g.barbadense_cottongen_reftransV1_0097480, g.barbadense_cottongen_reftransV1_0097480 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097480
Unique Name	g.barbadense_cottongen_reftransV1_0097480
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	4502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt03	chromosome	g.barbadense_cottongen_reftransV1_0097480:1..4502 . Dt03:38889064..38896614 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy Swiss-Prot
Match: FBL91_ARATH (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.493e-32
Identity = 55/112 (49.11%), Postives = 67/112 (59.82%), Query Frame = -1

Query: 4092 SVPLLKPSMANKNRSSPSSATPKLM-EASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPG 4424
             V L K  M  K +S  S      M +    + MNEDLL NIL RLPA SFA A+ V++ W++ C  ILSRPK  SA S  P  L A +EV DKV+SEPIRP F IA++  G
Sbjct:    3 EVSLTKKEMTTKGKSENSKKMKTDMADMVPIAAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG 114

HSP 2 Score: 65.855 bits (159), Expect = 4.493e-32
Identity = 44/140 (31.43%), Postives = 68/140 (48.57%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            + E+V SR PIIVS V GILG+        EAC+                           +G ++      D   D    N  I+LT+G++PG+KVD+IP+++ +      M DKFV DI++Y S +SG  +  A +++
Sbjct:  123 ITERVGSRVPIIVSVVTGILGK--------EACND-------------------------KAGEVRLHSTSDDELFD--VANFAILLTIGYLPGMKVDIIPVIQAKGESGAEMEDKFVMDIRNYMSMVSGHAAAPACLIL 227

HSP 3 Score: 107.842 bits (268), Expect = 1.048e-22
Identity = 64/147 (43.54%), Postives = 81/147 (55.10%), Query Frame = -2

Query:  299 NRGDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMSYT 739
            N  D + L VDG GI+TGD FQ Y  D K A ++  +VS+ LR                + +  +K E  GGF F    RG+SFFG  N DSSPFL+NFP +P  G FC GEIGR          +  S +  LHVYS+VYL++SYT
Sbjct:  397 NGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLR---------------NLKSKPNKPEVVGGFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGRSLILEEGEEKKEVSIQRFLHVYSSVYLIVSYT 528

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2P060_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.263e-108
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPSSATPKLME SGFSLMNEDLLRNILSRLPA SFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSSATPKLMEVSGFSLMNEDLLRNILSRLPAISFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 2 Score: 189.889 bits (481), Expect = 4.263e-108
Identity = 102/140 (72.86%), Postives = 102/140 (72.86%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEKVRSRTPIIVSSVKGILGRDALSHEFRE                                     VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  113 MVEKVRSRTPIIVSSVKGILGRDALSHEFRE-------------------------------------VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 215

HSP 3 Score: 29.6462 bits (65), Expect = 4.263e-108
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -1

Query: 3426 DGSVDQKPILEKL 3464
            DGSVDQKPILEKL
Sbjct:  217 DGSVDQKPILEKL 229

HSP 4 Score: 130.568 bits (327), Expect = 8.420e-29
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = -2

Query: 1982 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE 2173
            K  GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE
Sbjct:  279 KARGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE 342

HSP 5 Score: 107.842 bits (268), Expect = 2.307e-21
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = -1

Query: 2685 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARGNYSYVMHL 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKARG  +   H 
Sbjct:  232 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKARGIGNIEFHF 290

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2MMT3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.332e-108
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPSSATPKLME SGFSLMNEDLLRNILSRLPA SFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSSATPKLMEVSGFSLMNEDLLRNILSRLPAISFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 2 Score: 189.889 bits (481), Expect = 4.332e-108
Identity = 102/140 (72.86%), Postives = 102/140 (72.86%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEKVRSRTPIIVSSVKGILGRDALSHEFRE                                     VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  113 MVEKVRSRTPIIVSSVKGILGRDALSHEFRE-------------------------------------VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 215

HSP 3 Score: 29.6462 bits (65), Expect = 4.332e-108
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = -1

Query: 3426 GFLIL*DGSVDQKPILEKL 3482
              +++ DGSVDQKPILEKL
Sbjct:  211 AIIMIGDGSVDQKPILEKL 229

HSP 4 Score: 171.4 bits (433), Expect = 2.271e-42
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = -2

