g.barbadense_cottongen_reftransV1_0097852, g.barbadense_cottongen_reftransV1_0097852 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097852
Unique Name	g.barbadense_cottongen_reftransV1_0097852
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3708

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Match: HEM4_ARATH (Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana GN=UROS PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 2.160e-66
Identity = 112/161 (69.57%), Postives = 134/161 (83.23%), Query Frame = -1

Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313
            P+VVVTRERGKN ++I AL ++GI+ LELPLIQH++GPD DRL SVL++ +FDWI+ITSPEAGSVFLEAWK A +P V+IGVVGAGTA +FE   +S+   LHVAF PSKATGKVLASELP    +R +VLYPAS KA N+I EGLS RGF+V+RLNTYTT
Sbjct:   65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLNDKSFDWIIITSPEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTT 225

HSP 2 Score: 76.2554 bits (186), Expect = 2.453e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            R+W++LI   + WSN VACIGETTASAA+RLGL+NVY+P +PGL+G
Sbjct:  254 RAWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEG 299

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Match: HEM4_ORYSJ (Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=UROS PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.760e-62
Identity = 106/161 (65.84%), Postives = 123/161 (76.40%), Query Frame = -1

Query: 1831 PKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2313
            P VVVTRERGKN KLI AL +H +  LELPLI+H +GPD+DRL +VL +  FDWI ITSPEA +VFLE WKAAG P VRI VVGAGT  +F+ + Q +  SL VAF+PSKA GK LASELP      C VLYPASAKA +EI+ GLS+RGF+V RLNTYTT
Sbjct:   47 PDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLRDEKFDWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTT 207

HSP 2 Score: 76.6406 bits (187), Expect = 1.391e-13
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            R+W+NL S+ D+W NA+ACIGETTASAAK+ GL+++Y+P  PGLDG
Sbjct:  236 RAWLNLASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTPGLDG 281

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A0B0PLT5_GOSAR (Uroporphyrinogen-III synthase, chloroplastic-like protein OS=Gossypium arboreum GN=F383_06245 PE=4 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.015e-113
Identity = 193/195 (98.97%), Postives = 194/195 (99.49%), Query Frame = -1

Query: 1831 QLQTRISFSRARIGAXXXXXXXXSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLS-ETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2412
            QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLS ETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGN+RCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT
Sbjct:   22 QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSAETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNKRCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 216

HSP 2 Score: 100.908 bits (250), Expect = 2.302e-19
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = -1

Query:  940 CYRSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1083
              RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG
Sbjct:  243 AVRSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 290

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A0D2TNG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209500 PE=4 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 2.679e-111
Identity = 188/194 (96.91%), Postives = 189/194 (97.42%), Query Frame = -1

Query: 1831 QLQTRISFSRARIGAXXXXXXXXSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2412
            QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQH QGPDSDRL SVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENL Q SKQSLHVAFAPSKATGKVLASELPMDGN+RCTVLYPAS KASNEIEEGLSHRGFQVLRLNTYTT
Sbjct:   22 QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHLQGPDSDRLASVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLKQPSKQSLHVAFAPSKATGKVLASELPMDGNKRCTVLYPASVKASNEIEEGLSHRGFQVLRLNTYTT 215

HSP 2 Score: 103.219 bits (256), Expect = 3.635e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG
Sbjct:  244 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 289

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A0D2QJX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209500 PE=4 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 1.323e-109
Identity = 188/195 (96.41%), Postives = 189/195 (96.92%), Query Frame = -1

Query: 1831 QLQTRISFSRARIGAXXXXXXXXSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLS-ETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2412
            QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQH QGPDSDRL SVLS ETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENL Q SKQSLHVAFAPSKATGKVLASELPMDGN+RCTVLYPAS KASNEIEEGLSHRGFQVLRLNTYTT
Sbjct:   22 QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHLQGPDSDRLASVLSAETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLKQPSKQSLHVAFAPSKATGKVLASELPMDGNKRCTVLYPASVKASNEIEEGLSHRGFQVLRLNTYTT 216

