g.barbadense_cottongen_reftransV1_0097479, g.barbadense_cottongen_reftransV1_0097479 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097479
Unique Name	g.barbadense_cottongen_reftransV1_0097479
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2193

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0097479:12..2193 . Dt08:47135275..47138864 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF3_ARATH (G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.939e-35
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = -1

Query:  523 VMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQ------------LGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 894
            ++PPE W+QNERELKRERRKQSNRESARRSRLRKQAETEELARKVE+LTAEN  LRSE+NQL EKS+KLR  NATL++ LK ++            + ++     NKN+       +  S +KLHQLLD  PR  A
Sbjct:  247 MVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANATLLDKLKCSEPEKRVPANMLSRVKNSGAGDKNKNQGDN----DSNSTSKLHQLLDTKPRAKA 378

HSP 2 Score: 76.2554 bits (186), Expect = 2.237e-13
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = -2

Query: 1914 PTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSH-GGVYAHPAVPIVSL 2150
            P DQ N+HVYPDWAAMQAYYGPRV MPPYYNSA+A+   PPP     PQ MM PYGAPYA +Y H GGVYAHP +P+ SL
Sbjct:   21 PVDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHPPPPYMWNPQHMMSPYGAPYAAVYPHGGGVYAHPGIPMGSL 100

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.041e-35
Identity = 92/176 (52.27%), Postives = 111/176 (63.07%), Query Frame = -1

Query:  523 SSMNAKSSP----TNVPCG------VMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQE-NITNKNEDK----------------------EGE--MYEK--KSGAKLHQLLDASPRTDA 939
            SS+  K SP     N P G      +MP + W+ N+R+LKRERRKQSNRESARRSRLRKQAE EELA KV+SLTAEN  L++EIN+LT  +EKL  +N+ L+E +KNAQ     +  + N NE K                      EGE  +YEK  KSGAKLHQLLDA+PRTDA
Sbjct:  232 SSLELKDSPKEHAVNSPAGGQQPSTMMPNDSWLHNDRDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLEVMKNAQAERAADVGLGNNNEKKASTLSTANLLSRVDNAGSGDRDEGESDVYEKTTKSGAKLHQLLDANPRTDA 407

HSP 2 Score: 76.2554 bits (186), Expect = 3.035e-13
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = -2

Query: 1917 DQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2144
            DQ+N HVYPDWAAMQAYYGPRV +PPY+N AVASG +P PYMWGPPQP+MPPYG PYA +Y+HGGVYAHP VP+ +
Sbjct:   25 DQSNSHVYPDWAAMQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYGVPYAALYAHGGVYAHPGVPLAA 100

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: TAF1_TOBAC (Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.314e-33
Identity = 81/152 (53.29%), Postives = 98/152 (64.47%), Query Frame = -1

Query:  652 SDFSSYLDLCH---DIVDSAEXXXXXXXXXXXXXGLEMVKLRQSLMQLPWQRNPSSMNAKSSPTNVP--CGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLK 1092
             D  S+L  C    +I D +E              +    L  S+      RNP+S + K+SPTNV      +P E W+QNERELKRE+RKQSNRESARRSRLRKQAE EELA +V+SLTAEN TL+SEIN+L E SEKL+LENA L+E LK
Sbjct:  111 GDSKSHLRRCQPTGEINDDSEKAIVAVRPGKVGEKVMGTVLSPSMTTTLEMRNPASTHLKASPTNVSQLSPALPNEAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENAALMERLK 262

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF2_ARATH (G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.323e-26
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = -1

Query:  526 PEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKL--HQLLDASPRTD 885
            P+ W  NE+E+KRE+RKQSNRESARRSRLRKQAETE+L+ KV++L AEN +LRS++ QL  +SEKLRLEN  +++ LK    G T EN+ ++  DK   +    SG+K   HQLL+ASP TD
Sbjct:  242 PQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQLKAQATGKT-ENLISR-VDKNNSV----SGSKTVQHQLLNASPITD 355

HSP 2 Score: 55.8398 bits (133), Expect = 7.203e-7
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = -2

Query: 2037 DQANIHVYP-DWAAMQAYYGPRVTMPPYYNSAVASGH 2144
            +Q+N+HVY  DWAAMQAYYGPRV +P YYNS +A GH
Sbjct:   23 EQSNVHVYHHDWAAMQAYYGPRVGIPQYYNSNLAPGH 59

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: EMBP1_WHEAT (DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.803e-17
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = -1

Query:  664 NERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLV 867
            +ERELKRERRKQSNRESARRSRLRKQ E EELA+KV  LTA N TLRSE++QL +  + +  EN  L+
Sbjct:  247 DERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENKKLM 314