Query: 1928 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEVCQCASVYIRKHELYRNI 2173
            K  GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEVCQCASVYIRKHELYRNI
Sbjct:  279 KARGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEVCQCASVYIRKHELYRNI 360

HSP 5 Score: 107.457 bits (267), Expect = 3.389e-21
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = -1

Query: 2685 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARGNYSYVMHL 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKARG  +   H 
Sbjct:  232 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKARGIGNIEFHF 290

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2QS39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.437e-108
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPSSATPKLME SGFSLMNEDLLRNILSRLPA SFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSSATPKLMEVSGFSLMNEDLLRNILSRLPAISFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 2 Score: 189.504 bits (480), Expect = 4.437e-108
Identity = 102/140 (72.86%), Postives = 102/140 (72.86%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEKVRSRTPIIVSSVKGILGRDALSHEFRE                                     VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  113 MVEKVRSRTPIIVSSVKGILGRDALSHEFRE-------------------------------------VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 215

HSP 3 Score: 29.6462 bits (65), Expect = 4.437e-108
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = -1

Query: 3426 GFLIL*DGSVDQKPILEKL 3482
              +++ DGSVDQKPILEKL
Sbjct:  211 AIIMIGDGSVDQKPILEKL 229

HSP 4 Score: 134.035 bits (336), Expect = 1.145e-29
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1955 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV---CQCASVYI 2173
            K  GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE+     C  +YI
Sbjct:  279 KARGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEMENNMDCVDLYI 354

HSP 5 Score: 107.842 bits (268), Expect = 3.433e-21
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = -1

Query: 2685 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARGNYSYVMHL 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKARG  +   H 
Sbjct:  232 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKARGIGNIEFHF 290

HSP 6 Score: 91.2781 bits (225), Expect = 5.794e-16
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = -2

Query: 1595 QMENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG 1717
            +MENNMDCVDLYIGVTRRRNCSVGSDKP+MMTTLALHG+EG
Sbjct:  342 EMENNMDCVDLYIGVTRRRNCSVGSDKPKMMTTLALHGVEG 382

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2RL09_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.083e-108
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPSSATPKLME SGFSLMNEDLLRNILSRLPA SFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSSATPKLMEVSGFSLMNEDLLRNILSRLPAISFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 2 Score: 190.274 bits (482), Expect = 5.083e-108
Identity = 102/140 (72.86%), Postives = 102/140 (72.86%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEKVRSRTPIIVSSVKGILGRDALSHEFRE                                     VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  113 MVEKVRSRTPIIVSSVKGILGRDALSHEFRE-------------------------------------VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 215

HSP 3 Score: 29.6462 bits (65), Expect = 5.083e-108
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -1

Query: 3426 DGSVDQKPILEKL 3464
            DGSVDQKPILEKL
Sbjct:  217 DGSVDQKPILEKL 229

HSP 4 Score: 148.673 bits (374), Expect = 3.114e-35
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = -1

Query: 2655 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARGNYSYVMHLFIFLKFYEAY 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKARGNYSY+MHLFIFLKFYEAY
Sbjct:  232 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKARGNYSYIMHLFIFLKFYEAY 300

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2MMT0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.799e-108
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPSSATPKLME SGFSLMNEDLLRNILSRLPA SFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSSATPKLMEVSGFSLMNEDLLRNILSRLPAISFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 2 Score: 189.889 bits (481), Expect = 6.799e-108
Identity = 102/140 (72.86%), Postives = 102/140 (72.86%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEKVRSRTPIIVSSVKGILGRDALSHEFRE                                     VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  113 MVEKVRSRTPIIVSSVKGILGRDALSHEFRE-------------------------------------VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 215

HSP 3 Score: 29.6462 bits (65), Expect = 6.799e-108
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = -1

Query: 3426 GFLIL*DGSVDQKPILEKL 3482
              +++ DGSVDQKPILEKL
Sbjct:  211 AIIMIGDGSVDQKPILEKL 229

HSP 4 Score: 104.76 bits (260), Expect = 1.252e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = -1

Query: 2712 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKAR 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKAR
Sbjct:  232 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKAR 281

