g.barbadense_cottongen_reftransV1_0097658, g.barbadense_cottongen_reftransV1_0097658 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097658
Unique Name	g.barbadense_cottongen_reftransV1_0097658
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1953

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At02	chromosome	g.barbadense_cottongen_reftransV1_0097658:1..1953 . At02:14956428..14961352 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A0D2RBE3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G087700 PE=4 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 1.705e-116
Identity = 247/250 (98.80%), Postives = 248/250 (99.20%), Query Frame = -3

Query: 1094 AKYSSSSLRINXXXXXXXXXXXXXXXXXXXXXLKPSFLVRVXXXXXXXXXXXXXXXXXXXXXXXDNKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1843
            AKYSSSSLRINHSLLPFPSLKPKPLHSPSTPTLKPSFLVRVDDGDADAGGPD YDMDEEEVEELDNKKDFDVEYDPLAAASAATASSATIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV+
Sbjct:   18 AKYSSSSLRINHSLLPFPSLKPKPLHSPSTPTLKPSFLVRVDDGDADAGGPDGYDMDEEEVEELDNKKDFDVEYDPLAAASAATASSATIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVT 267

HSP 2 Score: 117.472 bits (293), Expect = 1.929e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = -3

Query:  539 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHSVAIRASYQFLPYSLFLHYLIYFSVLPE 709
            VTVPGGRNRDRKNDLLVIRDNGNSFKIIHSV IRASYQFLPYSLFLHYLIYFSVLPE
Sbjct:  266 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHSVTIRASYQFLPYSLFLHYLIYFSVLPE 322

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A0D2PQ04_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G087700 PE=4 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 2.142e-116
Identity = 247/250 (98.80%), Postives = 248/250 (99.20%), Query Frame = -3

Query: 1094 AKYSSSSLRINXXXXXXXXXXXXXXXXXXXXXLKPSFLVRVXXXXXXXXXXXXXXXXXXXXXXXDNKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1843
            AKYSSSSLRINHSLLPFPSLKPKPLHSPSTPTLKPSFLVRVDDGDADAGGPD YDMDEEEVEELDNKKDFDVEYDPLAAASAATASSATIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV+
Sbjct:   18 AKYSSSSLRINHSLLPFPSLKPKPLHSPSTPTLKPSFLVRVDDGDADAGGPDGYDMDEEEVEELDNKKDFDVEYDPLAAASAATASSATIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVT 267

HSP 2 Score: 81.6481 bits (200), Expect = 2.951e-26
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             SERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF
Sbjct:  295 SSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 333

HSP 3 Score: 66.2402 bits (160), Expect = 2.951e-26
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS
Sbjct:  266 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 295

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A0B0PFV4_GOSAR (Ras association domain-containing 5 OS=Gossypium arboreum GN=F383_02140 PE=4 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 5.243e-115
Identity = 244/250 (97.60%), Postives = 246/250 (98.40%), Query Frame = -3

Query: 1094 AKYSSSSLRINXXXXXXXXXXXXXXXXXXXXXLKPSFLVRVXXXXXXXXXXXXXXXXXXXXXXXDNKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1843
            AKYSSSSLRINHSLLPFPS+KPKPLH PST TLKPSFLVRVDDGDADAGGPDDYDMDEEEVEELDNKKDFDVEYDPLAAASAATASSATIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPD DVYSIPKVLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV+
Sbjct:   18 AKYSSSSLRINHSLLPFPSIKPKPLHFPSTSTLKPSFLVRVDDGDADAGGPDDYDMDEEEVEELDNKKDFDVEYDPLAAASAATASSATIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDMDVYSIPKVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVT 267

HSP 2 Score: 81.2629 bits (199), Expect = 1.390e-25
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             SERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF
Sbjct:  295 SSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 333

HSP 3 Score: 64.3142 bits (155), Expect = 1.390e-25
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGRNRDRKNDLLVIRDNG+SFKIIHS
Sbjct:  266 VTVPGGRNRDRKNDLLVIRDNGDSFKIIHS 295

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A061FHP2_THECC (Plastid transcriptionally active 6 isoform 1 OS=Theobroma cacao GN=TCM_035211 PE=4 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 3.273e-106
Identity = 197/217 (90.78%), Postives = 205/217 (94.47%), Query Frame = -3

Query: 1094 KPSFLVRVXXXXXXXXXXXXXXXXXXXXXXXDNKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1744
            KPSFLVRVDDGDAD GGPDDYDM+EE  E   NKKDFDVEYDPLA AS A+ASS T+DVDI ITESKSFVSTQGWDS+MVVDYRINEEEFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTDVYSIPKVLA MPQKYIRCA SDYGCYNVTEPPIDAPRDPLYK+EREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV+
Sbjct:   49 KPSFLVRVDDGDADGGGPDDYDMEEEVEELD-NKKDFDVEYDPLATASVASASSTTVDVDITITESKSFVSTQGWDSEMVVDYRINEEEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQKYIRCAKSDYGCYNVTEPPIDAPRDPLYKSEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVT 264

