g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097403
Unique Nameg.barbadense_cottongen_reftransV1_0097403
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1917
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt02chromosomeg.barbadense_cottongen_reftransV1_0097403:1..1917 .
Dt02:48783005..48786506 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RIE1_ARATH (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 2.912e-106
Identity = 185/309 (59.87%), Postives = 213/309 (68.93%), Query Frame = -2
Query:  705 FTSSSKATMAASDPHAPLLRPRQPDGSA------ARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613
             +S S  + AA D HAPLLRPR  DGS       ARP +LA LLGR TG R  SMLVRETAAR LEERR DWGYSKPVVA D+LWN A V+ S VML+ T +E PN PIR+WIC Y LQCL HVVLVW EY RRNS R +   E        D N   D E      S   S  KRCE++NT+ SF+WWI+GFYWVV GGD LL  AP LYWL+V+FLA DVFFA+FCVVLACL+GIAL CCLPCIIA+LYA+   EG SEA+L +LP Y+F+  ++ EK   G GKM+PI  +   LA ER LL EDA
Sbjct:    1 MSSYSSDSTAARDQHAPLLRPRH-DGSFSSSSSSARPTALAVLLGRITGHRAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHE---DYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLATERTLLAEDA 305          

HSP 2 Score: 102.064 bits (253), Expect = 2.912e-106
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -1
Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            +CCICLSSYEDG +LHALPCNHHFHSTCIVKWLKM ATCPLCKYNILKG 
Sbjct:  306 DCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGT 355          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.392e-67
Identity = 144/304 (47.37%), Postives = 184/304 (60.53%), Query Frame = -2
Query:  705 TMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDE-------EDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1592
            T++  +   P+ R  +  G       L H   R   R   SMLVRETAA +LEER++DW YSKPVV LD+LWN AFV + V +LI + DE PN P+R+W+  Y +QC LH+  V +EY     RR      E G   SG  N S  +       ED G      S+  K  E+ NTM SF+WWI+GFYWV +GG  L  ++P+LYWL ++FL FDVFF +FCV LAC+IG+A+ CCLPCIIAILYA+ +QEGAS+ D+  +PK+RF    N EK S   GK   I T  G  +  ER L PEDA
Sbjct:   46 TISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMRE-PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEY----RRRRRRRHPEDGGG-SGLTNSSSQQYVSLAQLEDRG----ETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLS---GKARGIMTECGTDSPIERSLSPEDA 336          

HSP 2 Score: 81.2629 bits (199), Expect = 1.392e-67
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = -1
Query:  445 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 588
            ECCICL  YEDGV+L  LPCNHHFH TCI KWL +N+ CPLCK+NILK
Sbjct:  337 ECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.780e-66
Identity = 138/292 (47.26%), Postives = 181/292 (61.99%), Query Frame = -2
Query:  705 AHLLGRAT-GR--RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEE-----------------RGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIIN--NREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1511
            A  L RA+ GR  R  SMLVRE AA +LEER++DW YSKPVV LD++WN AFV V+  +L+ +  E P  P+R+W+  YALQC+LH+V V +EYRRRN RR + T                      EA+    N    +   G   +  SS+ K  E+ NTM SF+WWI+GFYWV +GG  L Q +PR+YWL++VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ +QEGAS+ D+  L K++F+ +   N+       G    I T  G  +  E  LL EDA
Sbjct:   60 ARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDA 351          

HSP 2 Score: 84.7297 bits (208), Expect = 2.780e-66
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            ECCICLS+YEDG +L  LPC HHFH +C+ KWL +NATCPLCKYNILK +
Sbjct:  352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 5.406e-63
Identity = 143/293 (48.81%), Postives = 186/293 (63.48%), Query Frame = -2
Query:  705 AHLLGRAT-GR---RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVT---------------DEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSL----GAGKMIPIETSSGYLANERILLP-EDA 1511
            A LL  A+ GR   R  SMLVRE AA +LEER++DW YSKPVV LD +WN AFVVV+  +L+ ++DE PN P+R+WI  Y LQC++H+V V +EYRRRNSRR                   DEE G  +S   N  E   + G   +  +S  K  E+ NTM SF+WW++GFYWV SGG  L Q +P+LYWL +VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ EQEGAS+ D+  L K++F+ + +  K ++    G G    + T  G  +     LP EDA
Sbjct:   33 ARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSR--NSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDA 323          