HSP 2 Score: 103.219 bits (256), Expect = 3.604e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG
Sbjct:  245 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 290

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A0D2UR78_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209500 PE=4 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.205e-108
Identity = 187/194 (96.39%), Postives = 188/194 (96.91%), Query Frame = -1

Query: 1831 QLQTRISFSRARIGAXXXXXXXXSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2412
            QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQH QGPDSDRL SVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENL Q SKQSLHVAFAPSKATGKVLASELPMDGN+RCTVLYPAS KASNEI EGLSHRGFQVLRLNTYTT
Sbjct:   22 QLQTRISFSRARIGASSTSSPSTSQVIQHASSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHLQGPDSDRLASVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLKQPSKQSLHVAFAPSKATGKVLASELPMDGNKRCTVLYPASVKASNEI-EGLSHRGFQVLRLNTYTT 214

HSP 2 Score: 103.219 bits (256), Expect = 4.046e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG
Sbjct:  243 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 288

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A061FB29_THECC (Uroporphyrinogen-III synthase family protein isoform 5 OS=Theobroma cacao GN=TCM_033898 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.374e-99
Identity = 166/195 (85.13%), Postives = 178/195 (91.28%), Query Frame = -1

Query: 1831 QLQTRISFSRARIGAXXXXXXXXSQVIQHA-SSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2412
            QL +RISFS +RIGASS+S  S  QVIQH  +SNPKVVVTRERGKN+KLIDALAEHGINCLELPLIQH+QGPD DRL SVLSETAFDWI+ITSPEAGSVFLEAWKAAGTP+VR+GVVGAGTASIF+NL QSSK SL VAFAPSKATGK+LASELP DGN RCTVLYPAS KASNEIEEGLS RGFQV+RLNTYTT
Sbjct:   26 QLHSRISFSPSRIGASSSSLTS--QVIQHTPTSNPKVVVTRERGKNSKLIDALAEHGINCLELPLIQHTQGPDFDRLASVLSETAFDWIIITSPEAGSVFLEAWKAAGTPSVRVGVVGAGTASIFDNLMQSSKHSLDVAFAPSKATGKILASELPKDGNRRCTVLYPASVKASNEIEEGLSSRGFQVMRLNTYTT 218

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A061FC01_THECC (Uroporphyrinogen-III synthase family protein isoform 1 OS=Theobroma cacao GN=TCM_033898 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 3.812e-98
Identity = 166/195 (85.13%), Postives = 178/195 (91.28%), Query Frame = -1

Query: 1831 QLQTRISFSRARIGAXXXXXXXXSQVIQHA-SSNPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2412
            QL +RISFS +RIGASS+S  S  QVIQH  +SNPKVVVTRERGKN+KLIDALAEHGINCLELPLIQH+QGPD DRL SVLSETAFDWI+ITSPEAGSVFLEAWKAAGTP+VR+GVVGAGTASIF+NL QSSK SL VAFAPSKATGK+LASELP DGN RCTVLYPAS KASNEIEEGLS RGFQV+RLNTYTT
Sbjct:   26 QLHSRISFSPSRIGASSSSLTS--QVIQHTPTSNPKVVVTRERGKNSKLIDALAEHGINCLELPLIQHTQGPDFDRLASVLSETAFDWIIITSPEAGSVFLEAWKAAGTPSVRVGVVGAGTASIFDNLMQSSKHSLDVAFAPSKATGKILASELPKDGNRRCTVLYPASVKASNEIEEGLSSRGFQVMRLNTYTT 218

HSP 2 Score: 95.1301 bits (235), Expect = 1.582e-17
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            ++WVNLIS+PDSWSN+VACIGETTASAAKRLGLRNVYFP QPGLDG
Sbjct:  247 QAWVNLISKPDSWSNSVACIGETTASAAKRLGLRNVYFPTQPGLDG 292