HSP 2 Score: 73.559 bits (179), Expect = 4.258e-23
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             SE+DDPTTVIEREEW KTR+DME HLRKLRDFSISNWF
Sbjct:  292 ASEKDDPTTVIEREEWVKTREDMEGHLRKLRDFSISNWF 330

HSP 3 Score: 63.929 bits (154), Expect = 4.258e-23
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VTVPGGRNRDRK+DLLVIRDNGNSFKIIH+
Sbjct:  263 VTVPGGRNRDRKSDLLVIRDNGNSFKIIHA 292

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: W9QCP8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003821 PE=4 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.553e-96
Identity = 151/185 (81.62%), Postives = 170/185 (91.89%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKDFD+EY+PLA A++ +      + DI + +SKSFVSTQGWDS+MVVDYRINE+EFHKISL  CDFFIRKPPDPDNDVYDFREMYV+PPDTDVY+IPKVLA MPQKYIRCA SDYGCYNVTEPPIDAPRDP+YK+ERE++KV+LTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKV+V+
Sbjct:   84 NKKDFDIEYEPLAGAASTSLVVGA-NEDIAMVQSKSFVSTQGWDSEMVVDYRINEDEFHKISLFHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAKSDYGCYNVTEPPIDAPRDPMYKSEREILKVYLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVVVA 267

HSP 2 Score: 65.855 bits (159), Expect = 7.201e-17
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = -1

Query:  442 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFS 543
             SER+DPTTVIEREEW KTRQDMERHLRKLRDFS
Sbjct:  295 SSEREDPTTVIEREEWAKTRQDMERHLRKLRDFS 328

HSP 3 Score: 50.447 bits (119), Expect = 7.201e-17
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            V VP G+NRDRK+DLLVI DNGNSFKI  S
Sbjct:  266 VAVPEGKNRDRKDDLLVIHDNGNSFKITPS 295

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A067GLG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025631mg PE=4 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.968e-96
Identity = 150/184 (81.52%), Postives = 164/184 (89.13%), Query Frame = -3

Query: 1097 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV 1648
            NKKD+DVEYDPL A           D DI + +SKSFV TQGWDS+ VVDYRI+E+EFHKISLM+CDFFIRKPPDPDNDVYDFREMYV+PPDTD+Y+IPKVLA MPQKYIRCA+SDYGCYNVTEPPIDAPRDP+YK+ERE+ KVFL KHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV
Sbjct:   11 NKKDYDVEYDPLVAGG---------DEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV 185

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A067GL80_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025631mg PE=4 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.494e-96
Identity = 150/185 (81.08%), Postives = 165/185 (89.19%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPL A           D DI + +SKSFV TQGWDS+ VVDYRI+E+EFHKISLM+CDFFIRKPPDPDNDVYDFREMYV+PPDTD+Y+IPKVLA MPQKYIRCA+SDYGCYNVTEPPIDAPRDP+YK+ERE+ KVFL KHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV+
Sbjct:   11 NKKDYDVEYDPLVAGG---------DEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVT 186

HSP 2 Score: 64.3142 bits (155), Expect = 2.460e-16
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             S ++D TTVIE+EEW KTR DMERHLRKLRDF++SNWF
Sbjct:  212 ASRKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF 250

HSP 3 Score: 50.0618 bits (118), Expect = 2.460e-16
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VT+P  RNRDRK+DLL++RDNGNSFKIIH+
Sbjct:  185 VTLP--RNRDRKSDLLIVRDNGNSFKIIHA 212

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: V4SII4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001886mg PE=4 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 7.964e-96
Identity = 150/185 (81.08%), Postives = 165/185 (89.19%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPL A           D DI + +SKSFV TQGWDS+ VVDYRI+E+EFHKISLM+CDFFIRKPPDPDNDVYDFREMYV+PPDTD+Y+IPKVLA MPQKYIRCA+SDYGCYNVTEPPIDAPRDP+YK+ERE+ KVFL KHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLV+
Sbjct:   78 NKKDYDVEYDPLVAGG---------DEDITMVDSKSFVYTQGWDSETVVDYRIDEDEFHKISLMECDFFIRKPPDPDNDVYDFREMYVTPPDTDIYAIPKVLAPMPQKYIRCAVSDYGCYNVTEPPIDAPRDPMYKSEREIHKVFLVKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVT 253

HSP 2 Score: 66.2402 bits (160), Expect = 5.343e-17
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             S+++D TTVIE+EEW KTR DMERHLRKLRDF++SNWF
Sbjct:  279 ASQKEDATTVIEKEEWVKTRADMERHLRKLRDFNVSNWF 317