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2QJF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 8.093e-108
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPSSATPKLME SGFSLMNEDLLRNILSRLPA SFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSSATPKLMEVSGFSLMNEDLLRNILSRLPAISFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 2 Score: 189.504 bits (480), Expect = 8.093e-108
Identity = 102/140 (72.86%), Postives = 102/140 (72.86%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEKVRSRTPIIVSSVKGILGRDALSHEFRE                                     VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  113 MVEKVRSRTPIIVSSVKGILGRDALSHEFRE-------------------------------------VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 215

HSP 3 Score: 29.6462 bits (65), Expect = 8.093e-108
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -1

Query: 3426 DGSVDQKPILEKL 3464
            DGSVDQKPILEKL
Sbjct:  217 DGSVDQKPILEKL 229

HSP 4 Score: 272.707 bits (696), Expect = 1.831e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = -2

Query:  287 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMSYTPPEH 733
            GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTLRKLKLDWDSKSSLSKSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVM YTPPEH
Sbjct:  383 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTLRKLKLDWDSKSSLSKSTIINAVDKKEAFGGFIFSCLGRGESFFGQLNVDSSPFLDNFPRVPVAGTFCGGEIGRGCTSLTANGDEGGSARCHLHVYSTVYLVMLYTPPEH 531

HSP 5 Score: 134.035 bits (336), Expect = 4.074e-29
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1955 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV---CQCASVYI 2173
            K  GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE+     C  +YI
Sbjct:  279 KARGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEMENNMDCVDLYI 354

HSP 6 Score: 107.071 bits (266), Expect = 1.548e-20
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = -1

Query: 2709 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARG 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKARG
Sbjct:  232 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKARG 282

HSP 7 Score: 90.5077 bits (223), Expect = 3.057e-15
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = -2

Query: 1577 QMENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG*DMKHF 1717
            +MENNMDCVDLYIGVTRRRNCSVGSDKP+MMTTLALHG+EG D ++ 
Sbjct:  342 EMENNMDCVDLYIGVTRRRNCSVGSDKPKMMTTLALHGVEGGDSEYL 388

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A0D2P056_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G120100 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 8.982e-108
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            MANKNRSSPSSATPKLME SGFSLMNEDLLRNILSRLPA SFASAATVSKTWNAACCHILSRPK SSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQF+
Sbjct:    1 MANKNRSSPSSATPKLMEVSGFSLMNEDLLRNILSRLPAISFASAATVSKTWNAACCHILSRPKLSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFM 113

HSP 2 Score: 189.504 bits (480), Expect = 8.982e-108
Identity = 102/140 (72.86%), Postives = 102/140 (72.86%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEKVRSRTPIIVSSVKGILGRDALSHEFRE                                     VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSM DKFVQDIKSYTSSMSGCTSPQAIIMI
Sbjct:  113 MVEKVRSRTPIIVSSVKGILGRDALSHEFRE-------------------------------------VKWIDGNIDEVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMIDKFVQDIKSYTSSMSGCTSPQAIIMI 215

HSP 3 Score: 29.261 bits (64), Expect = 8.982e-108
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = -1

Query: 3426 DGSVDQKPILEKL 3464
            DGSVDQKPILEKL
Sbjct:  217 DGSVDQKPILEKL 229

HSP 4 Score: 130.954 bits (328), Expect = 7.553e-29
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = -2

Query: 1958 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEVCQCASVY 2173
            K  GIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNE      ++
Sbjct:  279 KARGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEPTPILPMF 350

HSP 5 Score: 107.842 bits (268), Expect = 2.575e-21
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = -1

Query: 2685 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARGNYSYVMHL 2861
            AMSMETIIVGDERGQFVYRSSDVSRNV TNKKHSPDAVALVFARDRNKARG  +   H 
Sbjct:  232 AMSMETIIVGDERGQFVYRSSDVSRNVGTNKKHSPDAVALVFARDRNKARGIGNIEFHF 290

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A061G647_THECC (F-box family protein, putative isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.629e-79
Identity = 87/117 (74.36%), Postives = 93/117 (79.49%), Query Frame = -1

Query: 4062 LKPSMANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4412
            L PSM NK RSS S +T    E+ GF LMN DLL+NILSRLPA SFASAA VSK WNAAC  +LSRPK SSAISL P P VALQEVF KVMSEPIRPHFA+ASVGPGF  KDVLQF+
Sbjct:   32 LTPSMENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGPGFHFKDVLQFM 148

HSP 2 Score: 147.132 bits (370), Expect = 4.629e-79
Identity = 81/141 (57.45%), Postives = 90/141 (63.83%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNID-EVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEK+ SRTPII+SSV GI GRDAL+HEFRE                                     VKW +GN+D EV   TGIVL VG+VPGLKV+ IPLL+Q+K PQGSM DKFV DIKSYTSSMSGCTSP AIIMI
Sbjct:  148 MVEKLGSRTPIILSSVSGIFGRDALTHEFRE-------------------------------------VKWTNGNVDDEVSTYTGIVLNVGYVPGLKVEAIPLLQQKKTPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMI 251

HSP 3 Score: 26.5646 bits (57), Expect = 4.629e-79
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = -1

Query: 3426 LIL*DGSVDQKPILEKL 3476
            +++ D  VDQKPI+EKL
Sbjct:  249 IMIGDADVDQKPIIEKL 265

HSP 4 Score: 102.834 bits (255), Expect = 2.885e-19
Identity = 45/65 (69.23%), Postives = 58/65 (89.23%), Query Frame = -2

Query: 1979 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV 2173
            K  G+G+IEFHFALS GV+AIGPR KAASV+V++S +VTWLTA+REGQQE+LDGQ +L+ I+NE+
Sbjct:  315 KAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQHILDHINNEM 379

HSP 5 Score: 90.5077 bits (223), Expect = 2.695e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = -1

Query: 2709 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARG 2861
            AMSMETIIVGDERGQFVY+S DVSRNVS++ K SPDAVALVFARDR+KA G
Sbjct:  268 AMSMETIIVGDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFARDRDKAHG 318

HSP 6 Score: 87.0409 bits (214), Expect = 3.126e-14
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = -2

Query:  527 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSSTXXXXXXXXXXXXXXXXSTIINAVDKKEAFG 733
            GD EYLYVDGVGIRTGDYFQFY SDPKTAL S RNVSSTLR LKL+WD+KS+ S S  INA DKKE FG
Sbjct:  419 GDEEYLYVDGVGIRTGDYFQFYLSDPKTALPSCRNVSSTLRNLKLEWDTKSAHSTSAGINATDKKEIFG 487

HSP 7 Score: 73.559 bits (179), Expect = 5.691e-10
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = -2

Query: 1577 QMENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG*DMKHF 1717
            +MEN+ + VDLYIGVTR RNCSVGSDKPR+MT+LALHG+ G D ++ 
Sbjct:  378 EMENHTEYVDLYIGVTRLRNCSVGSDKPRLMTSLALHGVVGGDEEYL 424

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A061FY98_THECC (F-box family protein, putative isoform 3 OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.978e-77
Identity = 84/113 (74.34%), Postives = 90/113 (79.65%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            M NK RSS S +T    E+ GF LMN DLL+NILSRLPA SFASAA VSK WNAAC  +LSRPK SSAISL P P VALQEVF KVMSEPIRPHFA+ASVGPGF  KDVLQF+
Sbjct:    1 MENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGPGFHFKDVLQFM 113

HSP 2 Score: 147.132 bits (370), Expect = 1.978e-77
Identity = 81/141 (57.45%), Postives = 90/141 (63.83%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNID-EVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEK+ SRTPII+SSV GI GRDAL+HEFRE                                     VKW +GN+D EV   TGIVL VG+VPGLKV+ IPLL+Q+K PQGSM DKFV DIKSYTSSMSGCTSP AIIMI
Sbjct:  113 MVEKLGSRTPIILSSVSGIFGRDALTHEFRE-------------------------------------VKWTNGNVDDEVSTYTGIVLNVGYVPGLKVEAIPLLQQKKTPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMI 216

HSP 3 Score: 26.5646 bits (57), Expect = 1.978e-77
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -1

Query: 3426 FLIL*DGSVDQKPILEKL 3479
             +++ D  VDQKPI+EKL
Sbjct:  213 IIMIGDADVDQKPIIEKL 230

HSP 4 Score: 103.219 bits (256), Expect = 1.091e-19
Identity = 45/65 (69.23%), Postives = 58/65 (89.23%), Query Frame = -2