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: V4V7I3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001965mg PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.517e-83
Identity = 134/162 (82.72%), Postives = 150/162 (92.59%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   53 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: V4T4F5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001965mg PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 1.499e-82
Identity = 134/162 (82.72%), Postives = 150/162 (92.59%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   53 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A067GX46_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0221282mg PE=4 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.072e-82
Identity = 134/162 (82.72%), Postives = 150/162 (92.59%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVLSETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNDTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 211

HSP 2 Score: 85.1149 bits (209), Expect = 2.400e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = -1

Query:  940 RSWVNLISEPDSWSNAVACIGETTASAAKRLGLRNVYFPMQPGLDG 1077
            RSWVNLIS+ + WSN+VACIGETTASAAKRLGL+NVY+P  PGL+G
Sbjct:  240 RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 285

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Match: A0A067H996_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0221282mg PE=4 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 1.174e-81
Identity = 134/163 (82.21%), Postives = 150/163 (92.02%), Query Frame = -1

Query: 1831 NPKVVVTRERGKNTKLIDALAEHGINCLELPLIQHSQGPDSDRLVSVL-SETAFDWIVITSPEAGSVFLEAWKAAGTPNVRIGVVGAGTASIFENLNQSSKQSLHVAFAPSKATGKVLASELPMDGNERCTVLYPASAKASNEIEEGLSHRGFQVLRLNTYTT 2316
            NPKVVVTRERGKN KLI ALA+H I+CLELPLIQH+QGPD+DRL SVL ++T FDWI+ITSPEAGSVFLEAWK AGTPNVRIGVVGAGTASIFE + QSSK SL VAF+PSKATGK+LASELP +G ++CTVLYPASAKASNEIEEGLS+RGF+V+RLNTYTT
Sbjct:   50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
HEM4_ARATH	2.160e-66	69.57	Uroporphyrinogen-III synthase, chloroplastic OS=Ar...	[more]
HEM4_ORYSJ	7.760e-62	65.84	Uroporphyrinogen-III synthase, chloroplastic OS=Or...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097852 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PLT5_GOSAR	3.015e-113	98.97	Uroporphyrinogen-III synthase, chloroplastic-like ...	[more]
A0A0D2TNG6_GOSRA	2.679e-111	96.91	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QJX8_GOSRA	1.323e-109	96.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UR78_GOSRA	1.205e-108	96.39	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FB29_THECC	1.374e-99	85.13	Uroporphyrinogen-III synthase family protein isofo...	[more]
A0A061FC01_THECC	3.812e-98	85.13	Uroporphyrinogen-III synthase family protein isofo...	[more]
V4V7I3_9ROSI	1.517e-83	82.72	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4T4F5_9ROSI	1.499e-82	82.72	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067GX46_CITSI	4.072e-82	82.72	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
A0A067H996_CITSI	1.174e-81	82.21	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.10090		coord: 59..174 e-value: 1.3E-14 score: 53.2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 218..245
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..217
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 246..246
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..12 score: 0.495
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	PFAM	PF02602	HEM4	coord: 69..216 e-value: 1.1E-28 score: 100.1
IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	SUPERFAMILY	69618	HemD-like	coord: 56..219