HSP 3 Score: 50.447 bits (119), Expect = 5.343e-17
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VT+P  RNRDRK+DLL++RDNGNSFKIIH+
Sbjct:  252 VTLP--RNRDRKSDLLIVRDNGNSFKIIHA 279

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: A0A087HQ60_ARAAL (Plastid transcriptionally active 6 OS=Arabis alpina GN=AALP_AA1G235500 PE=4 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.234e-95
Identity = 154/185 (83.24%), Postives = 167/185 (90.27%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKD+DVEYDPLAAA A        D+     +SKSF+STQGWDS+MVVDYRINEEEFHKISL+DCDFFIRKPPDPDNDVYDFREMYV+PPDTD+YSIP+VLA MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYK+ERE+ KVFLTKHYRNRRL DPEFVLD EEIYVIDSKTKSITRA+VLV+
Sbjct:   82 NKKDYDVEYDPLAAAIAVAGGGGDGDI--AFVQSKSFISTQGWDSEMVVDYRINEEEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREITKVFLTKHYRNRRLNDPEFVLDLEEIYVIDSKTKSITRARVLVT 264

HSP 2 Score: 68.5514 bits (166), Expect = 8.665e-21
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = -1

Query:  427 SERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 540
             ER DP TVI REEW KTR+DME+HLRKLRDFS+SNWF
Sbjct:  293 GERADPATVIAREEWTKTREDMEKHLRKLRDFSVSNWF 330

HSP 3 Score: 60.8474 bits (146), Expect = 8.665e-21
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = -3

Query:  605 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHSVAIRA 709
            VTVPGGR RDRK+DLLVIRDNGNSFKIIH V  RA
Sbjct:  263 VTVPGGRKRDRKDDLLVIRDNGNSFKIIH-VGERA 296

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Match: I1JUY9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.373e-95
Identity = 153/185 (82.70%), Postives = 170/185 (91.89%), Query Frame = -3

Query: 1094 NKKDFDVEYDPLXXXXXXXXXXXTIDVDIQITESKSFVSTQGWDSDMVVDYRINEEEFHKISLMDCDFFIRKPPDPDNDVYDFREMYVSPPDTDVYSIPKVLALMPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREVMKVFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLVS 1648
            NKKDFD+EYDPL  A+AA A+++  D +I   ESKSFVSTQGWDSD V+DY+INE+EFHKI L+DCDFFIRKPPDPDNDVYDFREMYV+PPDTDVYSIPKVLA MPQKYIRCA SDYG YNVTEPPIDAPRDPLYKTERE++KV+LTKHY+NRR GDPEFVLDFEEIYV+DSKTKSITRAKVLV+
Sbjct:   78 NKKDFDIEYDPLVPAAAAAAAASAADDNIAFVESKSFVSTQGWDSDTVLDYKINEDEFHKICLVDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQKYIRCAQSDYGSYNVTEPPIDAPRDPLYKTEREILKVYLTKHYKNRRKGDPEFVLDFEEIYVVDSKTKSITRAKVLVT 262

HSP 2 Score: 68.1662 bits (165), Expect = 6.011e-18
Identity = 29/39 (74.36%), Postives = 37/39 (94.87%), Query Frame = -1

Query:  427 QSERDDPTTVIEREEWDKTRQDMERHLRKLRDFSISNWF 543
             SE++DPTTVIE++EW+ +R++MERHLRKLRDFSISNWF
Sbjct:  290 ASEKEDPTTVIEKQEWENSREEMERHLRKLRDFSISNWF 328

HSP 3 Score: 51.9878 bits (123), Expect = 6.011e-18
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = -3

Query:  620 VTVPGGRNRDRKNDLLVIRDNGNSFKIIHS 709
            VT PGGR RDR++DLLVI D G+SFKIIH+
Sbjct:  261 VTAPGGRTRDRRSDLLVISDRGSSFKIIHA 290

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0097658 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2RBE3_GOSRA	1.705e-116	98.80	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PQ04_GOSRA	2.142e-116	98.80	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PFV4_GOSAR	5.243e-115	97.60	Ras association domain-containing 5 OS=Gossypium a...	[more]
A0A061FHP2_THECC	3.273e-106	90.78	Plastid transcriptionally active 6 isoform 1 OS=Th...	[more]
W9QCP8_9ROSA	1.553e-96	81.62	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
A0A067GLG4_CITSI	2.968e-96	81.52	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067GL80_CITSI	3.494e-96	81.08	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4SII4_9ROSI	7.964e-96	81.08	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A087HQ60_ARAAL	1.234e-95	83.24	Plastid transcriptionally active 6 OS=Arabis alpin...	[more]
I1JUY9_SOYBN	1.373e-95	82.70	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35994	FAMILY NOT NAMED	coord: 52..267
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..12
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..295