HSP 2 Score: 80.1073 bits (196), Expect = 5.406e-63
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588
            ECCICLS+YED  +L  LPC HHFH  C+ KWL +NATCPLCKYNILK +
Sbjct:  324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSS 373          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 9.402e-8
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  543 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 1.058e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  567 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: ZNRF3_XENLA (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.345e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = -1
Query:  445 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 594
            + +C ICL  Y DG +L  +PC H FH  C+  WL  N TCP C++NI++
Sbjct:  199 ISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 248          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.389e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  582 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGNRE 636          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.677e-7
Identity = 17/48 (35.42%), Postives = 34/48 (70.83%), Query Frame = -1
Query:  451 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 594
            + +C +C+  +EDG D+  +PC H FH  C++ WL+++ +CP+C++ +
Sbjct:  213 MNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.885e-7
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594
            L+ C +C++ Y +G  L  LPC+H +H  CI +WL  N+TCP+C+  +L  GN +
Sbjct:  700 LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGNRE 754          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2NDG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G157000 PE=4 SV=1)

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 293/295 (99.32%), Postives = 294/295 (99.66%), Query Frame = -2
Query:  705 MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1589
            MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYAITEQEGASEADLSILPKY+FQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA
Sbjct:    1 MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAITEQEGASEADLSILPKYKFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 295          

HSP 2 Score: 117.857 bits (294), Expect = 2.049e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  296 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 348          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A061EFM2_THECC (Zinc finger, C3HC4 type (RING finger) family protein isoform 1 OS=Theobroma cacao GN=TCM_011052 PE=4 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 6.247e-153
Identity = 253/296 (85.47%), Postives = 265/296 (89.53%), Query Frame = -2
Query:  705 ASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1583
            ASD HAPLLRPRQPD SAARP +LA LLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFV VSV MLI T DE  NTPIRLWIC YALQCL+HVVLVWLEYRRRN RR S  DEERG+A SGD NDSEDE+D      FGSN+SS+TKRCE+VNTM SFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQIINN  K S+GAGKM+P+ETSSGYLANERILLPEDA
Sbjct:   13 ASDSHAPLLRPRQPDASAARPATLALLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVAVSVAMLICTVDERTNTPIRLWICGYALQCLVHVVLVWLEYRRRNVRRTSARDEERGDATSGDANDSEDEQDGIERSAFGSNQSSVTKRCESVNTMVSFLWWIVGFYWVVSGGNYLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINNGGKASVGAGKMVPVETSSGYLANERILLPEDA 308          

HSP 2 Score: 113.62 bits (283), Expect = 6.247e-153
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = -1
Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            ECCICLSSYEDG DLHALPCNHHFHS CIVKWLKMNATCPLCKYNILKGNEQ
Sbjct:  309 ECCICLSSYEDGADLHALPCNHHFHSACIVKWLKMNATCPLCKYNILKGNEQ 360          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2Q7U9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172200 PE=4 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 7.802e-139
Identity = 242/300 (80.67%), Postives = 263/300 (87.67%), Query Frame = -2
Query:  705 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1604
            S   T +ASDPHAPLLR RQ D SAAR  +LA LLGR TGRRGASMLVRETAARELEERRADWGYSKPVVALD+LWNTAFVVVSVVMLI T +E PNTP+R+WIC YALQC +HVVLVWLEY+RRN+RR S   EERGE    DV DSED+EDS     N+SS+TKRCE+VNT+ASF+WWIVGFYWV+SGG+ILLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQIIN  EKPS+G GKM+P+ETSSGYLANERILLPEDA
Sbjct:    7 SDATTTSASDPHAPLLRSRQSDASAARSSALALLLGRVTGRRGASMLVRETAARELEERRADWGYSKPVVALDILWNTAFVVVSVVMLICTVNERPNTPVRVWICGYALQCSVHVVLVWLEYKRRNARRASGRGEERGE----DVTDSEDDEDS-----NQSSVTKRCESVNTLASFIWWIVGFYWVISGGNILLQQAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINIGEKPSVGVGKMVPVETSSGYLANERILLPEDA 297          