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 43/76 (56.58%), Postives = 63/76 (82.89%), Query Frame = -1

Query:  652 VWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLK 879
            V +++ERELKR++RKQSNRESARRSRLRKQAE E+L ++VESL+ EN +LR E+ +L+ + +KL+ EN ++ + L+
Sbjct:  215 VPVKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQ 290

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: HBP1A_WHEAT (Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.657e-14
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = -1

Query:  577 VPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNE--DKEGEMYEK 906
            VP G    E W  +ERELK+++RK SNRESARRSRLRKQAE EEL ++ E+L +EN++LR E++++ ++ E+L  +N +L   L  +  G   + + + NE  D  G  ++K
Sbjct:  238 VPSGSARGEQW--DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKLGESGGGGGSDAVPDMNERGDTNGGSHQK 347

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Match: CPRF3_PETCR (Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.255e-13
Identity = 44/102 (43.14%), Postives = 69/102 (67.65%), Query Frame = -1

Query:  655 SSMNAKSSPTNV--PCGV-----MPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGL 939
             S+  +S+P +V  P  +     M P+  + +ERELKR+RRKQSNRESARRSRLRKQA+++EL  ++++L+ EN  LR  + +++E   ++  EN ++ E L
Sbjct:  162 GSLEVRSNPLDVAAPGAIVVHDGMLPDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENHSIKEEL 263

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2R585_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G153100 PE=4 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.806e-87
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948
            RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA
Sbjct:  177 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 318

HSP 2 Score: 103.605 bits (257), Expect = 1.277e-20
Identity = 53/61 (86.89%), Postives = 53/61 (86.89%), Query Frame = -3

Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363
            G Y    V  TAAPVE PTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ
Sbjct:   42 GVYAHPAVPITAAPVEAPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 102

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2PCD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G153100 PE=4 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 6.748e-87
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948
            RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA
Sbjct:  221 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 362

HSP 2 Score: 108.227 bits (269), Expect = 5.606e-22
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = -2

Query: 1917 DEGXXXXXXXXSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2192
            DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPI +
Sbjct:    5 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPITA 96

HSP 3 Score: 103.605 bits (257), Expect = 1.931e-20
Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = -3

Query: 1181 FCLLCLACGEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1387
            +  +    G Y    V  TAAPVE PTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ
Sbjct:   77 YATIYSHGGVYAHPAVPITAAPVEAPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 145

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BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2MYP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G153100 PE=4 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 6.971e-87
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948
            RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA
Sbjct:  220 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 361

HSP 2 Score: 108.227 bits (269), Expect = 5.715e-22
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = -2

Query: 1917 DEGXXXXXXXXSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2192
            DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPI +
Sbjct:    5 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPITA 96

HSP 3 Score: 103.605 bits (257), Expect = 1.935e-20
Identity = 53/69 (76.81%), Postives = 55/69 (79.71%), Query Frame = -3

Query: 1181 FCLLCLACGEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1387
            +  +    G Y    V  TAAPVE PTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ
Sbjct:   77 YATIYSHGGVYAHPAVPITAAPVEAPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 145

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0B0PXN4_GOSAR (Common plant regulatory factor 1 OS=Gossypium arboreum GN=F383_12115 PE=4 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.327e-86
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 948
            RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENIT+KNEDKEGEMYEKKSGAKLHQLLDASPRTDA
Sbjct:  220 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITSKNEDKEGEMYEKKSGAKLHQLLDASPRTDA 361

HSP 2 Score: 106.301 bits (264), Expect = 2.568e-21
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = -2

Query: 1917 DEGXXXXXXXXSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2192
            DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYA IYSHGGVYAHPAVPI +
Sbjct:    5 DEGKSKSDKSSSPVPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYAAIYSHGGVYAHPAVPITA 96

HSP 3 Score: 105.531 bits (262), Expect = 4.403e-21
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = -3

Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363
            G Y    V  TAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ
Sbjct:   85 GVYAHPAVPITAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 145

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061DTT0_THECC (G-box binding factor 3, putative isoform 2 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 7.899e-67
Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG  +E + N  ++KEGEMYEK   SGAKLHQLLDASPR DA
Sbjct:  178 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 321

HSP 2 Score: 85.5001 bits (210), Expect = 8.736e-15
Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3

Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363
            G Y    V   AA VETPTKSSGN+ERG  KK+KGFDGLAMSIGNGTAEN EG  EPRLSQ
Sbjct:   42 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 102

