g.barbadense_cottongen_reftransV1_0097844, g.barbadense_cottongen_reftransV1_0097844 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097844
Unique Nameg.barbadense_cottongen_reftransV1_0097844
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1881
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt13chromosomeg.barbadense_cottongen_reftransV1_0097844:1..1881 .
Dt13:8506635..8508515 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: A0A0D2VA57_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G067000 PE=4 SV=1)

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 408/413 (98.79%), Postives = 409/413 (99.03%), Query Frame = 2
Query:  221 VLQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            VLQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLV IYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKI GLVPENG TVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGIE+ETDRDEDIELVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVL MKAKEQSWPQTSWGVLNLGLVK
Sbjct:   20 VLQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVHIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIGGLVPENGLTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGIEVETDRDEDIELVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLLMKAKEQSWPQTSWGVLNLGLVK 432          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: A0A061E1V8_THECC (E3 ubiquitin-protein ligase RNF25 OS=Theobroma cacao GN=TCM_007657 PE=4 SV=1)

HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0
Identity = 356/412 (86.41%), Postives = 390/412 (94.66%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            L++LL SSRPFLRGEL+ VDKNLP+LVAVLRSVGAGECWHKHGSFL+HLVD+YRILKIWKAQD VCLCGLFHSAYSN+YVNLAIFDPSTGR+VVRGHVG+AAERLIHLFC+VPRQPLIHDDLLFKY+DSE+VEHL  SE+SLKNAKEKG+FNE+E WR K+RGL+PENG  VKHIKTGEDVLVSRR++AIFL+MT+ADFSDQL+GFQDVLFENFDGRLEF GNN V  WPGNGKPGLWLNS SRMGAIYSLI+REEEIFVE+RKR  G+ +ET+RDEDIELVVPPVFE+C+K+LGAKEQIEARDLYWEAVCDDSKGGQERAE LLLGSIEKN FVGEPHVVLAQVYLTKGRFEEAEKEAEKGL LML+WSSPWDKRMSW+GWIAW RVL MKAKE+SWPQTSWG+LNLGLVK
Sbjct:  155 LRSLLASSRPFLRGELESVDKNLPSLVAVLRSVGAGECWHKHGSFLDHLVDVYRILKIWKAQDPVCLCGLFHSAYSNAYVNLAIFDPSTGREVVRGHVGEAAERLIHLFCIVPRQPLIHDDLLFKYSDSELVEHLKLSEISLKNAKEKGLFNEEEVWRKKLRGLLPENGIVVKHIKTGEDVLVSRRIVAIFLLMTIADFSDQLFGFQDVLFENFDGRLEFSGNNYVGFWPGNGKPGLWLNSASRMGAIYSLIVREEEIFVERRKRTGGVGVETERDEDIELVVPPVFENCTKILGAKEQIEARDLYWEAVCDDSKGGQERAEALLLGSIEKNSFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLTLMLEWSSPWDKRMSWDGWIAWARVLLMKAKEKSWPQTSWGILNLGLVK 566          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: A0A067L8M7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24468 PE=4 SV=1)

HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 320/412 (77.67%), Postives = 367/412 (89.08%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LQ LL S+RPFLRGEL+ VD+NLP LV+VLRSVGAGECWHKHGSFL+HLVDIYRILKIWKA D VCLCGLFHSAYSNSYVNLAIFDP+TGRDVVR HVG+AAE+LIHLFC+VPRQPLIHDDLLFKY+DSE+VEHL  SE+SL+NAKEKG+FN +E WR KI  L+P  G TVKHIKTGEDVLV+RRV A+FLMMTMADFSDQL+GFQD LF+N DGRLEF GNN  ALWPG+GKPGLW+NSISRMGAIYSL+ REEEI+VE+RKR  G++I+ +RDE+IELVVPPVFE C+K+L A +QI ARDLYWE VCD S+ G ++ EELLL  +EKNPFVGEPHV+L Q+YL KGRFEEAE++AE+GL+LML+W S WDKR SWEGWIAW RVL MKAKE+SWPQTSWG+LNLGLV+
Sbjct:    9 LQTLLASTRPFLRGELESVDENLPALVSVLRSVGAGECWHKHGSFLDHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRAHVGEAAEKLIHLFCIVPRQPLIHDDLLFKYSDSELVEHLKLSELSLRNAKEKGLFNGEEPWRKKINSLLPAKGITVKHIKTGEDVLVTRRVAAVFLMMTMADFSDQLFGFQDSLFDNIDGRLEFTGNNFTALWPGDGKPGLWVNSISRMGAIYSLLQREEEIYVEERKRGGGVKIDKERDEEIELVVPPVFERCTKILDANDQIVARDLYWEGVCDMSRRGVDKVEELLLSCVEKNPFVGEPHVLLGQIYLGKGRFEEAERQAERGLMLMLEWGSTWDKRTSWEGWIAWARVLLMKAKEKSWPQTSWGILNLGLVR 420          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: B9HG84_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15300g PE=4 SV=1)

HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 326/412 (79.13%), Postives = 378/412 (91.75%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LQ LL S+RPFLRGEL+ +DKNLP+L++VLRSVGAGECWHKHGSFL+HLV+IYRILKIWKA DSVCLCGLFHSAYSNSYVNLAIFDP+TGRDVVR HVG+AAERLIHLFC+VPRQ LIHDDLLFKY+D E+VEHL ASE+SL+NA EKG+FN +E+WR K+  L+P +G TVKHIK+GEDVLV+RR++ +FL+MTMADFSDQL+GFQD+LFENFDGRLEF+GNN  ALWPG+GKPGLW+NSISRMGAIYSLI+REEEIF+E+RKR  G E++ +RDEDIELV+ PVFE+C++VL A+EQ+ ARDLYWEAVCD SKGG ERAEELL+ SIEKNPFVGEPHVVL Q YLTKGRFEEAEKEAE+G+ L+L+W SPWDKRMSWEGWIAW RVL MKAKE+SWPQTSWG+LNLGLV+
Sbjct:   19 LQTLLASARPFLRGELESIDKNLPSLISVLRSVGAGECWHKHGSFLDHLVEIYRILKIWKAPDSVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRNHVGEAAERLIHLFCIVPRQSLIHDDLLFKYSDIELVEHLKASELSLRNAGEKGLFNGEESWRKKLASLLPASGITVKHIKSGEDVLVTRRMVGVFLLMTMADFSDQLFGFQDLLFENFDGRLEFLGNNFGALWPGDGKPGLWINSISRMGAIYSLIVREEEIFIEERKRAGGFEVDRERDEDIELVLAPVFENCTQVLDAREQVVARDLYWEAVCDTSKGGLERAEELLVSSIEKNPFVGEPHVVLGQFYLTKGRFEEAEKEAERGVTLLLEWGSPWDKRMSWEGWIAWARVLLMKAKEKSWPQTSWGILNLGLVR 430          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: V4UC58_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015311mg PE=4 SV=1)

HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 318/418 (76.08%), Postives = 371/418 (88.76%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXX---XXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQ---ERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            L+ L+ S+RPFLRGEL+ +DKNLP+L+AVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKA D VCLCGLFHSAYSNSYVNLAIFDP+TG+DVVRGHVGDAAE+LIHLFC+VPRQPLIHDDLLFKY+D E+VEHL AS+VSL+NAKEKG+FN +EAWR KI  L+P +G TVKHIKTGEDV VSRRV+A F+M+T+ADFSDQL+GFQD LF N DG+LEF GN+  ALWPG+GKPGLW+NS+SRMGAIYSLI REEEIF+++RK  +G     +  +RDEDIEL VPPVFE+C+++L AKEQIE RDLYWEAVC +S G +   E+AEELLL  IEKNPFVGEPHVVL Q+YL KG+FEEAE++A KGL+L+L+W SPWDKRMSWEGW+AW RVL+MKAKE+SWPQTSWGVLNLGLV+
Sbjct:   13 LETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGQDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFKYSDQELVEHLKASDVSLRNAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAGAVGVGVNKERDEDIELPVPPVFENCTRILDAKEQIEGRDLYWEAVCGNSDGSKEKLEKAEELLLACIEKNPFVGEPHVVLGQIYLAKGKFEEAERQAGKGLMLLLEWGSPWDKRMSWEGWVAWTRVLYMKAKEKSWPQTSWGVLNLGLVR 430          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: B9RGI5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454180 PE=4 SV=1)

HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 322/412 (78.16%), Postives = 370/412 (89.81%), Query Frame = 2
Query:  224 LQALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDSKGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LQ LL S+RPFLRGEL+ VDKNLP L++VLRSVGAGECWHKHGSFL+HLVDIYRILKIW A DSVCLCGLFHSAYSNSYVNLAIFDP+TGRDVVRGHVG AAERLIHLFC+VPRQPLIHDDLLF Y+DSE+V+HL  SE+SLKNAKEKGVF+ +++WR KI  L+P  G TVK IKTGEDVLV+RR++A+F+MMTMADFSDQL+ FQD+LF+N DGRLEF GNN  +LWPG+GKPGLW+NSISRMGAIY+LI REEEIFVE+R R  GIE++ +RDEDIELVVPPVF+ C+++L A++QIEARDLYWEAVCD SK G ++ EELLL  IEKNP+VGEPHVVL+QVYLTK RFEEAE+EAEKG+ LML+W SPWDKR SWEGWIAWGRVL MKAKE+SWP TSWG+LNLGLV+
Sbjct:   13 LQTLLASTRPFLRGELESVDKNLPALISVLRSVGAGECWHKHGSFLDHLVDIYRILKIWNASDSVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGPAAERLIHLFCIVPRQPLIHDDLLFNYSDSELVQHLLLSEISLKNAKEKGVFDAEDSWRKKINSLLPAAGITVKRIKTGEDVLVTRRIVAVFVMMTMADFSDQLFSFQDLLFDNSDGRLEFSGNNLASLWPGDGKPGLWINSISRMGAIYTLIRREEEIFVEERIRAGGIEVDEERDEDIELVVPPVFDKCTRILDARQQIEARDLYWEAVCDLSKRGLDKVEELLLSCIEKNPYVGEPHVVLSQVYLTKDRFEEAEREAEKGVTLMLEWGSPWDKRTSWEGWIAWGRVLLMKAKEKSWPNTSWGILNLGLVR 424          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: R0HLQ7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013769mg PE=4 SV=1)

HSP 1 Score: 641.728 bits (1654), Expect = 0.000e+0
Identity = 315/413 (76.27%), Postives = 363/413 (87.89%), Query Frame = 2
Query:  233 LLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRVSGX--XXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            LL+S+RPFLRGEL+ +D  LP+L+AVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA +SVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HVG+AAE LIHLFCVVPRQ LIHDDLLFKY+D E+VEHL  SEVSL+NAKEKGVF+ DE WR K+ GLVPENG  VKHIKTGE+++VSRRV+A+FL+MTMADFSDQL+GFQD LF N DGRLEF GNN  ALWPGNGKPGLW+NS SRMGAIYSLI+REEEI +EQR+RVSG    +  +RDEDI+LV+PPVF  C+KVL AKEQIEAR++YWE V  D+  +G  ERAEE LLG IEKNPFVGEPHV+L+QVYL K RF+EAE EAEKGL+L+LQW SPWDKRMSWEGWIAW RVL MK+++QSWP  SWG+LNLGLV+
Sbjct:   14 LLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDDLLFKYSDRELVEHLRCSEVSLRNAKEKGVFDGDEEWRKKMNGLVPENGVAVKHIKTGEEIIVSRRVVAVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNSNSRMGAIYSLIVREEEILMEQRRRVSGSGLVLRKERDEDIDLVLPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEGEAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 426          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: D7LAU9_ARALL (Binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479517 PE=4 SV=1)

HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0
Identity = 316/414 (76.33%), Postives = 362/414 (87.44%), Query Frame = 2
Query:  230 ALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRV--SGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            A+L+S+RPFLRGEL+ +D  LP+L+AVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA +SVCLCGLFHSAYSNSYVNLAIFDPSTGR+VVR HVG+AAE LIHLFCVVPRQ LIHDDLLFKY+D E+VEHL  SEVSL+NAKEKGVF+ DE WR KI GLVPENG  VKHIKTGE+++VSRRV+ +FL MTMADFSDQL+GFQD LF N DGRLEF GNN  ALWPGNGKPGLWLNS SRMGAIYSLI+REEEI +E+R+R   SG E+  +RDEDIELVVPPVF  C+KVL AKEQIEAR++YWE V  D+  +G  ERAEE LLG IEKNPFVGEPHV+L+QVYL K RF EAE+EAEKGL+L+LQW SPWDKRMSWEGWIAW RVL MK+++QSWP  SWG+LNLGLV+
Sbjct:   12 AVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGREVVRDHVGEAAESLIHLFCVVPRQTLIHDDLLFKYSDCELVEHLDCSEVSLRNAKEKGVFDGDEEWRKKINGLVPENGAVVKHIKTGEEIVVSRRVVGVFLFMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWLNSNSRMGAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIELVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFNEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 425          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: Q9LHE6_ARATH (Genomic DNA, chromosome 3, P1 clone: MZE19 OS=Arabidopsis thaliana GN=At3g19990 PE=4 SV=1)

HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 312/414 (75.36%), Postives = 363/414 (87.68%), Query Frame = 2
Query:  230 ALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRV--SGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            A+L+S+RPFLRGEL+ +D  LP+L+AVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA +SVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HVG+AAE LIHLFCVVPRQ LIHD+LLFKY+D E+VEHL  SEVSL+NAKEKG+F+ DE WR KI  LVPENG  VKHIKTGE+++VSRRV+ +FL+MTMADFSDQL+GFQD LF N DGRLEF GNN  ALWPGNGKPGLW+NS SRMGAIYSLI+REEEI +E+R+R   SG E+  +RDEDI+LVVPPVF  C+KVL AKEQIEAR++YWE V  D+  +G  ERAEE LLG IEKNPFVGEPHV+L+QVYL K RF+EAE+EAEKGL+L+LQW SPWDKRMSWEGWIAW RVL MK+++QSWP  SWG+LNLGLV+
Sbjct:   37 AVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDELLFKYSDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVVKHIKTGEEIVVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNSNSRMGAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 450          
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Match: Q501F4_ARATH (At3g19990 OS=Arabidopsis thaliana GN=At3g19990 PE=2 SV=1)

HSP 1 Score: 635.565 bits (1638), Expect = 0.000e+0
Identity = 312/414 (75.36%), Postives = 363/414 (87.68%), Query Frame = 2
Query:  230 ALLDSSRPFLRGELQYVDKNLPNLVAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAQDSVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCVVPRQPLIHDDLLFKYTDSEIVEHLAASEVSLKNAKEKGVFNEDEAWRNKIRGLVPENGHTVKHIKTGEDVLVSRRVLAIFLMMTMADFSDQLYGFQDVLFENFDGRLEFVGNNNVALWPGNGKPGLWLNSISRMGAIYSLILREEEIFVEQRKRV--SGXXXXXXXXXXXXLVVPPVFEHCSKVLGAKEQIEARDLYWEAVCDDS--KGGQERAEELLLGSIEKNPFVGEPHVVLAQVYLTKGRFEEAEKEAEKGLILMLQWSSPWDKRMSWEGWIAWGRVLWMKAKEQSWPQTSWGVLNLGLVK 1459
            A+L+S+RPFLRGEL+ +D  LP+L+AVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA +SVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVR HVG+AAE LIHLFCVVPRQ LIHD+LLFKY+D E+VEHL  SEVSL+NAKEKG+F+ DE WR KI  LVPENG  VKHIKTGE+++VSRRV+ +FL+MTMADFSDQL+GFQD LF N DGRLEF GNN  ALWPGNGKPGLW+NS SRMGAIYSLI+REEEI +E+R+R   SG E+  +RDEDI+LVVPPVF  C+KVL AKEQIEAR++YWE V  D+  +G  ERAEE LLG IEKNPFVGEPHV+L+QVYL K RF+EAE+EAEKGL+L+LQW SPWDKRMSWEGWIAW RVL MK+++QSWP  SWG+LNLGLV+
Sbjct:   12 AVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDELLFKYSDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVVKHIKTGEEIVVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNSNSRMGAIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAREMYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKGLLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 425          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0097844 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2VA57_GOSRA0.000e+098.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E1V8_THECC0.000e+086.41E3 ubiquitin-protein ligase RNF25 OS=Theobroma cac... [more]
A0A067L8M7_JATCU0.000e+077.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HG84_POPTR0.000e+079.13Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V4UC58_9ROSI0.000e+076.08Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9RGI5_RICCO0.000e+078.16Putative uncharacterized protein OS=Ricinus commun... [more]
R0HLQ7_9BRAS0.000e+076.27Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
D7LAU9_ARALL0.000e+076.33Binding protein OS=Arabidopsis lyrata subsp. lyrat... [more]
Q9LHE6_ARATH0.000e+075.36Genomic DNA, chromosome 3, P1 clone: MZE19 OS=Arab... [more]
Q501F4_ARATH0.000e+075.36At3g19990 OS=Arabidopsis thaliana GN=At3g19990 PE=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 326..391
e-value: 1.0E-4
score: 21.4
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 322..385
NoneNo IPR availablePANTHERPTHR14699:SF3SUBFAMILY NOT NAMEDcoord: 15..425
NoneNo IPR availablePANTHERPTHR14699STI2 PROTEIN-RELATEDcoord: 15..425