HSP 2 Score: 113.235 bits (282), Expect = 7.802e-139
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL SYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG EQV
Sbjct:  298 ECCICLCSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGTEQV 350          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2R7R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172200 PE=4 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 6.359e-138
Identity = 246/306 (80.39%), Postives = 267/306 (87.25%), Query Frame = -2
Query:  687 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDAVSYNSI 1604
            S   T +ASDPHAPLLR RQ D SAAR  +LA LLGR TGRRGASMLVRETAARELEERRADWGYSKPVVALD+LWNTAFVVVSVVMLI T +E PNTP+R+WIC YALQC +HVVLVWLEY+RRN+RR S   EERGE    DV DSED+EDS     N+SS+TKRCE+VNT+ASF+WWIVGFYWV+SGG+ILLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQIIN  EKPS+G GKM+P+ETSSGYLANERILLPEDAVSY  I
Sbjct:    7 SDATTTSASDPHAPLLRSRQSDASAARSSALALLLGRVTGRRGASMLVRETAARELEERRADWGYSKPVVALDILWNTAFVVVSVVMLICTVNERPNTPVRVWICGYALQCSVHVVLVWLEYKRRNARRASGRGEERGE----DVTDSEDDEDS-----NQSSVTKRCESVNTLASFIWWIVGFYWVISGGNILLQQAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINIGEKPSVGVGKMVPVETSSGYLANERILLPEDAVSYGII 303          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A067KPP8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04760 PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 4.316e-135
Identity = 237/306 (77.45%), Postives = 257/306 (83.99%), Query Frame = -2
Query:  705 SKATMAASDPHAPLLRPRQ--PDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSR--RISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESS---ITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1601
            + A  A S   APLL PRQ  P     RP SLA LLGRATGRRG SMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVS+ MLI TADE PNTP+R+WIC YALQCL+HVVLVWLEYRRRNSR  R  +  + + E   G+V DSEDE+ S     + SS   +TKRCE+VNTMASFLWWIVGFYWVVSGGD+LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQ++ N EKP++GAGKM+PIETSSGYLANERILLPEDA
Sbjct:    8 TSAASAESGSRAPLLLPRQEPPSSPTVRPTSLAFLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSITMLILTADEKPNTPVRIWICGYALQCLVHVVLVWLEYRRRNSRTGRDEMRRQRQQETEEGNV-DSEDEDSSDRGSGSFSSRSSVTKRCESVNTMASFLWWIVGFYWVVSGGDLLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQMMVNEEKPTVGAGKMVPIETSSGYLANERILLPEDA 312          

HSP 2 Score: 108.612 bits (270), Expect = 4.316e-135
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL  YEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  313 ECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 365          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: B9SJ31_RICCO (Cleavage and polyadenylation specificity factor, putative OS=Ricinus communis GN=RCOM_0598050 PE=4 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 6.111e-128
Identity = 230/304 (75.66%), Postives = 244/304 (80.26%), Query Frame = -2
Query:  705 HAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEER-------------GEAVSGDVNDSEDEE--DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571
            HAPLL PRQ    A R  SLA LLGR TGRRG SMLVRETAA ELEERRADWGYSKPVVALDM+WNTAFVVVS+ MLI +  E PNTPIR+WIC YALQCL+HVVLVW+EYRRRNS    V DEER              E   G+  DSEDE+  D     SN SS+ KRCE+VNTMASFLWWIVGFYWVVSGGD LLQNAP LYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRFQ+    EKPS+GAGKM+PIETSSGYLANERILLPEDA
Sbjct:  612 HAPLLHPRQ---EAPRAASLAMLLGRVTGRRGPSMLVRETAALELEERRADWGYSKPVVALDMVWNTAFVVVSITMLILSVKEKPNTPIRIWICGYALQCLVHVVLVWIEYRRRNS--RRVRDEERQQQQQQQAEVEGQHEENEGENVDSEDEDGVDRASVTSNRSSVIKRCESVNTMASFLWWIVGFYWVVSGGDELLQNAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQLTVEEEKPSVGAGKMVPIETSSGYLANERILLPEDA 910          