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097852 ID=g.barbadense_cottongen_reftransV1_0097852; Name=g.barbadense_cottongen_reftransV1_0097852; organism=Gossypium barbadense; type=contig; length=3708bp
TTTTTAAGTTGAAGAGATTTTTATTATTATCATAAAAGAATGCACAAAAA
ATGCCATACAACTTAGAAGGCAGAGTAAATATGATTACAATTTCAATTGA
TAAACTCTCCTAACTGCTTATCAGATTTCATGGAGTGGAAATGCTCCCAA
TTCAATTTCAACACAACTGACATTGAGTCAAATGAATGGGCAACAGTGAG
AAAATGCATGTACAAGTTCTGATAACATGAATTGAATAGCCTCTCATCTG
ACCTCAAAATACAGTACTGCAGCCTCCAAATGGATATGTACCTTCAAAAT
GTTAAATTTCTACAAATTCCAACCCTTTAACTTGGAAAAACTTTCTTCAC
TTAATGGCCTGTGGTTCACAAAGAATTAGAAATGCTTGTGGTTCTACTTC
ACTCCGTGCTTAAGTTTCCAGAGGGACCTAATAGAACAACTCATTTATTC
TATTGAGTAAAAATGAGATTACTCCCAGGAATAATTAGAGAAAAGAGGCA
AAAATGGATACCTTGATATCTTTCAATCCTAAAATTTGTCATGAGCCCTT
AAGGCTTCAAGGATGCTAGCAACCCATCTGGAAATTCACATAAAACTGAG
GAGTCAGAATCTTTAATTTAGTCAAAACCCAAAAGAACTTCCACTTTGAT
AAGTACAAAGGTTTGAAGAGACAAAAAGCGAATGTAATTAAAGGAAGAAC
TTTTTTTGCTAAGTCAAGGAAGCTCAGCTCAAATAGAATTTTCCTAAACA
ATCGATAAGTATAGGTTCTCCTAGGAGAGACTTGGCTATTGAAGCAAAAA
CGATTGCAGGAAAAAAGATTGCAGGACCTTGGTCGCGGTGAAACTTTATG
GTTGCTTCAACAGTCGGACTAAATTCAAATGCAACTTACTGCTACCTAAG
GTAGCTCAAGCAGAAAGTTGGATTAAAGAAAGAGGATTACCCATCAAGTC
CAGGCTGCATCGGGAAATACACATTTCTCAATCCTAATCTTTTTGCAGCG
GAGGCAGTTGTCTCTCCAATACAGGCCACTGCATTGCTCCAAGAATCAGG
CTCTGAAATGAGATTGACCCAAGATCTGTAGCAATAGAAGTGGAGAAACT
AAGTTTACCAAAAGAGAAAGAAAAACTGTCCCAACGAAAGACTTGGGAAA
TCAGGCATCCCAAGCAGACCATGTTGAAAGGTGACAATTAAGGTCCAACT
ACCATGATAATTCAAATTACATGCAGCAACAAGTCTACAGGATGGACAAT
GTGCTTGCAGAATCACTAACAGATGGAAAACTTTTAAGACAGCCTACGGG
TGCAAAGAAAAGAATCAACTATATACCGAACCGCAGAAGGTGAAGCAACA
GCAACAACTGGCACAGATTGGGCCTTCTCCAAGACAATATGGTCAACATG
ATCAACAGGTACCTGAAAGGAATGACTAAACATCAAGGACTACTAGAGCA
TGCTGAGTTGGCAGTCATAAACCATCATCGACTACAAGTTACTATCTTGA
ATTAGGAACAAATCTTGCTCCCCAAGAACCAAGAAGGACAACAAACTTTG
CAGCAGACTCAAACAGCATTCTGCAGCAGATGCTTATTCTAAATATCTCA
TACATCTGCCAACTTGCCCAGACTTTACAAAAAGAATTTTTGGATTATGC
TCGTGTTGCTCTCAACAATACAATAGACTGTTCTGCTGGCATTGCTAAAG
TTTCTATTAAGCTAAACAAAAGTGCAATTCAACTTCAGATGAGGTAGATA
AGGTGAAAAAATGTAACCATTAATGGAATGACATCTAAAGAAGAAACTGG
AACTAAAAGTACCAATACAGAGATACTCACAGTTGTGTAAGTATTTAGCC
TCAGAACCTGAAATCCACGATGAGACAAGCCTTCTTCAATCTCATTGCTA
GCCTTCGCTGAAGCTGGATATAAGACAGTGCATCTCTCATTCCCATCCAT