Query: 1979 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV 2173
            K  G+G+IEFHFALS GV+AIGPR KAASV+V++S +VTWLTA+REGQQE+LDGQ +L+ I+NE+
Sbjct:  280 KAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQHILDHINNEM 344

HSP 5 Score: 90.5077 bits (223), Expect = 1.192e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = -1

Query: 2709 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARG 2861
            AMSMETIIVGDERGQFVY+S DVSRNVS++ K SPDAVALVFARDR+KA G
Sbjct:  233 AMSMETIIVGDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFARDRDKAHG 283

HSP 6 Score: 72.4034 bits (176), Expect = 8.641e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = -2

Query: 1595 QMENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG 1717
            +MEN+ + VDLYIGVTR RNCSVGSDKPR+MT+LALHG+ G
Sbjct:  343 EMENHTEYVDLYIGVTRLRNCSVGSDKPRLMTSLALHGVVG 383

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Match: A0A061G007_THECC (F-box family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014665 PE=4 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.083e-77
Identity = 84/113 (74.34%), Postives = 90/113 (79.65%), Query Frame = -1

Query: 4062 MANKNRSSPSSATPKLMEASGFSLMNEDLLRNILSRLPATSFASAATVSKTWNAACCHILSRPKFSSAISLKPLPLVALQEVFDKVMSEPIRPHFAIASVGPGFEIKDVLQFV 4400
            M NK RSS S +T    E+ GF LMN DLL+NILSRLPA SFASAA VSK WNAAC  +LSRPK SSAISL P P VALQEVF KVMSEPIRPHFA+ASVGPGF  KDVLQF+
Sbjct:    1 MENKKRSSASPSTTNKKESKGFCLMNHDLLQNILSRLPAASFASAACVSKAWNAACNRVLSRPKLSSAISLNPSPRVALQEVFGKVMSEPIRPHFAMASVGPGFHFKDVLQFM 113

HSP 2 Score: 146.747 bits (369), Expect = 3.083e-77
Identity = 81/141 (57.45%), Postives = 90/141 (63.83%), Query Frame = -3

Query: 3559 MVEKVRSRTPIIVSSVKGILGRDALSHEFREACSXXXXXXXXXXXXXYHCDA*IFMFLFLNSGFIKCQVKWIDGNID-EVPVNTGIVLTVGFVPGLKVDVIPLLRQRKAPQGSMTDKFVQDIKSYTSSMSGCTSPQAIIMI 3978
            MVEK+ SRTPII+SSV GI GRDAL+HEFRE                                     VKW +GN+D EV   TGIVL VG+VPGLKV+ IPLL+Q+K PQGSM DKFV DIKSYTSSMSGCTSP AIIMI
Sbjct:  113 MVEKLGSRTPIILSSVSGIFGRDALTHEFRE-------------------------------------VKWTNGNVDDEVSTYTGIVLNVGYVPGLKVEAIPLLQQKKTPQGSMIDKFVMDIKSYTSSMSGCTSPLAIIMI 216

HSP 3 Score: 26.5646 bits (57), Expect = 3.083e-77
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = -1

Query: 3426 FLIL*DGSVDQKPILEKL 3479
             +++ D  VDQKPI+EKL
Sbjct:  213 IIMIGDADVDQKPIIEKL 230

HSP 4 Score: 102.449 bits (254), Expect = 3.019e-19
Identity = 45/65 (69.23%), Postives = 58/65 (89.23%), Query Frame = -2

Query: 1979 KLSGIGNIEFHFALSKGVSAIGPRLKAASVRVQDSYTVTWLTARREGQQEILDGQQMLEDIDNEV 2173
            K  G+G+IEFHFALS GV+AIGPR KAASV+V++S +VTWLTA+REGQQE+LDGQ +L+ I+NE+
Sbjct:  280 KAHGVGDIEFHFALSNGVTAIGPRFKAASVKVRNSESVTWLTAKREGQQEVLDGQHILDHINNEM 344

HSP 5 Score: 90.5077 bits (223), Expect = 2.645e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = -1