HSP 2 Score: 108.227 bits (269), Expect = 6.111e-128
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICL  YEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  911 ECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 963          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: V4U631_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015731mg PE=4 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 1.458e-127
Identity = 225/294 (76.53%), Postives = 249/294 (84.69%), Query Frame = -2
Query:  705 HAPLLRPRQPDGS--AARPVSLAHLLGRATGR-RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLF--GSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571
            HAPLLRPR P  S  AARP +LA LLGRATGR  G SMLVRETAARELEERRADWGYSKPVVALD++WN+AFV+VS  MLI T +E P+T IRLWIC YALQCL+HVVLVW+EYRRRN+R     DE  GE V    NDSEDEE+ G+    S  +S TKRCE++NTMASFLWWIVGFYWVVSGGD+LLQ+APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRF++ NN EK  +GAGKM+PIET+ GY+ANERILLPEDA
Sbjct:   14 HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR-RVRDDEMGGEDVRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDA 306          

HSP 2 Score: 114.775 bits (286), Expect = 1.458e-127
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2QS55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G330000 PE=4 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 6.962e-127
Identity = 211/308 (68.51%), Postives = 243/308 (78.90%), Query Frame = -2
Query:  705 FTSSSKATMAA--SDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613
            +++ + AT AA  SDPHAPLL PR  D ++   +++    GR   RRG  +L RE AARE EE+R D GYSK VVALDM+WN AFV +SVVML ST DE PNTPIRLW+C YAL C+LHVV V  EYR  N+R  S  DEERG+A +  VNDSEDEED     LFGSN+SS+ KRCE++NTM SFLW IVGFYWVVSGGDILLQNAPRLYWL VVFLAFDVFFA+ CVVLACLIGIAL CCLPCI+AILYA+ +QEGA+EADLS+L KYRFQIINN E P +GAGKM+P+E S GYLANE +LLPEDA
Sbjct:    5 YSTETPATPAAAPSDPHAPLLSPRHSDAASTAQLAMP---GR---RRGGPVLAREMAAREQEEQRVDCGYSKSVVALDMMWNAAFVALSVVMLPSTMDEKPNTPIRLWVCGYALLCMLHVVFVLWEYRWSNTRTTSAVDEERGDAAAEHVNDSEDEEDGIEMSLFGSNQSSVAKRCESLNTMVSFLWCIVGFYWVVSGGDILLQNAPRLYWLVVVFLAFDVFFAVICVVLACLIGIALCCCLPCIVAILYAVAKQEGAAEADLSVLMKYRFQIINNGEMPCVGAGKMVPVEMSGGYLANEHLLLPEDA 306          

HSP 2 Score: 107.842 bits (268), Expect = 6.962e-127
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDGVDLH+LPCNHHFHSTCI++WLK NATCPLCKYNILKGNE +
Sbjct:  307 ECCICLSSYEDGVDLHSLPCNHHFHSTCILRWLKTNATCPLCKYNILKGNEHL 359          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A067F3U6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018193mg PE=4 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 8.643e-127
Identity = 224/294 (76.19%), Postives = 247/294 (84.01%), Query Frame = -2
Query:  705 HAPLLRPRQPDGS--AARPVSLAHLLGRATGR-RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLF--GSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571
            HAPLLRPR P  S  AARP +LA LLGRATGR  G SMLVRETAARELEERRADWGYSKPVVALD++WN+AFV+VS  MLI T +E P+T IRLWIC YALQCL+HVVLVW+EYRRRN+R     DE  GE      NDSEDEE+ G+    S  +S TKRCE++NTMASFLWWIVGFYWVVSGGD+LLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADLSILPKYRF++ NN EK  +GAGKM+PIET+ GY+ANERILLPEDA
Sbjct:   14 HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR-RVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDA 306          