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097844 ID=g.barbadense_cottongen_reftransV1_0097844; Name=g.barbadense_cottongen_reftransV1_0097844; organism=Gossypium barbadense; type=contig; length=1881bp
CCCCGAACGGATGTCATTTTAAGATGCTGCGGTATCTGTGGCAACTACTA
ATCCAAACAAAAACATAGAAAAAGTAGGATTAAACTCTTTCACGTCACTT
CCCCCATATCACTACAATTTCATCTCTAGACTCGGTTTCCCAAAGATTAG
AAACTCTATCACCATGCCATCAACTTCATCGGCAACCCCACCGACACCAT
CTCATCCCACCACTCACCACGTCCTTCAAGCCCTGTTAGACTCCTCACGT
CCCTTCCTTCGTGGCGAGCTTCAATATGTCGACAAAAACTTGCCTAATTT
GGTCGCCGTCTTGCGTTCCGTTGGTGCCGGCGAGTGTTGGCACAAGCACG
GCAGCTTTTTAGAGCATCTGGTCGATATCTATCGGATTCTCAAAATATGG
AAGGCGCAAGACTCCGTTTGCCTTTGCGGTCTTTTCCACTCTGCTTACTC
CAACTCTTACGTCAACCTCGCCATATTCGACCCTTCAACCGGCCGCGACG
TCGTTCGAGGCCACGTCGGCGACGCCGCAGAGCGTTTAATCCATTTGTTC
TGCGTCGTCCCAAGGCAACCTTTGATCCACGATGACCTTTTGTTCAAGTA
TACGGATTCGGAAATCGTCGAACACCTTGCGGCCTCCGAGGTTTCGTTGA
AGAACGCCAAAGAAAAGGGCGTTTTTAATGAAGACGAGGCTTGGAGGAAT
AAGATACGCGGACTGGTGCCTGAAAATGGGCATACAGTGAAGCACATAAA
GACCGGCGAGGACGTGTTGGTGTCTCGAAGGGTGTTGGCTATTTTCCTCA
TGATGACCATGGCAGATTTCAGTGACCAGCTTTATGGATTCCAGGATGTT
CTGTTTGAAAACTTCGATGGTAGGCTCGAATTCGTGGGCAACAACAACGT
TGCTTTATGGCCTGGGAATGGCAAACCAGGGCTGTGGTTGAATTCAATAT
CGAGAATGGGGGCAATATATAGTTTAATACTGAGAGAGGAAGAGATTTTT
GTTGAACAAAGGAAAAGGGTAAGTGGCATTGAGATTGAAACTGACAGAGA
TGAAGACATTGAGCTTGTTGTGCCACCAGTTTTTGAGCACTGCAGTAAGG
TGTTAGGTGCAAAAGAGCAAATAGAGGCAAGGGACTTGTATTGGGAAGCT
GTTTGTGATGATTCAAAAGGAGGGCAAGAGAGAGCTGAGGAATTGTTATT
AGGCAGCATTGAGAAGAACCCTTTTGTGGGTGAACCACATGTGGTGTTGG
CTCAGGTTTATTTGACCAAAGGAAGGTTTGAGGAAGCTGAAAAAGAGGCT
GAGAAAGGGTTGATTTTGATGCTTCAATGGAGCAGTCCATGGGATAAAAG
GATGTCTTGGGAAGGATGGATTGCTTGGGGAAGGGTTCTGTGGATGAAAG
CTAAAGAACAATCTTGGCCACAAACTTCATGGGGTGTCCTCAATTTGGGC
CTTGTTAAGTGATATCAGTTCCATTAGCTTGTTTCATCTTTGTTCCATGC
ATTTTCTGGTATATGATCCCCTGCCAATAATAATACTAATTATAACTCTG
CATGTATTGGAAGTTGTAATTAGTTGATGCGGTTTGGTCACAAAGTTCTG
GGGGTATCTTCAATTTAGGCCTTGTTATAAGTAATGTCACTTCCATTAGC
TTATTTCCTCTTTGTTCTATGCATTTTCTGCTATATATGTTCCAAGTTAT
GGCCTGTCAAAATCATACTGATAATCAAACCCTGCATGTATTGGAAGTAT
CTTATAAACAAACTTAATTTGTCAATATGCTTGTTGGGAACTTTTGGAAT
TTGTGTTTTGATCCCTTAATTAAATCCTCTCACCTCGTTCATCCTCTGTA
TTAAAGTTTCTTATATAATATACCTTTGGTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding