g.barbadense_cottongen_reftransV1_0097428, g.barbadense_cottongen_reftransV1_0097428 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2QWZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G211800 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 7.445e-81 Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = -1 Query: 1103 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1489 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSS+KRIIQLPDLEDESMEVETSTHLNFRER Sbjct: 1 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSDKRIIQLPDLEDESMEVETSTHLNFRER 129 HSP 2 Score: 73.559 bits (179), Expect = 2.428e-11 Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = -3 Query: 750 RRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPT 866 RRETTP SELRAEPEALDSTSRQSEANSRRRSTAEKMPT Sbjct: 129 RRETTPLSELRAEPEALDSTSRQSEANSRRRSTAEKMPT 167
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2SNW7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G211800 PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 1.366e-80 Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = -1 Query: 1103 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1489 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSS+KRIIQLPDLEDESMEVETSTHLNFRER Sbjct: 1 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSDKRIIQLPDLEDESMEVETSTHLNFRER 129 HSP 2 Score: 100.523 bits (249), Expect = 2.601e-20 Identity = 63/129 (48.84%), Postives = 69/129 (53.49%), Query Frame = -3 Query: 489 RRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT---KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRLN 866 RRETTP SELRAEPEALDSTSRQSEANSRRRSTAEKMPT + + F A K + QF+ +YNYDIVKDEPL+GRYQWVRLN Sbjct: 129 RRETTPLSELRAEPEALDSTSRQSEANSRRRSTAEKMPT----------------------------------EAELEEFFAAAEKKVKEQFAE-------------KYNYDIVKDEPLEGRYQWVRLN 210
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2PCY1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G211800 PE=4 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 3.860e-80 Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = -1 Query: 1106 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRE 1489 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSS+KRIIQLPDLEDESMEVETSTHLNFRE Sbjct: 1 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSDKRIIQLPDLEDESMEVETSTHLNFRE 128 HSP 2 Score: 75.0998 bits (183), Expect = 8.461e-12 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = -3 Query: 750 SRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPT 869 SRRETTP SELRAEPEALDSTSRQSEANSRRRSTAEKMPT Sbjct: 129 SRRETTPLSELRAEPEALDSTSRQSEANSRRRSTAEKMPT 168
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2SHH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G211800 PE=4 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 5.325e-80 Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = -1 Query: 1106 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRE 1489 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSS+KRIIQLPDLEDESMEVETSTHLNFRE Sbjct: 1 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSDKRIIQLPDLEDESMEVETSTHLNFRE 128 HSP 2 Score: 102.064 bits (253), Expect = 6.649e-21 Identity = 64/130 (49.23%), Postives = 70/130 (53.85%), Query Frame = -3 Query: 489 SRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT---KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRLN 869 SRRETTP SELRAEPEALDSTSRQSEANSRRRSTAEKMPT + + F A K + QF+ +YNYDIVKDEPL+GRYQWVRLN Sbjct: 129 SRRETTPLSELRAEPEALDSTSRQSEANSRRRSTAEKMPT----------------------------------EAELEEFFAAAEKKVKEQFAE-------------KYNYDIVKDEPLEGRYQWVRLN 211