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061DSN3_THECC (G-box binding factor 3, putative isoform 4 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.513e-66
Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG  +E + N  ++KEGEMYEK   SGAKLHQLLDASPR DA
Sbjct:  207 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 350

HSP 2 Score: 85.5001 bits (210), Expect = 1.384e-14
Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3

Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363
            G Y    V   AA VETPTKSSGN+ERG  KK+KGFDGLAMSIGNGTAEN EG  EPRLSQ
Sbjct:   71 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 131

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061E0L4_THECC (G-box binding factor 3, putative isoform 3 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.502e-66
Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG  +E + N  ++KEGEMYEK   SGAKLHQLLDASPR DA
Sbjct:  220 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 363

HSP 2 Score: 87.4261 bits (215), Expect = 2.981e-15
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = -2

Query: 1917 VPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2153
            VPT   N+HVYPDWAAMQAYYGPRV MPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVP+ +
Sbjct:   19 VPT--TNVHVYPDWAAMQAYYGPRVAMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPLAA 95

HSP 3 Score: 85.5001 bits (210), Expect = 1.467e-14
Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3

Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363
            G Y    V   AA VETPTKSSGN+ERG  KK+KGFDGLAMSIGNGTAEN EG  EPRLSQ
Sbjct:   84 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 144

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A061DUQ2_THECC (G-box binding factor 3, putative isoform 1 OS=Theobroma cacao GN=TCM_005210 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.102e-66
Identity = 119/144 (82.64%), Postives = 128/144 (88.89%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEK--KSGAKLHQLLDASPRTDA 948
            RNP++MNAKSSPT+VPCGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEEL RKVESLT ENATLRSEINQLTEKSEKLRLENA LVE LK+ QLG  +E + N  ++KEGEMYEK   SGAKLHQLLDASPR DA
Sbjct:  223 RNPTTMNAKSSPTSVPCGVMPSEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLENANLVEELKHTQLGQAKEIVMNNKDNKEGEMYEKSSNSGAKLHQLLDASPRADA 366

HSP 2 Score: 97.0561 bits (240), Expect = 2.268e-18
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = -2

Query: 1917 VPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2153
            VPTDQ N+HVYPDWAAMQAYYGPRV MPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVP+ +
Sbjct:   19 VPTDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAVASGHAPPPYMWGPPQPMMPPYGAPYATIYSHGGVYAHPAVPLAA 97

HSP 3 Score: 85.5001 bits (210), Expect = 1.516e-14
Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = -3

Query: 1181 GEYYGNIVMQTAAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQ 1363
            G Y    V   AA VETPTKSSGN+ERG  KK+KGFDGLAMSIGNGTAEN EG  EPRLSQ
Sbjct:   86 GVYAHPAVPLAAATVETPTKSSGNSERGLMKKLKGFDGLAMSIGNGTAENAEGGPEPRLSQ 146

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2SHR5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105100 PE=4 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.709e-63
Identity = 119/144 (82.64%), Postives = 124/144 (86.11%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKK--SGAKLHQLLDASPRTDA 948
            RN  +MNA SS   V CGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLT+ENA LRSEINQLTE SEK+RLENA LVE LKNAQLGH QENI NK EDKEGEM EK+  SGAKLHQLLD SPR DA
Sbjct:  220 RNTPTMNAMSSAMGVHCGVMPTEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLENAILVEELKNAQLGHAQENILNKKEDKEGEMGEKRSDSGAKLHQLLDPSPRDDA 363

HSP 2 Score: 77.7962 bits (190), Expect = 5.503e-12
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = -3

Query: 1175 AAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQRF 1330
            A PVETPTKS GNTE+G  KK+KGFDGLA+SIGNGTAEN EG A+PR S   
Sbjct:   94 AGPVETPTKSPGNTEQGLMKKLKGFDGLAISIGNGTAENAEGRAKPRPSHSL 145

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Match: A0A0D2SB11_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G105100 PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.267e-63
Identity = 119/144 (82.64%), Postives = 124/144 (86.11%), Query Frame = -1

Query:  523 RNPSSMNAKSSPTNVPCGVMPPEVWMQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLENATLVEGLKNAQLGHTQENITNKNEDKEGEMYEKK--SGAKLHQLLDASPRTDA 948
            RN  +MNA SS   V CGVMP EVW+QNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLT+ENA LRSEINQLTE SEK+RLENA LVE LKNAQLGH QENI NK EDKEGEM EK+  SGAKLHQLLD SPR DA
Sbjct:  242 RNTPTMNAMSSAMGVHCGVMPTEVWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLENAILVEELKNAQLGHAQENILNKKEDKEGEMGEKRSDSGAKLHQLLDPSPRDDA 385