Query: 2709 AMSMETIIVGDERGQFVYRSSDVSRNVSTNKKHSPDAVALVFARDRNKARG 2861
            AMSMETIIVGDERGQFVY+S DVSRNVS++ K SPDAVALVFARDR+KA G
Sbjct:  233 AMSMETIIVGDERGQFVYKSGDVSRNVSSSLKCSPDAVALVFARDRDKAHG 283

HSP 6 Score: 77.411 bits (189), Expect = 3.054e-11
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = -2

Query:  617 GDSEYLYVDGVGIRTGDYFQFYHSDPKTALSSSRNVSST 733
            GD EYLYVDGVGIRTGDYFQFY SDPKTAL S RNVSST
Sbjct:  384 GDEEYLYVDGVGIRTGDYFQFYLSDPKTALPSCRNVSST 422

HSP 7 Score: 73.559 bits (179), Expect = 5.043e-10
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = -2

Query: 1577 QMENNMDCVDLYIGVTRRRNCSVGSDKPRMMTTLALHGIEG*DMKHF 1717
            +MEN+ + VDLYIGVTR RNCSVGSDKPR+MT+LALHG+ G D ++ 
Sbjct:  343 EMENHTEYVDLYIGVTRLRNCSVGSDKPRLMTSLALHGVVGGDEEYL 389

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
FBL91_ARATH	4.493e-32	49.11	F-box/LRR-repeat protein At5g63520 OS=Arabidopsis ...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097480 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2P060_GOSRA	4.263e-108	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MMT3_GOSRA	4.332e-108	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QS39_GOSRA	4.437e-108	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RL09_GOSRA	5.083e-108	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MMT0_GOSRA	6.799e-108	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QJF9_GOSRA	8.093e-108	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2P056_GOSRA	8.982e-108	96.46	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061G647_THECC	4.629e-79	74.36	F-box family protein, putative isoform 4 (Fragment...	[more]
A0A061FY98_THECC	1.978e-77	74.34	F-box family protein, putative isoform 3 OS=Theobr...	[more]
A0A061G007_THECC	3.083e-77	74.34	F-box family protein, putative isoform 2 OS=Theobr...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019494	FIST, C-domain	PFAM	PF10442	FIST_C	coord: 18..118 e-value: 4.2E-10 score: 39.6
None	No IPR available	PANTHER	PTHR14939:SF5	F-BOX ONLY PROTEIN 22	coord: 6..153
None	No IPR available	PANTHER	PTHR14939	FAMILY NOT NAMED	coord: 6..153

