium arboreum GN=F383_044...	[more]
A0A067LIJ8_JATCU	4.448e-52	93.55	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9SNA1_RICCO	4.448e-52	93.55	50S ribosomal protein L6, putative OS=Ricinus comm...	[more]
A0A067LD45_JATCU	5.651e-52	93.55	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
K7KX08_SOYBN	6.148e-52	90.63	Uncharacterized protein OS=Glycine max PE=3 SV=1	[more]
A0A0A0KJ40_CUCSA	1.080e-51	93.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A9PDZ0_POPTR	1.332e-51	94.62	Ribosomal protein L6 OS=Populus trichocarpa GN=POP...	[more]
I1KDT7_SOYBN	1.471e-51	92.47	Uncharacterized protein OS=Glycine max PE=3 SV=1	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 58..133
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..38
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..57
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.575

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0098041 ID=g.barbadense_cottongen_reftransV1_0098041; Name=g.barbadense_cottongen_reftransV1_0098041; organism=Gossypium barbadense; type=contig; length=2028bp
GTGTATCTAAAAAAATTTCCCTCTTATCTCTCTTAACGCATCCCCGCTGC
CACCACTCTGTCCCAGCTTCCTCCAGTGGCTGATCTAATCCCTTCTTGCA
TTCAAGTTTCCAAGAGACCCAGCAAATTAAATAAGGTAAATATTGAAACC
CTAAACGTATTTTGAGGATTGATTTCTACTTGAGATTTTGAGTTATTTAC
TCTACTATATTTTCTGTTTTCGATCCTACTTCTTGCTACTCTATCTCATC
GATTTTTTTTAAAAGCTACGGGATTAGTTGAAATAGCAGACTATTATCGC
CCTTTTTCTCCTTACACTGCTATTTGGGGCCGCGATTTGCTGCCATTGAT
GTGATTTTATCCCTCACCGCTGTTGAGTCTTTAGCGGGTGCCACTTTTTG
AAAACCCTAGTATTGATGTCAAAATGATGTAACTTTTTTTTATGAAATCT
GGACTTAGTTTCACCTTTGTTGAAATGCCATTAATTTAACTCTTTAAAGT
ATTTATTTTTTGAATTATATCTTATCTGTGAACTTGCCTTTGCCCTGTCA
TTGCTATTTTTACATTAAGATCCTTTGACAATTCAGGAGCTCTGGTTGTT
GCTTGGCTGCCTTTGCACCTGCTTATGGTGCTATTGAATCGAGGCAAGCT
CAAGCCATGAGAAGCTAAAGTTTAAGTGAAGCTTGAGTTTAGTCGAGTTC
CATTTTTAGACCTTGAACTTTTACCGTTAGAATTGATTAATCTCGCTTGA
GTCTGATTCTTATGCTAAATTTCAAATCTGATTACTTATGGTTGAACTTG
AATTTAAGTTAGAATTGAGATTTTTCAGTATTAATAAGGAATAGAAAGAC
CCGATTAGACTCACAAGTTACTCACCTAAAGTATTAGGGTGTTCAAATTC
GGCCCATACCATAACTTAAAGCTAACTTGCTAATGATCGAGACAAATTCG
ATATTTTGTAAATTGAACTTGAGTAGCTTGTGAGCACTGGTGTCTCATTT
ACATCTTACTATGAGTACATCTTAAGATCCTTGGACAACTATCCTTTTGC
TTGAATTCCGTTTCAGGATCAAATTTAGGTCAAATAATAGAGAACCCATT
AATTAGTTTCTGTGTTGGAACTTTGACTTTGCAATCAAGTATTTGAACGG
GCATTGCTGAAACTATTGGGGTAGGGAGAGGGTGGCAAAGTCTAAACAGT
AAACCATGTATTTATCGGATTCGGATAGCATGAAAAATAACCAGGTTGTT
GATTTTGATCATCATGGAAGCTAAATTCTTTCGCTTTCTTAAAATTGTCG
GAGTTGGTTACAAAGCCAGAGCTGAAGCCGAGGGAAGACTCTTATTTCTG
AAACTAGGATACAGTCATGAGGTTGAACTCACCATTCCTCCTGCCGTCCG
CGTTTTCTGCTTCAAAAACAATGTTGTTTGCTGCACTGGACTCGACAAGC
AAAGGGTGCATCAATTTGCCGCTACAGTTCGAAGTTGCAAGCCTCCAGAA
GTTTACAAAGGCAAAGGTATAATGTACACTGATGAAGTTATCAAGAAAAA
ACAAGGTAAAAAATCAAAATGATTTGTTGAAGTGCTTGATTTTTACTTGC
CTTTTTGTTAGTTGTATTGCAGTGTCTCATTTTGTATTAACTTGGTTGAA
TACCCAAACAATGTAGGCATGTTGGAACCTATAACATCTGTTCAACAAAA
TTTTAGGGTCATTGTCTTCAATAAACCACTTATTTTGATGTGTTTGATCG
ATTATTTTCTGAATCAAAATTGGATGATAAGTGATTCTAAAGCTGGTTAT
TTTTCCAGACTTATGGAGTTTGAGGTTATGTTTCCGATTTTTCTGGACAA
TTGTTCGGATATGGGCGTAGAGCATGAGACTCGAGTATATTTGTGTTAGA
CACATGTTCCACCGAATGTTAGTTTCTGTATTTGAAGCTAGTATACCTGA
ATCCGGAACACATACTCGTATATGTAGCTGCAGAATTGAAAGCATAAATA
AAACAACTCCGTGCAAATAATAATACAG

Search form

g.barbadense_cottongen_reftransV1_0098041, g.barbadense_cottongen_reftransV1_0098041 (contig) Gossypium barbadense

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