HSP 2 Score: 114.775 bits (286), Expect = 8.643e-127
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -1
Query:  430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588
            ECCICLSSYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV
Sbjct:  307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359          
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: B9HJG7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0008s13440g PE=4 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 1.986e-126
Identity = 215/294 (73.13%), Postives = 246/294 (83.67%), Query Frame = -2
Query:  705 SDPHAPLLRPRQ--PDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1580
            ++PHAPLLRPRQ  P    +R  +L+ LLGRATGRRG SMLVRETAAREL+ERRADWGYSKPVV+LDM+WN AFVVVSV ML+ T  E PNTPIR+WIC YALQCL+HVVLVWLEYRRRN+RR    + ++      +V +S++E+D   F S  SS+TKRCE+VNTM SFLWW+VGFYWVVSGGD+LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+  QEGASEADL  LPKY+FQ+I N EKP + AGKM+P+ETSS +L  ERILLPEDA
Sbjct:    5 NEPHAPLLRPRQDPPTSPTSRQTTLSALLGRATGRRGPSMLVRETAARELDERRADWGYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRIWICGYALQCLVHVVLVWLEYRRRNTRRERDIESQQQSTEEENVPESDEEDDRASFISPRSSVTKRCESVNTMVSFLWWMVGFYWVVSGGDVLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLIQLPKYKFQMIRNEEKPGIEAGKMVPVETSSRFLGTERILLPEDA 298          

HSP 2 Score: 108.997 bits (271), Expect = 1.986e-126
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = -1
Query:  433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588
            ECCICLS YEDG +LHALPCNHHFH+TCIVKWLKMNATCPLCK+NILKGNEQ
Sbjct:  299 ECCICLSPYEDGAELHALPCNHHFHATCIVKWLKMNATCPLCKFNILKGNEQ 350          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 23
Match NameE-valueIdentityDescription
RIE1_ARATH2.912e-10659.87E3 ubiquitin protein ligase RIE1 OS=Arabidopsis th... [more]
RING4_ARATH1.392e-6747.37E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
RING1_ARATH2.780e-6647.26E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
RING2_ARATH5.406e-6348.81E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
RNF12_MOUSE9.402e-841.82E3 ubiquitin-protein ligase RLIM OS=Mus musculus G... [more]
RNF12_HUMAN1.058e-741.82E3 ubiquitin-protein ligase RLIM OS=Homo sapiens G... [more]
ZNRF3_XENLA1.345e-746.00E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevi... [more]
RNF12_XENTR1.389e-741.82E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropi... [more]
RNG1L_ARATH1.677e-735.42E3 ubiquitin-protein ligase RING1-like OS=Arabidop... [more]
RF12B_XENLA1.885e-741.82E3 ubiquitin-protein ligase RNF12-B OS=Xenopus lae... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2NDG7_GOSRA2.049e-2599.32Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EFM2_THECC6.247e-15385.47Zinc finger, C3HC4 type (RING finger) family prote... [more]
A0A0D2Q7U9_GOSRA7.802e-13980.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R7R7_GOSRA6.359e-13880.39Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067KPP8_JATCU4.316e-13577.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9SJ31_RICCO6.111e-12875.66Cleavage and polyadenylation specificity factor, p... [more]
V4U631_9ROSI1.458e-12776.53Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0D2QS55_GOSRA6.962e-12768.51Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067F3U6_CITSI8.643e-12776.19Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9HJG7_POPTR1.986e-12673.13Zinc finger family protein OS=Populus trichocarpa ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14155:SF73SUBFAMILY NOT NAMEDcoord: 26..289
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 26..289
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..108
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..219
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 195..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 139..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..86
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 220..249
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 120..138
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 250..324
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..119
NoneNo IPR availableSIGNALP_GRAM_NEGATIVESignalP-noTMSignalP-noTMcoord: 1..25
score: 0.735
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.639
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..25
score: 0.631
NoneNo IPR availableTMHMMTMhelixcoord: 231..262
NoneNo IPR availableTMHMMTMhelixcoord: 194..216
NoneNo IPR availableTMHMMTMhelixcoord: 86..108
NoneNo IPR availableTMHMMTMhelixcoord: 118..140