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097480 ID=g.barbadense_cottongen_reftransV1_0097480; Name=g.barbadense_cottongen_reftransV1_0097480; organism=Gossypium barbadense; type=contig; length=4502bp
ATCAGACCGCACAAGTAACATATTTTCATTGTTATGTTCATGCAAATTTA
TAGAAAAAAAAATTCTACACCTATGGTCAATGGAATCTACTCAGCTTCTT
CCCCTCATTTCTCAATAACAATTTTCAAATCAGTACAACAATTTAACCCA
AAAACACATGAAAGAAAATGGCAGTCTATATTGCTGATAGAACATGAAAA
TGCCAACAAAGATCTAGTTTTTTCATAAGGTTGTTGGCTTTGTTATGCAC
TTTTTGACCCCAAAAACTCAGAATGGGTAACTTTTAATGCTCTGGAGGTG
TATACGACATTACCAGATAAACGGTGCTATAGACGTGTAGATGGCAACGA
GCAGAGCCGCCTTCATCTCCATTTGCAGTTAAGCTTGTACAGCCACGCCC
AATTTCCCCACCACAAAATGTTCCGGCTACCGGAACCCTAGGAAAGTTAT
CCAAGAATGGGGAACTATCAACATTAAGTTGACCGAAGAATGATTCCCCA
CGTCCAAGGCATGAAAAGATAAAACCTCCAAAAGCTTCCTTCTTATCAAC
GGCATTGATAATTGTGCTTTTGCTGAGGCTGCTTTTGGAATCCCAATCCA
ACTTCAATTTTCTAAGGGTTGAGGAGACATTTCTGCTTGAAGATAATGCA
GTCTTTGGATCCGAATGGTAAAACTGAAAATAGTCACCAGTTCTGATACC
AACACCATCAACATAAAGGTACTCTGAATCTCCTCTGTTGAACAACATTA
ATCCGTTTGATTAAAATAAAAAAGGAAAGTAAATGAATGTGTACAAATGC
AATCCTTGCCTAAGTTTTATTTGCAGCCACGTGTGATACAGAGAGAAGTA
AAAACAACTGTTAGACTAAGTTTTTACCACTGAAGTATGAAAAACGGTTC
TTGTGCATCACTATGGTTGGCCAGAAAAACGAAAACAGAAGAATGATATT
GAAGTTTTGTTGATCAATGTCACATCATTGATCTTAGAATGACTTATTGA
TTCTTGAAGAGAGAGATCTTATTACAATGTATGGTTAACCAAATGCCACT
ATTAATAGACAAATAATTTACTGTACTCACTGTATTCTAATTGACTTGCA
CCAAACAGTGAAAGTATCTACTAATCCGAAAGCAAATGCTCTTATTGCAA
GTAAAGAAGAATAACCGGCTCACTTGTAATTCATAAACAAACGCCAAGTA
TCATACAACAGAAAGTATAGCAAAGGGCCCCAATATTCCTTAAACCTTCA
CCATTTAAGCAAGTTCATCTCTAATAAGTCTATGAATGCAGCAGATGAGT
GGCTAACTACCATAAGTAAGTCGGCAACTATACACTTGGCTCTACAACTC
AATTTGTGCCAGCAACTAACATGACAATTATGTAGATAGCAAATATATAC
TCAAGAGGACAGGTTAACTGTGGAGAGAGAAAAGGTACACAACAAGAAGG
TTTGATTGCTGAACATGACAATTATGTAATGTGTTTGTACACATACAGGT
GTCTGGGAGTGCAACCCATACAACCTAGCCCCTGGCATGCATGCCATATT
TTCTGTGAAACCAAACAAAAATGGGGAAAATGTTTCATATCTTACCCTTC
AATTCCATGGAGTGCCAAGGTTGTCATCATCCTAGGCTTATCTGAGCCAA
CAGAACAGTTCCGTCGCCTTGTAACCCCAATGTAAAGATCAACACAGTCC
ATATTATTTTCCATCTGCCATTTATTTTCACTTGAAAAGGTTTAAGAGTA
TGGATGAATCATAAAGAATAAGCAGTGCTCATAAGCACATGAATCTTTTT
GATATGGTATCAACACAATGGATCAAAACATCGGTAGAATGGGTGTAGGC
TTCAAGACAAAAGAATCAATTAGGAGCACAAAATATTTACATTAAACAGT
CAGTTCGCATTGCATCCGCATATTTTAAATATTTCTATAAAGCTCATGCT
TTCTTATATACACAGAAGCACATTGACATACCTCATTATCAATATCTTCC
AGCATCTGTTGACCATCAAGAATCTCCTGCTGTCCTTCTCTTCTAGCAGT
GAGCCAGGTGACAGTATAAGAGTCTTGCACTCTAACAGAAGCTGCCTTAA
GCCTTGGTCCAATTGCTGAGACACCCTTTGACAGTGCAAAATGAAATTCA
ATATTCCCTATACCTGACAATTTAACACACGTCAGCATAGGCTACCAAAT
TGGGATGAAAAGAGGAGAGAAAATGACAAAGAAGTTATGTGTGCATATTT
ACAAGAATATGCATTTTTAGAAATTTTCATTTTCTTTCCTCATTTTCAGC