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097658 ID=g.barbadense_cottongen_reftransV1_0097658; Name=g.barbadense_cottongen_reftransV1_0097658; organism=Gossypium barbadense; type=contig; length=1953bp
CGGAAATTTTATATTCTACTTTTTCAATATATGTTATTGATATGAGCAAC
TTGCAAGCAGACACATATCATATACGGTTGGACCAAAAGAGGCCAGCCCT
TTCTAACAGAGAACATGTTATTAAATGGGCCTAGTGTAAGAATTTTCAAA
GTAAAAGAGACCAATTGCTCCAAGTAAACGCCGATTATACAAGAGAAGAA
AAAGATTAAATTACAAGTTCTAACAACATACAACAAAATTGAACACGCCA
AGTGCCTGGCTAATTCCAACAACAACCATTTTCAGCATCAGCTAGGAACC
ATTGGTGAAGAAAGTGAATTTCCTAATCCTAAGTCTCAAGTTTTGATTTT
ACAAGTTCATCCTTCATTTTCTCACCGTGCTGATAAATCCAGGCAATCTT
CATGAAACAACCTCGACGTTCGATTAGAACCAATTCGAAATGCTGAAATC
TCGTAGCTTCCTGAGATGTCTTTCCATGTCTTGTCTGGTTTTGTCCCATT
CTTCCCTTTCGATTACAGTTGTAGGATCATCTCTTTCACTCTGGAAGCAC
AGAAAAGTAAATTAGGTAATGCAAAAACAGGGAGTATGGCAGAAATTGAT
ACGAAGCACGGATAGCCACCGAATGAATTATTTTGAAGGAGTTTCCGTTA
TCACGTATAACAAGTAGGTCATTCTTTCTATCCCGGTTTCTTCCTCCTGG
AACAGTGACCTACAGAAAGAATCAATTAACATGGTAAATCATTGAATGAG
TAACAAACATCTGATATGGATCAGAAAGTCAACTTTCAAGCATCGATAAA
AGATAGGATAAGAGGATTCCTTGGTGACTGACTACCCCAACTTCAATTTA
TCCTCAGAAAGAACCACAGTTAATAGGAGAAATATAGAAACATTATGAAA
TTTAGTTTCTTTTTCATTTTTCCGCTCGAACCGGCATCAATTGTTTGATA
TGTTCTGATGTTCATTGTTGAAGTTGTGCTTGAAATAAGTTCCGGAGCAA
GCTCAATTATATCGAAAAGAGAATGAAATGCAAGTCATCTTGTAGCCACA
TATGCGGTAGAAGTGTATCCAATGTAGATTTAAATACAGAGTTACTTACC
AAAACCTTTGCTCTGGTAATTGACTTGGTCTTTGAATCAATCACATATAT
CTCCTCAAAGTCTAGCACAAATTCGGGGTCACCTAATCTCCTGTTCCTAT
AATGTTTTGTTAAGAAAACCTTCATGACCTCTCGCTCCGTTTTATAAAGT
GGATCTCGAGGTGCATCAATGGGTGGCTCTGTAACATTGTAGCAGCCATA
ATCACTCATTGCACAGCGGATGTACTTTTGAGGCATTAGAGCCAAAACTT
TTGGAATAGAATACACGTCCGTATCCGGTGGAGAGACATACATCTCCCTG
AAATCATAAACATCATTATCCGGGTCAGGTGGTTTCCGAATAAAAAAATC
GCAATCCATCAAGCTAATCTTATGAAACTCCTCCTCATTTATCCTATAGT
CTACCACCATATCCGAGTCCCACCCTTGAGTCGACACAAAGCTCTTGCTT
TCAGTAATTTGAATGTCGACGTCAATAGTAGCAGAAGAAGCGGTGGCAGC
AGAGGCAGCAGCTAAAGGGTCGTATTCAACATCGAAGTCTTTCTTGTTGT
CCAGCTCTTCGACTTCTTCTTCGTCCATGTCGTAGTCATCGGGTCCTCCG
GCATCGGCGTCGCCGTCGTCGACTCGGACGAGGAACGAGGGTTTAAGGGT
TGGAGTTGAGGGGGAGTGGAGGGGTTTTGGTTTGAGAGAAGGGAAGGGAA
GGAGGGAGTGGTTGATGCGGAGGGAGGAGGAGGAGTATTTTGCAGTGAAA
AGTGGTGGGGAGAGGAAGAGGGTGGCGGTGGTAGTGGTGGCCATGGTGGC
GGGAGAACGGGGGAGAACAGAGTTCCGAGTTTGGATTAGATTTTTGGAAC
AAC

Search form

g.barbadense_cottongen_reftransV1_0097658, g.barbadense_cottongen_reftransV1_0097658 (contig) Gossypium barbadense

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