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0B0NPG0_GOSAR (Cyclin-dependent kinase inhibitor 7-like protein OS=Gossypium arboreum GN=F383_16914 PE=4 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 2.091e-79 Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = -1 Query: 1103 MRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1489 MRRKCRK GEIAVMELSD+GLR+RAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER Sbjct: 1 MRRKCRKIGEIAVMELSDIGLRSRAMAAATGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 129 HSP 2 Score: 95.9005 bits (237), Expect = 1.056e-18 Identity = 61/129 (47.29%), Postives = 66/129 (51.16%), Query Frame = -3 Query: 489 RRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT---KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRLN 866 RRETTPSSE RAEPE LDSTSRQSEANS RSTAEKMPT + + F A K + QF+ +YNYDIVKDEPLKGRYQWVRLN Sbjct: 129 RRETTPSSEFRAEPEELDSTSRQSEANSCSRSTAEKMPT----------------------------------EAELEEFFAAAEKKVKEQFAE-------------KYNYDIVKDEPLKGRYQWVRLN 210
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2SWQ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G074800 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.224e-51 Identity = 114/170 (67.06%), Postives = 127/170 (74.71%), Query Frame = -1 Query: 1103 KNQKTNAHNQQIPIISLALSL*KDRSR---NFFISFLIMRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEF---KATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1594 KNQK NA NQQ IISL+L R R +F+ LIMRRKCR GEIAVMEL+DVG++TRA+A TG VQKKRRRLN DG+ E K TSS STTSYIQLRSR IL D HR N CLS N DHDDDVSCCSSNI SS+KRI++LPDLEDES+EVETSTH + ER Sbjct: 105 KNQKINARNQQKQIISLSLKERGKRKREIKSFYFPILIMRRKCRTIGEIAVMELADVGVQTRAVAT-TGRVQKKRRRLN-DGNKEEERRKVTSSTTSTTSYIQLRSRTILADRHRREGNLCLSLNSDHDDDVSCCSSNIESSDKRIMELPDLEDESVEVETSTHFSSSER 272
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A0D2TZ39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G074800 PE=4 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 6.054e-51 Identity = 114/170 (67.06%), Postives = 127/170 (74.71%), Query Frame = -1 Query: 1103 KNQKTNAHNQQIPIISLALSL*KDRSR---NFFISFLIMRRKCRKFGEIAVMELSDVGLRTRAMAAATGTVQKKRRRLNGDGDAEF---KATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHLNFRER 1594 KNQK NA NQQ IISL+L R R +F+ LIMRRKCR GEIAVMEL+DVG++TRA+A TG VQKKRRRLN DG+ E K TSS STTSYIQLRSR IL D HR N CLS N DHDDDVSCCSSNI SS+KRI++LPDLEDES+EVETSTH + ER Sbjct: 105 KNQKINARNQQKQIISLSLKERGKRKREIKSFYFPILIMRRKCRTIGEIAVMELADVGVQTRAVAT-TGRVQKKRRRLN-DGNKEEERRKVTSSTTSTTSYIQLRSRTILADRHRREGNLCLSLNSDHDDDVSCCSSNIESSDKRIMELPDLEDESVEVETSTHFSSSER 272 HSP 2 Score: 85.8853 bits (211), Expect = 8.527e-15 Identity = 56/130 (43.08%), Postives = 65/130 (50.00%), Query Frame = -3 Query: 492 SSRRETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLA---TKRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 872 SS RETTP +ELRAEPE LDSTSR SE NSRRRST EKMPT + + F A K Q QF++ +YNYD V+DEPL+GRY+WVRL Sbjct: 269 SSERETTPLNELRAEPEDLDSTSRPSETNSRRRSTVEKMPT----------------------------------EAELEEFFAPAEKKLQKQFAD-------------KYNYDTVQDEPLEGRYEWVRL 351