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097403 ID=g.barbadense_cottongen_reftransV1_0097403; Name=g.barbadense_cottongen_reftransV1_0097403; organism=Gossypium barbadense; type=contig; length=1917bp
ATGTGATTTCAACTGAACAAAACAACCATATAGGAAATGCAATGTGAAGA
GGATATACCGTTTATGATTGGGAGGTAACATTGAATCACTGATGCAACAA
ACAAATATACAATAAGCCAGTAATCTTTCACTCTTACCAATTATAATGAA
GCAAATAAAATACTGATAACATTTGAAGCATGAAAACCATCTCTATTTTC
ATTAAAGACGGTGGAAAAACTCGCACAGGGAGGGCCCAGCCCCAGAGGAA
TCAGGTCAACCCCAAAAGGTCATTTAAACAAAAAAAAAATGAAGCTAAGA
ATGAATTACCGCATGTCGGTCTTCATAGTTCAGTTTCAGCTCTTCATAAC
TTCCGTTTTTTCTATACATACACAGCATCATCGACAACTTAATCTGACAA
TGTTCAAGGCTTGCTCTCCTGTTCTTTCATACTTGCTCATTTCCCTTCAA
AATATTGTACTTACAGAGAGGACACGTTGCATTCATCTTAAGCCATTTCA
CAATACACGTTGAATGAAAATGATGGTTGCAAGGGAGAGCATGAAGATCC
ACGCCATCTTCGTATGAGCTTAGACATATACAACATTCCTGCAAAAACAG
AAAAAGAAAACACGGGCAATTATAATAGCAAAGCAGTCATCTTAGAGAGT
CATATTTAGCAAAGCAATCACCCCAAAGGGGAGTCAGATAGAGTTGTAAC
TTACTGCATCCTCAGGTAAGAGTATGCGCTCATTTGCCAAGTATCCACTG
CTTGTTTCTATGGGGATCATTTTTCCAGCTCCCAAACTAGGCTTCTCACG
GTTGTTTATAATCTGAAATCTATATTTTGGAAGGATACTAAGATCTGCTT
CCGATGCACCTTCCTGCTCCGTAATAGCATAAAGAATTGCAATGATGCAC
GGCAAGCAGCAGAAGAGAGCAATCCCAATCAAACACGCCAAAACAACACA
AAAGATTGCAAAGAACACATCAAATGCCAGAAAAACCACAGCCAACCAGT
ACAACCGCGGGGCATTCTGCAGAAGGATATCACCACCAGAAACTACCCAA
TAGAAGCCGACTATCCACCAAAGAAATGATGCCATGGTATTCACTGTTTC
ACATCGTTTAGTTATACTTGATTCATTTGAACCAAAAAGACCGCTGTCTT
CTTCATCTTCACTATCATTAACATCCCCAGAAACTGCTTCTCCTCTCTCC
TCATCCGTAACGGATATTCTCCTACTGTTCCTTCGCCTGTATTCCAACCA
CACTAAAACAACATGAAGCAAGCACTGCAAAGCATAAGCACAGATCCATA
ATCTAATAGGAGTATTGGGCGTCTCATCCGCCGTACTTATCAACATCACT
ACCGACACCACCACGAACGCTGTATTCCACAGCATGTCCAGTGCCACAAC
GGGCTTCGAGTACCCCCAGTCGGCCCTCCGCTCCTCCAACTCACGTGCCG
CTGTCTCCCTAACCAGCATGGAAGCGCCACGCCGTCCCGTGGCTCGCCCC
AATAAATGCGCCAACGATACAGGGCGAGCAGCCGAGCCATCAGGTTGACG
CGGACGAAGGAGAGGCGCGTGAGGATCAGACGCCGCCATGGTTGCTTTGG
ATGAAGATGTGAACAAACAAACAAAAAGAAAACACCTTTTTGATTTCGGG
GTTTTCAGAAATCTGGGGAGAACTCACAAAGAGAAGAAACACATAATTGG
AGTATTAACATTAGCAAGAATAAAAACCATATTTGTTGAAAATAAGAAAA
AGAAGGGAACGTCTGGTTTGGATTAAAGAGTTTTCGGTTTAGAACGGAAC
TGCCGTCCTCACTGTCAATTAGATGCTTTTATTGATTTTTATTTTGTTTT
CTGTCGGATTCTGCTTTGCTCTATTATTTTTGTTTCCTGAAAAGATAAAA
ACAGTGTGTTATGTATG
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