HSP 2 Score: 93.2041 bits (230), Expect = 5.874e-17
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = -2

Query: 1917 VPTDQANIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHXXXXXXXXXXXXXXXXXXXXXATIYSHGGVYAHPAVPIVS 2153
            VPTDQ NIHVYPDWAAMQAYYGP V MPPYY+SAVASGHAPPPYMWGP QPMMP YGAPYA IYSHGGVYAHPAVP+ S
Sbjct:   19 VPTDQNNIHVYPDWAAMQAYYGPHVNMPPYYSSAVASGHAPPPYMWGPTQPMMPSYGAPYAAIYSHGGVYAHPAVPLAS 97

HSP 3 Score: 77.7962 bits (190), Expect = 6.590e-12
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = -3

Query: 1175 AAPVETPTKSSGNTERGSTKKMKGFDGLAMSIGNGTAENDEGAAEPRLSQRF 1330
            A PVETPTKS GNTE+G  KK+KGFDGLA+SIGNGTAEN EG A+PR S   
Sbjct:  109 AGPVETPTKSPGNTEQGLMKKLKGFDGLAISIGNGTAENAEGRAKPRPSHSL 160

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
GBF3_ARATH	3.939e-35	58.82	G-box-binding factor 3 OS=Arabidopsis thaliana GN=...	[more]
CPRF1_PETCR	7.041e-35	52.27	Common plant regulatory factor 1 OS=Petroselinum c...	[more]
TAF1_TOBAC	1.314e-33	53.29	Transcriptional activator TAF-1 (Fragment) OS=Nico...	[more]
GBF2_ARATH	6.323e-26	56.56	G-box-binding factor 2 OS=Arabidopsis thaliana GN=...	[more]
EMBP1_WHEAT	3.803e-17	67.65	DNA-binding protein EMBP-1 OS=Triticum aestivum PE...	[more]
GBF1_ARATH	1.710e-16	56.58	G-box-binding factor 1 OS=Arabidopsis thaliana GN=...	[more]
HBP1A_WHEAT	3.657e-14	43.75	Transcription factor HBP-1a OS=Triticum aestivum P...	[more]
CPRF3_PETCR	3.255e-13	43.14	Light-inducible protein CPRF3 OS=Petroselinum cris...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097479 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2R585_GOSRA	1.806e-87	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PCD2_GOSRA	6.748e-87	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MYP5_GOSRA	6.971e-87	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PXN4_GOSAR	4.327e-86	99.30	Common plant regulatory factor 1 OS=Gossypium arbo...	[more]
A0A061DTT0_THECC	7.899e-67	82.64	G-box binding factor 3, putative isoform 2 OS=Theo...	[more]
A0A061DSN3_THECC	1.513e-66	82.64	G-box binding factor 3, putative isoform 4 OS=Theo...	[more]
A0A061E0L4_THECC	2.502e-66	82.64	G-box binding factor 3, putative isoform 3 OS=Theo...	[more]
A0A061DUQ2_THECC	3.102e-66	82.64	G-box binding factor 3, putative isoform 1 OS=Theo...	[more]
A0A0D2SHR5_GOSRA	2.709e-63	82.64	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SB11_GOSRA	5.267e-63	82.64	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..184
None	No IPR available	GENE3D	1.20.5.170		coord: 117..182 e-value: 1.3E-19 score: 69.5
None	No IPR available	PANTHER	PTHR22952	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	coord: 60..206
None	No IPR available	PANTHER	PTHR22952:SF144	G-BOX-BINDING FACTOR 2-RELATED	coord: 60..206
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 126..182
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 123..187 e-value: 4.0E-22 score: 89.5
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 123..185 e-value: 2.1E-21 score: 75.7
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 130..145
IPR004827	Basic-leucine zipper domain	PROSITE	PS50217	BZIP	coord: 125..188 score: 13.748