TTCACAAAGCAATGGATGGAAAAGTGATTACTTTTTCTTTCCATTTTTTA
ATATTTCCTGCCAAGCACCCCAATGAAAAGAAAATATATATTTTCTATTT
TTCTACTTCACTCCTTCAATTTTCCATCTTTCCATCTTTCTTTCCACCTT
ACCAATTAAAGCCTATACGATGTAACCAATGACAAGAAGAACCATGAACG
AGCCCTTAGGCTTTGCTCAACACGAAGGATGGAAAGGAGTAAGGATTGAA
ATGTAATACAGTTTATATGGACTTTCTCAGGAATGAGAACAACTATCTTC
ACCTATTACACTTGAAAAAGGAAAATTATGCACGTGTGACAATTAAAACA
ATTAATAAGCTTCATAAAATTTGAGAAAAATAAATAAATGCATAACGTAG
GAATAGTTACCACGGGCTTTGTTTCTATCTCTTGCAAATACAAGAGCAAC
AGCATCAGGAGAGTGTTTTTTATTAGTGCTGACATTTCTTGAGACATCAC
TACTTCTATACACAAACTGACCTCTCTCATCACCCACAATGATTGTTTCC
ATAGACATAGCATAATCTGAGATGGACAAGATTATCAAAGAGTATAATAA
ATCATGCGCAAATTTTCTGAATAACATGAAAAGAGGGAAAATAGAGCTAG
AACTAATCTAACAACCACCTAGGTCCTACGTACTTGGGAGCTTGGAAGAG
GTGAGAAGGAATTATCATAGAGGTCATTGATCATGTATATATGATTGACC
CAACATTGATATGTTCCACTCCATATGTTGAACAAACACTTTGAGCACGT
GTTTGTGCCACTAAGACTAGAATGTAGATGAGTGATTATTATTTTCTCAT
TAAGAATATAAATTTGATGGAAATCTGGGCCAGAGTTTAGGCAATATTTT
CTTAATTGCACGTTCCCATTCAGATTCAAAAGGAATAGTTGTGCTTGGAA
AGAAACAATAGGTACATTAGAGTGGAATCTTTTGAATTTCTGATGCATAG
ATGGTCTAAATAGTTAGTTCCCCTATGCTTACAATCAGTTCAAGCTATCA
GATGGATGAACAATTTTGTTCTATCAAAAAGCAAAATGAAAAATAAAAAT
AGGGGAAATGGAAAAAAAACTTGCCTAACTTTTCAAGAATAGGTTTCTGG
TCAACACTTCCATCCTACAAAATCAAGAAGCCACATCAAAGCACAACCAA
GTAAGAGACCCTAACTTGTAGTGGAAGAGGACACACAACAAACATGGCAA
CTTACTCCGATCATTATAATCGCCTGCGGTGATGTGCAACCTGACATAGA
GGATGTGTAAGACTTAATATCCTGCACGAACTTGTCAGTCATTGACCCTT
GAGGTGCCTTCCTCTGTCGTAAAAGAGGGATCACATCGACTTTGAGTCCC
GGAACAAATCCAACAGTCAATACGATGCCAGTATTTACAGGAACTTCATC
AATATTACCATCAATCCACTTAACCTGACATTTTATAAAACCAGAATTTA
AAAACAAAAACATAAAAATTTAAGCATCACAATGGTAATAGAATAGGAAT
ACTTAAAATAAAAAATCATAAAAGAAAGAACAAGCCTCTCTAAATTCATG
AGAAAGTGCATCTCGTCCAAGAATTCCTTTAACAGAAGATACAATAATCG
GAGTTCTTGATCGCACTTTTTCTACCATCTGCCCAGTAAACACAGGTTAA
AATTTTAAAGAAAATTAACTTCAACCCATTAGGGAAGAGAAAGAGAGATT
TTTAGAATTCATACAAATTGCAGAACATCTTTGATTTCAAACCCAGGACC
AACACTTGCAATAGCAAAATGAGGTCGAATTGGTTCTGACATAACCTTGT
CAAAAACTTCTTGTAAAGCAACAAGAGGCAAAGGCTTGAGGGAGATGGCG
GAGGAGAACTTAGGGCGAGAGAGGATATGACAGCAAGCAGCGTTCCAAGT
CTTAGAGACGGTGGCAGCGGAAGCGAAAGAGGTGGCAGGTAGCCTTGAAA
GTATGTTTCGAAGAAGATCCTCATTCATTAGAGAAAACCCACTGGCTTCC
ATGAGTTTGGGTGTTGCTGAAGAAGGTGATGATCGGTTCTTATTCGCCAT
TGAAGGCTTAAGCAAAGGAACACTCTCAACAGCTCTTTTCAAGTCTTTCT
TGTTTTCTGGGCTTCAGTTTCATTCGACTTTATTTCATAGTTTCCTTTTT
CG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR019494	FIST_C

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g.barbadense_cottongen_reftransV1_0097480, g.barbadense_cottongen_reftransV1_0097480 (contig) Gossypium barbadense

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