TGGAAGCTCTGAAGCCAAAACTTTTCCTGTTGCTTTTGATGGTGCAAATG
CAACATGAAGTGATTGCTTTGATGATTGATTTAGATTCTCAAATATACTT
GCAGTACCAGCTCCAACAACACCAATCCTAACATTTGGTGTTCCTGCTGC
CTTCCATGCCTCAAGAAAGACTGAACCAGCTTCAGGTGAAGTTATGACAA
TCCAGTCAAACGCCGTTTCACTTAAAACAGAAACAAGCCTATCCGAGTCA
GGCCCTTGTGAATGCTGAATAAGGGGAAGTTCCAAGCAATTGATCCCATG
TTCGGCCAGAGCGTCAATAAGCTTGGTGTTTTTGCCTCGTTCCCTGGTGA
CGACGACTTTCGGATTCGAAGAAGCATGCTGAATCACTTGCGAAGTCGAC
GGAGACGAAGTCGAAGACGCTCCGATTCTGGCACGAGAGAAAGAGATTCG
CGTTTGAAGTTGCAAAGGAAAAGACGGACATGGCGGAGCGAGAGGACTGA
GAGAGGAGAGAGAAAGTAACGCCATTGAAACGTGTTGGGCAGACGATGGA
GGATTGGGCCAAAAGGGGCCAGCTGTTGCCGAATTAACTAACTACTAAAC
CATGATAATTAATTTTTTTTTTTTTCGCAAACCAAAAATATCTAATAGCC
CCTAATTGTTTTCCCGCCTTTAAATAATGCCTACGTTTCCGGTCGGTAAC
CTGTAGAACATACTGGATGACACGTGTAACTTTTTTGTGGCGGGCAAGAG
AGCCTAGTTCTAATTCCCGCCGACACAACAGCATCCCACATTTTTCACTT
TATTCTAAGCCGGGTCCATCATAATCGACTGGGGTTTTAGATAATGAGAC
GGTGCAGACTTCCCTGAGGATCCATCATTCTCCACGGATGATACTGAAAA
GACCGTTGATATTCCTGGCTCTTGTTTCAATCTCCATATCTGCCAGGCTT
CCTTAGGTTCGCCTCTCAACAGAACACAAGCCATCAAAAATGGCACATCG
AAGGAACTTGACTTTGTGCTCGAGCGAAAGACACAATCCTGAAAATAGAC
GAGCGAAGAGTCGGCGTCAAAAACAACAGCCTTTACAGAGGAAGGTAGAG
GATTATTTTGAGCCCAAAACTTATTATTCCACAAGCAATTCTCATCACGT
CGGAAAAACTGGTCAGTGACTGACTGATGCTATGACAAAATTGATTGCTT
AGCAGCCAATGGTCGACCGCCACAATAGCCGTGGAGAACTCCAAACCTCC
TTTTCAGAATCTATTGTTCGACATCTTTGATCGAAGAATTTGAACAGTCA
GTGCTCTTTGGCTGAATAAGAGGAACAAGTGGCTCAATTCTCGAGGTAAA
TAGCGATCGACATTGGGTCTACTTAGACACCTCCAAAACTTGAAACACAG
AACAGGGAGAATGGTGATATTTTAAAAGGAAGGGATTTGAACCATAGGAG
ATGACATAAGGAAAGGAGCACTAGCAGTGCCCTTCAAGCGATGCCGGTGG
TGGACGGCAACAATGGAATAAGATAACAGACGACGAATAGGGTTGTTTCA
GGGATAAGGCACAACGCCCAATGTTTGGCGAATGAGGCTCGACTGCAGGG
CCACTGGGCAGGGAAGCAATGTTGGAGAAAAGCAAATTAAATACTTCAAA
ACCGGCAAAGAAGGTTTTTTATTTACACTAATTATGTTATTTGATGGTTG
GGTTTTGACCAAAATAATTTATTTTTAAATTTTATCTTTATAATTAGTTA
ATTCTTGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003754	4pyrrol_synth_uPrphyn_synth

Vocabulary: **Molecular Function**
Term	Definition
GO:0004852	uroporphyrinogen-III synthase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0033014	tetrapyrrole biosynthetic process

Search form

g.barbadense_cottongen_reftransV1_0097852, g.barbadense_cottongen_reftransV1_0097852 (contig) Gossypium barbadense

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