g.barbadense_cottongen_reftransV1_0097403, g.barbadense_cottongen_reftransV1_0097403 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RIE1_ARATH (E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 2.912e-106 Identity = 185/309 (59.87%), Postives = 213/309 (68.93%), Query Frame = -2 Query: 705 FTSSSKATMAASDPHAPLLRPRQPDGSA------ARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613 +S S + AA D HAPLLRPR DGS ARP +LA LLGR TG R SMLVRETAAR LEERR DWGYSKPVVA D+LWN A V+ S VML+ T +E PN PIR+WIC Y LQCL HVVLVW EY RRNS R + E D N D E S S KRCE++NT+ SF+WWI+GFYWVV GGD LL AP LYWL+V+FLA DVFFA+FCVVLACL+GIAL CCLPCIIA+LYA+ EG SEA+L +LP Y+F+ ++ EK G GKM+PI + LA ER LL EDA Sbjct: 1 MSSYSSDSTAARDQHAPLLRPRH-DGSFSSSSSSARPTALAVLLGRITGHRAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHE---DYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLATERTLLAEDA 305 HSP 2 Score: 102.064 bits (253), Expect = 2.912e-106 Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -1 Query: 439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588 +CCICLSSYEDG +LHALPCNHHFHSTCIVKWLKM ATCPLCKYNILKG Sbjct: 306 DCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGT 355
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.392e-67 Identity = 144/304 (47.37%), Postives = 184/304 (60.53%), Query Frame = -2 Query: 705 TMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDE-------EDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1592 T++ + P+ R + G L H R R SMLVRETAA +LEER++DW YSKPVV LD+LWN AFV + V +LI + DE PN P+R+W+ Y +QC LH+ V +EY RR E G SG N S + ED G S+ K E+ NTM SF+WWI+GFYWV +GG L ++P+LYWL ++FL FDVFF +FCV LAC+IG+A+ CCLPCIIAILYA+ +QEGAS+ D+ +PK+RF N EK S GK I T G + ER L PEDA Sbjct: 46 TISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMRE-PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEY----RRRRRRRHPEDGGG-SGLTNSSSQQYVSLAQLEDRG----ETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLS---GKARGIMTECGTDSPIERSLSPEDA 336 HSP 2 Score: 81.2629 bits (199), Expect = 1.392e-67 Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = -1 Query: 445 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 588 ECCICL YEDGV+L LPCNHHFH TCI KWL +N+ CPLCK+NILK Sbjct: 337 ECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=1 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 2.780e-66 Identity = 138/292 (47.26%), Postives = 181/292 (61.99%), Query Frame = -2 Query: 705 AHLLGRAT-GR--RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEE-----------------RGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIIN--NREKPSLGAGKMIPIETSSGYLAN-ERILLPEDA 1511 A L RA+ GR R SMLVRE AA +LEER++DW YSKPVV LD++WN AFV V+ +L+ + E P P+R+W+ YALQC+LH+V V +EYRRRN RR + T EA+ N + G + SS+ K E+ NTM SF+WWI+GFYWV +GG L Q +PR+YWL++VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ +QEGAS+ D+ L K++F+ + N+ G I T G + E LL EDA Sbjct: 60 ARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDA 351 HSP 2 Score: 84.7297 bits (208), Expect = 2.780e-66 Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = -1 Query: 439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588 ECCICLS+YEDG +L LPC HHFH +C+ KWL +NATCPLCKYNILK + Sbjct: 352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSS 401
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2) HSP 1 Score: 184.882 bits (468), Expect = 5.406e-63 Identity = 143/293 (48.81%), Postives = 186/293 (63.48%), Query Frame = -2 Query: 705 AHLLGRAT-GR---RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVT---------------DEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSL----GAGKMIPIETSSGYLANERILLP-EDA 1511 A LL A+ GR R SMLVRE AA +LEER++DW YSKPVV LD +WN AFVVV+ +L+ ++DE PN P+R+WI Y LQC++H+V V +EYRRRNSRR DEE G +S N E + G + +S K E+ NTM SF+WW++GFYWV SGG L Q +P+LYWL +VFL FDVFF +FCV LAC+IGIA+ CCLPCIIA+LYA+ EQEGAS+ D+ L K++F+ + + K ++ G G + T G + LP EDA Sbjct: 33 ARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSR--NSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDA 323 HSP 2 Score: 80.1073 bits (196), Expect = 5.406e-63 Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = -1 Query: 439 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGN 588 ECCICLS+YED +L LPC HHFH C+ KWL +NATCPLCKYNILK + Sbjct: 324 ECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSS 373
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2) HSP 1 Score: 58.9214 bits (141), Expect = 9.402e-8 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 543 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3) HSP 1 Score: 58.9214 bits (141), Expect = 1.058e-7 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 567 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: ZNRF3_XENLA (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.345e-7 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = -1 Query: 445 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILK 594 + +C ICL Y DG +L +PC H FH C+ WL N TCP C++NI++ Sbjct: 199 ISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 248
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.389e-7 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 582 LKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGNRE 636
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.677e-7 Identity = 17/48 (35.42%), Postives = 34/48 (70.83%), Query Frame = -1 Query: 451 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNI 594 + +C +C+ +EDG D+ +PC H FH C++ WL+++ +CP+C++ + Sbjct: 213 MNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFEL 260
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.885e-7 Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = -1 Query: 433 LQECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNIL-KGNEQ 594 L+ C +C++ Y +G L LPC+H +H CI +WL N+TCP+C+ +L GN + Sbjct: 700 LKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGNRE 754
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2NDG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G157000 PE=4 SV=1) HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0 Identity = 293/295 (99.32%), Postives = 294/295 (99.66%), Query Frame = -2 Query: 705 MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1589 MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYAITEQEGASEADLSILPKY+FQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA Sbjct: 1 MAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAITEQEGASEADLSILPKYKFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 295 HSP 2 Score: 117.857 bits (294), Expect = 2.049e-25 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV Sbjct: 296 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 348
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A061EFM2_THECC (Zinc finger, C3HC4 type (RING finger) family protein isoform 1 OS=Theobroma cacao GN=TCM_011052 PE=4 SV=1) HSP 1 Score: 457.603 bits (1176), Expect = 6.247e-153 Identity = 253/296 (85.47%), Postives = 265/296 (89.53%), Query Frame = -2 Query: 705 ASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1583 ASD HAPLLRPRQPD SAARP +LA LLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFV VSV MLI T DE NTPIRLWIC YALQCL+HVVLVWLEYRRRN RR S DEERG+A SGD NDSEDE+D FGSN+SS+TKRCE+VNTM SFLWWIVGFYWVVSGG+ LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKYRFQIINN K S+GAGKM+P+ETSSGYLANERILLPEDA Sbjct: 13 ASDSHAPLLRPRQPDASAARPATLALLLGRATGRRGASMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVAVSVAMLICTVDERTNTPIRLWICGYALQCLVHVVLVWLEYRRRNVRRTSARDEERGDATSGDANDSEDEQDGIERSAFGSNQSSVTKRCESVNTMVSFLWWIVGFYWVVSGGNYLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINNGGKASVGAGKMVPVETSSGYLANERILLPEDA 308 HSP 2 Score: 113.62 bits (283), Expect = 6.247e-153 Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = -1 Query: 433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588 ECCICLSSYEDG DLHALPCNHHFHS CIVKWLKMNATCPLCKYNILKGNEQ Sbjct: 309 ECCICLSSYEDGADLHALPCNHHFHSACIVKWLKMNATCPLCKYNILKGNEQ 360
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2Q7U9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172200 PE=4 SV=1) HSP 1 Score: 410.609 bits (1054), Expect = 7.802e-139 Identity = 242/300 (80.67%), Postives = 263/300 (87.67%), Query Frame = -2 Query: 705 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1604 S T +ASDPHAPLLR RQ D SAAR +LA LLGR TGRRGASMLVRETAARELEERRADWGYSKPVVALD+LWNTAFVVVSVVMLI T +E PNTP+R+WIC YALQC +HVVLVWLEY+RRN+RR S EERGE DV DSED+EDS N+SS+TKRCE+VNT+ASF+WWIVGFYWV+SGG+ILLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKYRFQIIN EKPS+G GKM+P+ETSSGYLANERILLPEDA Sbjct: 7 SDATTTSASDPHAPLLRSRQSDASAARSSALALLLGRVTGRRGASMLVRETAARELEERRADWGYSKPVVALDILWNTAFVVVSVVMLICTVNERPNTPVRVWICGYALQCSVHVVLVWLEYKRRNARRASGRGEERGE----DVTDSEDDEDS-----NQSSVTKRCESVNTLASFIWWIVGFYWVISGGNILLQQAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINIGEKPSVGVGKMVPVETSSGYLANERILLPEDA 297 HSP 2 Score: 113.235 bits (282), Expect = 7.802e-139 Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICL SYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKG EQV Sbjct: 298 ECCICLCSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGTEQV 350
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2R7R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G172200 PE=4 SV=1) HSP 1 Score: 418.313 bits (1074), Expect = 6.359e-138 Identity = 246/306 (80.39%), Postives = 267/306 (87.25%), Query Frame = -2 Query: 687 SSKATMAASDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDAVSYNSI 1604 S T +ASDPHAPLLR RQ D SAAR +LA LLGR TGRRGASMLVRETAARELEERRADWGYSKPVVALD+LWNTAFVVVSVVMLI T +E PNTP+R+WIC YALQC +HVVLVWLEY+RRN+RR S EERGE DV DSED+EDS N+SS+TKRCE+VNT+ASF+WWIVGFYWV+SGG+ILLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKYRFQIIN EKPS+G GKM+P+ETSSGYLANERILLPEDAVSY I Sbjct: 7 SDATTTSASDPHAPLLRSRQSDASAARSSALALLLGRVTGRRGASMLVRETAARELEERRADWGYSKPVVALDILWNTAFVVVSVVMLICTVNERPNTPVRVWICGYALQCSVHVVLVWLEYKRRNARRASGRGEERGE----DVTDSEDDEDS-----NQSSVTKRCESVNTLASFIWWIVGFYWVISGGNILLQQAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQIINIGEKPSVGVGKMVPVETSSGYLANERILLPEDAVSYGII 303
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A067KPP8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04760 PE=4 SV=1) HSP 1 Score: 402.905 bits (1034), Expect = 4.316e-135 Identity = 237/306 (77.45%), Postives = 257/306 (83.99%), Query Frame = -2 Query: 705 SKATMAASDPHAPLLRPRQ--PDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSR--RISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESS---ITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1601 + A A S APLL PRQ P RP SLA LLGRATGRRG SMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVS+ MLI TADE PNTP+R+WIC YALQCL+HVVLVWLEYRRRNSR R + + + E G+V DSEDE+ S + SS +TKRCE+VNTMASFLWWIVGFYWVVSGGD+LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKYRFQ++ N EKP++GAGKM+PIETSSGYLANERILLPEDA Sbjct: 8 TSAASAESGSRAPLLLPRQEPPSSPTVRPTSLAFLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMLWNTAFVVVSITMLILTADEKPNTPVRIWICGYALQCLVHVVLVWLEYRRRNSRTGRDEMRRQRQQETEEGNV-DSEDEDSSDRGSGSFSSRSSVTKRCESVNTMASFLWWIVGFYWVVSGGDLLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQMMVNEEKPTVGAGKMVPIETSSGYLANERILLPEDA 312 HSP 2 Score: 108.612 bits (270), Expect = 4.316e-135 Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICL YEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV Sbjct: 313 ECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 365