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097479 ID=g.barbadense_cottongen_reftransV1_0097479; Name=g.barbadense_cottongen_reftransV1_0097479; organism=Gossypium barbadense; type=contig; length=2193bp
CTGCTATGTTCTTTTTCCTTTTTAATTATCATATATTTGAAAGATGAAGA
TTAGTTTCCAATGCTTTACGAAATATTCCAACATTAACTCCTTTCTCAAG
ACATCCAAGTAAGACATGTTTTGTTCTTTCACACATCACATACAGTCTAA
ATCCCTTTTCAAGGCATTAAAAATTACATCTTATTATTATTATTTAAAGG
TTCTCAATACCCTTTTCCTTAAAACACATTATCTAATTTCTCCTTAATGT
ACATTAACCTTTTTGTTTTTTTCAGGGCTTTCTCAGCACTCTGATTTTTA
AATAAAAAATTACATCAGTTCTGCCATGAGAGAGCTAGCTTACAGTGTCC
CAAACATAGTTTCAATCCCCTAACAAACACCTACTATTTCATCCTTCTGC
TAACTGTTAGCAGTAGTTTTGGGCTTGTAAATGATGCCAAAAGCTACACG
GTTTTGTCCGATTTAAAAATGTCAAAAATAACTCAGGTGTAAACTGTGGC
TACTTACTCAGCTGGCAGCCACAGCATCAGTTCTTGGACTCGCATCCAAG
AGCTGATGCAGCTTGGCACCGGATTTTTTCTCATACATTTCACCCTCTTT
GTCCTCGTTTTTGTTCGTAATGTTTTCCTGTGTATGTCCTAGTTGAGCGT
TTTTGAGTCCCTCCACTAATGTGGCATTTTCTAGCCTTAGTTTCTCCGAT
TTTTCAGTTAGTTGATTTATTTCAGATCTGAGTGTTGCATTCTCTGCAGT
CAAGGATTCAACTTTACGGGCAAGCTCTTCCGTCTCAGCCTGCTTCCTCA
ACCTTGACCTTCTAGCAGATTCTCTATTAGATTGTTTCCTCCTTTCCCGT
TTCAGCTCTCGTTCATTCTGCATCCAGACTTCAGGAGGCATTACTCCACA
AGGTACGTTTGTAGGACTGGATTTAGCATTCATGGAGGAAGGGTTCCTCT
GCCACGGCAACTGCATTAGACTTTGCCTCAGTTTTACCATCTCCAACCCA
GTTGTGTTTCCATCACTACCATCAGTAGAACCTTCAGTCTCCGCACTGTC
CACAATATCATGACATAAGTCAAGATACGAGGAAAAATCACTTGGTTGTG
TAATCTCTGACAAACATATTCCTAAGGCAAAGCTTGATCTTAGAAAAATA
CTATTTTGTTCTGACAAGATTAACAAACCTCTGGGACAGTCTAGGTTCAG
CTGCACCCTCATCATTCTCAGCAGTACCATTGCCTATTGACATAGCAAGG
CCATCAAACCCTTTCATCTTCTTTGTCGAACCTCTTTCTGTATTTCCTGA
TGACTTAGTAGGAGTTTCCACAGGGGCTGCAGTCTGCATTACAATGTTCC
CGTAATATTCACCACATGCTAAACACAATAAGCAAAAAGTAACAACTTCC
CAGCTAATTCATTGAAGCAGTGTACATGCATGTCCATCAACAACAAACAT
GGATGAAAACAGTATAGTAACAGTTTGAAATGAATCATTTAAAAGACGAT
TCACTTGCAGCAGGTGATGATGGAATACCAAGACCATGTTATCCTTGGAT
TTCAAGAGCAAAGAGATAAAAGTGCATCAAGGTATAATATGATACAATAA
AACCAGAGTCCTGGAGTTATTTAGGGCTCAAACCATATCCTGAGGGAGAA
AAAGATGCAAATATTTTTTACTGTGTTTCTAGCTGTACCAATGAGGAATC
TGTAAGTGTTGTCAAGTTGGTAATCGTACAAAAAGACCACCGTCTAAACA
TTCAGCAATAAGAAATAAGAGAATTATGTGACCATACAAGCACCATGCAT
ACTCAAACATCAGAAACTACACATAATTTGTGACCTCTAAAACTGAAAAG
CAAAGTACACTCCTAGATAACTTGGTACAAGATTAATGCAGCAATTAAAC
GATAGTGACAAAGTAAACTTACTATAGGAACTGCAGGATGGGCATAAACT
CCCCCATGTGAGTAGATTGTTGCATAAGGTGCCCCATAAGGTGGCATCAT
AGGCTGTGGAGGACCCCACATATACGGGGGAGGAGCATGGCCAGAGGCCA
CAGCTGAGTTGTAATATGGCGGCATAGTGACTCGAGGACCATAGTATGCC
TGCATAGCAGCCCAATCGGGATAGACGTGAATATTGGCCTGATCCGTTGG
CACTGGTGAAGATGACTTGTCAGACTTAGACTTTCCTTCATCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR004827	bZIP

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity
GO:0043565	sequence-specific DNA binding

Search form

g.barbadense_cottongen_reftransV1_0097479, g.barbadense_cottongen_reftransV1_0097479 (contig) Gossypium barbadense

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