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A061DGW5_THECC (Cyclin-dependent kinase inhibitor family protein, putative isoform 3 OS=Theobroma cacao GN=TCM_000595 PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 2.279e-46 Identity = 92/125 (73.60%), Postives = 102/125 (81.60%), Query Frame = -1 Query: 1118 MRRKCRKFGEIAVMELSDVGLRTRAMAAA-TGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHL 1489 M RKCR GEI VME+++VG+RTRAMAA T V+KKRRRLN D +A+ K TSS TTSYIQLRSRRILVDH R ENRC S N DHDDDVSCCSSNIGSSEKRII+LPDLEDES+EVETS + Sbjct: 1 MGRKCRTIGEITVMEIANVGVRTRAMAATETVKVKKKRRRLNDDEEAQVKVTSS---TTSYIQLRSRRILVDHRR-KENRCSSHNSDHDDDVSCCSSNIGSSEKRIIELPDLEDESIEVETSPYF 121
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A061DHU3_THECC (Cyclin-dependent kinase inhibitor family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_000595 PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 2.998e-46 Identity = 92/125 (73.60%), Postives = 102/125 (81.60%), Query Frame = -1 Query: 1118 MRRKCRKFGEIAVMELSDVGLRTRAMAAA-TGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHL 1489 M RKCR GEI VME+++VG+RTRAMAA T V+KKRRRLN D +A+ K TSS TTSYIQLRSRRILVDH R ENRC S N DHDDDVSCCSSNIGSSEKRII+LPDLEDES+EVETS + Sbjct: 1 MGRKCRTIGEITVMEIANVGVRTRAMAATETVKVKKKRRRLNDDEEAQVKVTSS---TTSYIQLRSRRILVDHRR-KENRCSSHNSDHDDDVSCCSSNIGSSEKRIIELPDLEDESIEVETSPYF 121 HSP 2 Score: 69.707 bits (169), Expect = 4.892e-10 Identity = 47/124 (37.90%), Postives = 59/124 (47.58%), Query Frame = -3 Query: 492 ETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT-KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 860 ETTPSSELRAEPE DS S+ SE NSRRRST EK+ + + F A+ ++ Q K F +YN+D VK+EPL+GRY+WVRL Sbjct: 134 ETTPSSELRAEPEDQDSMSKPSEVNSRRRSTVEKI---------------------------------NPIKAEIEEFFASAEKDLQ----KHFTE-------KYNFDFVKEEPLEGRYEWVRL 213
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Match: A0A061DGC9_THECC (Cyclin-dependent kinase inhibitor family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_000595 PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.024e-46 Identity = 92/125 (73.60%), Postives = 102/125 (81.60%), Query Frame = -1 Query: 1118 MRRKCRKFGEIAVMELSDVGLRTRAMAAA-TGTVQKKRRRLNGDGDAEFKATSSRASTTSYIQLRSRRILVDHHRLNENRCLSPNLDHDDDVSCCSSNIGSSEKRIIQLPDLEDESMEVETSTHL 1489 M RKCR GEI VME+++VG+RTRAMAA T V+KKRRRLN D +A+ K TSS TTSYIQLRSRRILVDH R ENRC S N DHDDDVSCCSSNIGSSEKRII+LPDLEDES+EVETS + Sbjct: 1 MGRKCRTIGEITVMEIANVGVRTRAMAATETVKVKKKRRRLNDDEEAQVKVTSS---TTSYIQLRSRRILVDHRR-KENRCSSHNSDHDDDVSCCSSNIGSSEKRIIELPDLEDESIEVETSPYF 121 HSP 2 Score: 69.707 bits (169), Expect = 4.924e-10 Identity = 47/124 (37.90%), Postives = 59/124 (47.58%), Query Frame = -3 Query: 492 ETTPSSELRAEPEALDSTSRQSEANSRRRSTAEKMPTXXXXXXXXXXXXXXXXXXXXXKYXXXXXXXXXXXFSAVTTFLAT-KRQFQFSN*KRFFPPFLFTIFRYNYDIVKDEPLKGRYQWVRL 860 ETTPSSELRAEPE DS S+ SE NSRRRST EK+ + + F A+ ++ Q K F +YN+D VK+EPL+GRY+WVRL Sbjct: 135 ETTPSSELRAEPEDQDSMSKPSEVNSRRRSTVEKI---------------------------------NPIKAEIEEFFASAEKDLQ----KHFTE-------KYNFDFVKEEPLEGRYEWVRL 214 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097428 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 20
Pagesback to topSequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097428 ID=g.barbadense_cottongen_reftransV1_0097428; Name=g.barbadense_cottongen_reftransV1_0097428; organism=Gossypium barbadense; type=contig; length=2026bpback to top |