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: B9SJ31_RICCO (Cleavage and polyadenylation specificity factor, putative OS=Ricinus communis GN=RCOM_0598050 PE=4 SV=1) HSP 1 Score: 379.407 bits (973), Expect = 6.111e-128 Identity = 230/304 (75.66%), Postives = 244/304 (80.26%), Query Frame = -2 Query: 705 HAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEER-------------GEAVSGDVNDSEDEE--DSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571 HAPLL PRQ A R SLA LLGR TGRRG SMLVRETAA ELEERRADWGYSKPVVALDM+WNTAFVVVS+ MLI + E PNTPIR+WIC YALQCL+HVVLVW+EYRRRNS V DEER E G+ DSEDE+ D SN SS+ KRCE+VNTMASFLWWIVGFYWVVSGGD LLQNAP LYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKYRFQ+ EKPS+GAGKM+PIETSSGYLANERILLPEDA Sbjct: 612 HAPLLHPRQ---EAPRAASLAMLLGRVTGRRGPSMLVRETAALELEERRADWGYSKPVVALDMVWNTAFVVVSITMLILSVKEKPNTPIRIWICGYALQCLVHVVLVWIEYRRRNS--RRVRDEERQQQQQQQAEVEGQHEENEGENVDSEDEDGVDRASVTSNRSSVIKRCESVNTMASFLWWIVGFYWVVSGGDELLQNAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFQLTVEEEKPSVGAGKMVPIETSSGYLANERILLPEDA 910 HSP 2 Score: 108.227 bits (269), Expect = 6.111e-128 Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICL YEDG +LH LPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV Sbjct: 911 ECCICLCPYEDGAELHTLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 963
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: V4U631_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015731mg PE=4 SV=1) HSP 1 Score: 371.703 bits (953), Expect = 1.458e-127 Identity = 225/294 (76.53%), Postives = 249/294 (84.69%), Query Frame = -2 Query: 705 HAPLLRPRQPDGS--AARPVSLAHLLGRATGR-RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLF--GSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571 HAPLLRPR P S AARP +LA LLGRATGR G SMLVRETAARELEERRADWGYSKPVVALD++WN+AFV+VS MLI T +E P+T IRLWIC YALQCL+HVVLVW+EYRRRN+R DE GE V NDSEDEE+ G+ S +S TKRCE++NTMASFLWWIVGFYWVVSGGD+LLQ+APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKYRF++ NN EK +GAGKM+PIET+ GY+ANERILLPEDA Sbjct: 14 HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR-RVRDDEMGGEDVRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDA 306 HSP 2 Score: 114.775 bits (286), Expect = 1.458e-127 Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICLSSYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV Sbjct: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A0D2QS55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G330000 PE=4 SV=1) HSP 1 Score: 376.326 bits (965), Expect = 6.962e-127 Identity = 211/308 (68.51%), Postives = 243/308 (78.90%), Query Frame = -2 Query: 705 FTSSSKATMAA--SDPHAPLLRPRQPDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDS---GLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1613 +++ + AT AA SDPHAPLL PR D ++ +++ GR RRG +L RE AARE EE+R D GYSK VVALDM+WN AFV +SVVML ST DE PNTPIRLW+C YAL C+LHVV V EYR N+R S DEERG+A + VNDSEDEED LFGSN+SS+ KRCE++NTM SFLW IVGFYWVVSGGDILLQNAPRLYWL VVFLAFDVFFA+ CVVLACLIGIAL CCLPCI+AILYA+ +QEGA+EADLS+L KYRFQIINN E P +GAGKM+P+E S GYLANE +LLPEDA Sbjct: 5 YSTETPATPAAAPSDPHAPLLSPRHSDAASTAQLAMP---GR---RRGGPVLAREMAAREQEEQRVDCGYSKSVVALDMMWNAAFVALSVVMLPSTMDEKPNTPIRLWVCGYALLCMLHVVFVLWEYRWSNTRTTSAVDEERGDAAAEHVNDSEDEEDGIEMSLFGSNQSSVAKRCESLNTMVSFLWCIVGFYWVVSGGDILLQNAPRLYWLVVVFLAFDVFFAVICVVLACLIGIALCCCLPCIVAILYAVAKQEGAAEADLSVLMKYRFQIINNGEMPCVGAGKMVPVEMSGGYLANEHLLLPEDA 306 HSP 2 Score: 107.842 bits (268), Expect = 6.962e-127 Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICLSSYEDGVDLH+LPCNHHFHSTCI++WLK NATCPLCKYNILKGNE + Sbjct: 307 ECCICLSSYEDGVDLHSLPCNHHFHSTCILRWLKTNATCPLCKYNILKGNEHL 359
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: A0A067F3U6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018193mg PE=4 SV=1) HSP 1 Score: 369.007 bits (946), Expect = 8.643e-127 Identity = 224/294 (76.19%), Postives = 247/294 (84.01%), Query Frame = -2 Query: 705 HAPLLRPRQPDGS--AARPVSLAHLLGRATGR-RGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLF--GSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1571 HAPLLRPR P S AARP +LA LLGRATGR G SMLVRETAARELEERRADWGYSKPVVALD++WN+AFV+VS MLI T +E P+T IRLWIC YALQCL+HVVLVW+EYRRRN+R DE GE NDSEDEE+ G+ S +S TKRCE++NTMASFLWWIVGFYWVVSGGD+LLQ APRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADLSILPKYRF++ NN EK +GAGKM+PIET+ GY+ANERILLPEDA Sbjct: 14 HAPLLRPRDPSVSPNAARPATLALLLGRATGRGHGPSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR-RVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFEVQNNDEKLGVGAGKMVPIETNGGYVANERILLPEDA 306 HSP 2 Score: 114.775 bits (286), Expect = 8.643e-127 Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -1 Query: 430 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 588 ECCICLSSYEDG +LHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV Sbjct: 307 ECCICLSSYEDGTELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 359
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Match: B9HJG7_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0008s13440g PE=4 SV=2) HSP 1 Score: 373.629 bits (958), Expect = 1.986e-126 Identity = 215/294 (73.13%), Postives = 246/294 (83.67%), Query Frame = -2 Query: 705 SDPHAPLLRPRQ--PDGSAARPVSLAHLLGRATGRRGASMLVXXXXXXXXXXXXADWGYSKPVVALDMLWNTAFVVVSVVMLISTADETPNTPIRLWICAYALQCLLHVVLVWLEYRRRNSRRISVTDEERGEAVSGDVNDSEDEEDSGLFGSNESSITKRCETVNTMASFLWWIVGFYWVVSGGDILLQNAPRLYWLXXXXXXXXXXXXXFCVVLACLIGIALFCCLPCIIAILYAITEQEGASEADLSILPKYRFQIINNREKPSLGAGKMIPIETSSGYLANERILLPEDA 1580 ++PHAPLLRPRQ P +R +L+ LLGRATGRRG SMLVRETAAREL+ERRADWGYSKPVV+LDM+WN AFVVVSV ML+ T E PNTPIR+WIC YALQCL+HVVLVWLEYRRRN+RR + ++ +V +S++E+D F S SS+TKRCE+VNTM SFLWW+VGFYWVVSGGD+LLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIAL CCLPCIIAILYA+ QEGASEADL LPKY+FQ+I N EKP + AGKM+P+ETSS +L ERILLPEDA Sbjct: 5 NEPHAPLLRPRQDPPTSPTSRQTTLSALLGRATGRRGPSMLVRETAARELDERRADWGYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRIWICGYALQCLVHVVLVWLEYRRRNTRRERDIESQQQSTEEENVPESDEEDDRASFISPRSSVTKRCESVNTMVSFLWWMVGFYWVVSGGDVLLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLIQLPKYKFQMIRNEEKPGIEAGKMVPVETSSRFLGTERILLPEDA 298 HSP 2 Score: 108.997 bits (271), Expect = 1.986e-126 Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = -1 Query: 433 ECCICLSSYEDGVDLHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 588 ECCICLS YEDG +LHALPCNHHFH+TCIVKWLKMNATCPLCK+NILKGNEQ Sbjct: 299 ECCICLSPYEDGAELHALPCNHHFHATCIVKWLKMNATCPLCKFNILKGNEQ 350 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 23
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BLAST of g.barbadense_cottongen_reftransV1_0097403 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097403 ID=g.barbadense_cottongen_reftransV1_0097403; Name=g.barbadense_cottongen_reftransV1_0097403; organism=Gossypium barbadense; type=contig; length=1917bpback to top |