g.barbadense_cottongen_reftransV1_0097665, g.barbadense_cottongen_reftransV1_0097665 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2T6F3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G113200 PE=4 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 7.432e-101 Identity = 158/174 (90.80%), Postives = 167/174 (95.98%), Query Frame = -3 Query: 1843 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVTVSSIYLSL 2364 MAAKSIEEEKPFLSGMGGGSTN+PVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEG TSPKCTPQ TFLSLLEVPFPS+NQMCLDAKLSC NCI+LKVD EDAYSSCILDINIEKE PD+L S+DE VGNSK+EG++TVSSI+LSL Sbjct: 1 MAAKSIEEEKPFLSGMGGGSTNVPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGNTSPKCTPQFTFLSLLEVPFPSKNQMCLDAKLSCRNCIDLKVDGEDAYSSCILDINIEKELPDILTSSDEIVGNSKTEGVLTVSSIFLSL 174
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0B0PKM7_GOSAR (Adenine deaminase 2 OS=Gossypium arboreum GN=F383_02541 PE=4 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 4.729e-100 Identity = 156/166 (93.98%), Postives = 161/166 (96.99%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEG TSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVD EDAYSSCILDINIEKE PD+L S+DE VGNSK+EG++T Sbjct: 1 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGNTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDSEDAYSSCILDINIEKELPDILTSSDEIVGNSKTEGVLT 166 HSP 2 Score: 88.5817 bits (218), Expect = 6.661e-16 Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = -2 Query: 251 EKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRV 406 EKS ERV +AP NRW+RYKRAASFDSRKI LFSILS +GTLILIYLTLRV Sbjct: 181 EKSLTERVQEAPMNRWKRYKRAASFDSRKIFFLFSILSCLGTLILIYLTLRV 232
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2URI2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G113200 PE=4 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 8.356e-97 Identity = 151/166 (90.96%), Postives = 159/166 (95.78%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAKSIEEEKPFLSGMGGGSTN+PVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEG TSPKCTPQ TFLSLLEVPFPS+NQMCLDAKLSC NCI+LKVD EDAYSSCILDINIEKE PD+L S+DE VGNSK+EG++T Sbjct: 1 MAAKSIEEEKPFLSGMGGGSTNVPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGNTSPKCTPQFTFLSLLEVPFPSKNQMCLDAKLSCRNCIDLKVDGEDAYSSCILDINIEKELPDILTSSDEIVGNSKTEGVLT 166 HSP 2 Score: 66.6254 bits (161), Expect = 6.704e-9 Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = -2 Query: 296 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSIL 415 + EKS ERV +AP NRW+RYKRAASFDSRKIV LFSIL Sbjct: 178 LNVEKSLTERVQEAPMNRWKRYKRAASFDSRKIVFLFSIL 217
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2USG5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G113200 PE=4 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 1.111e-96 Identity = 151/166 (90.96%), Postives = 159/166 (95.78%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAKSIEEEKPFLSGMGGGSTN+PVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEG TSPKCTPQ TFLSLLEVPFPS+NQMCLDAKLSC NCI+LKVD EDAYSSCILDINIEKE PD+L S+DE VGNSK+EG++T Sbjct: 1 MAAKSIEEEKPFLSGMGGGSTNVPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGNTSPKCTPQFTFLSLLEVPFPSKNQMCLDAKLSCRNCIDLKVDGEDAYSSCILDINIEKELPDILTSSDEIVGNSKTEGVLT 166 HSP 2 Score: 91.2781 bits (225), Expect = 7.471e-17 Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = -2 Query: 251 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRV 415 + EKS ERV +AP NRW+RYKRAASFDSRKIV LFSILS +GTLILIYLTLRV Sbjct: 178 LNVEKSLTERVQEAPMNRWKRYKRAASFDSRKIVFLFSILSCLGTLILIYLTLRV 232
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2RKP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G113200 PE=4 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 2.765e-96 Identity = 151/166 (90.96%), Postives = 159/166 (95.78%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 MAAKSIEEEKPFLSGMGGGSTN+PVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEG TSPKCTPQ TFLSLLEVPFPS+NQMCLDAKLSC NCI+LKVD EDAYSSCILDINIEKE PD+L S+DE VGNSK+EG++T Sbjct: 1 MAAKSIEEEKPFLSGMGGGSTNVPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGNTSPKCTPQFTFLSLLEVPFPSKNQMCLDAKLSCRNCIDLKVDGEDAYSSCILDINIEKELPDILTSSDEIVGNSKTEGVLT 166
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2PE55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 6.102e-96 Identity = 152/175 (86.86%), Postives = 161/175 (92.00%), Query Frame = -3 Query: 1840 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVTVSSIYLSLH 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VTVSSIYLSLH Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVTVSSIYLSLH 175
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2SIX0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 295.434 bits (755), Expect = 4.436e-90 Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VT Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVT 166 HSP 2 Score: 82.0333 bits (201), Expect = 7.202e-14 Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = -2 Query: 296 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSIL 415 + EKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSIL Sbjct: 178 LNVEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSIL 217
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2SQD9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 6.369e-90 Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VT Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVT 166
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2SIX4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 7.386e-90 Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VT Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVT 166 HSP 2 Score: 122.094 bits (305), Expect = 3.184e-27 Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = -2 Query: 233 IGAEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 415 + EKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG Sbjct: 178 LNVEKSSNERVHDAPSNRWRRYKRAASFDSRKIVLLFSILSSVGTLILIYLTLRVRQTIDG 238
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Match: A0A0D2QYA5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G238400 PE=4 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 2.899e-89 Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = -3 Query: 1867 MAAKSIEEEKPFLSGMGGGSTNLPVNIACFELIKPSFDETNHHCSLDVLPILIEETSFPVREKCSLNTSHGQDVYSISVLPEEGKTSPKCTPQLTFLSLLEVPFPSENQMCLDAKLSCHNCINLKVDIEDAYSSCILDINIEKETPDLLKSNDETVGNSKSEGMVT 2364 M +SI+EEKPFLSGM GSTNLPVN++CFELIKPS DETN HCSLDVLPILIEETSF REKCSLNTSHGQDVYSISVLPEEG SPKCTPQLTFLSLLEVPF S+NQMCLDA+LSC NC++LKVD EDAYSSCILDINIEKETPDLLKSNDE VGNSKSEG+VT Sbjct: 1 MLVESIQEEKPFLSGMVDGSTNLPVNLSCFELIKPSLDETNQHCSLDVLPILIEETSFSAREKCSLNTSHGQDVYSISVLPEEGNMSPKCTPQLTFLSLLEVPFSSKNQMCLDAQLSCQNCVDLKVDSEDAYSSCILDINIEKETPDLLKSNDEIVGNSKSEGVVT 166 HSP 2 Score: 93.2041 bits (230), Expect = 1.532e-17 Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -3 Query: 280 RNHRTRGFMMHQATDGEDTKELHHLIRGKLSSFSQSCQVWGH 405 RNHRTRGFMMHQATDGEDT ELHHLIRGKLSSFSQSCQVWGH Sbjct: 180 RNHRTRGFMMHQATDGEDTNELHHLIRGKLSSFSQSCQVWGH 221 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097665 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097665 ID=g.barbadense_cottongen_reftransV1_0097665; Name=g.barbadense_cottongen_reftransV1_0097665; organism=Gossypium barbadense; type=contig; length=2543bpback to top |