g.barbadense_cottongen_reftransV1_0097369, g.barbadense_cottongen_reftransV1_0097369 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097369
Unique Nameg.barbadense_cottongen_reftransV1_0097369
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2394
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0097369 vs. ExPASy TrEMBL
Match: A0A0D2QBH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G166900 PE=4 SV=1)

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 321/336 (95.54%), Postives = 326/336 (97.02%), Query Frame = 3 
Query: 1020 MAKQASQVCGALFIVLSLLANYSISTKPSEQHAPSPDSPTFFAVPPSANIPDVETKSDETISQENVSTLYNADEPTDLQTKGEETLSDQQPPSSPSINVDPTLETNGDNNIPTSLSPPIVDKSVLDTRDMDSVSQENTSVPLLKADPPAAETKESGIIEDLFQENTSLPPSPNVDVPNVETNEEKNTLVPSSPYIDTPAFETLDDGSFTQENLSPPHSNTVSEYPEDVPQLNDYNSLPNNIVPAPSEALSYPESDTFNSAPTSNQHTILPFNYRAXXXXXXXXXXXXXXSWXXXXXXXXXXXXXXXXXXXXXXXYKKRKNDNVRAQYLSLAKKEGV 2027
            MAKQ SQVCGALFIVLSLL NYSISTKPSEQHAPSPDSPTFFAVPPSANIPDVETKS+ETISQENVSTL NADEPTDLQTKGEETLSDQQP SS SINVDPTLETNGDNNIPTSLSPPIV+ SVLDTRDMDSVSQENTSVPLLKADPPAAETKESGIIEDLFQENTSLPPSPNVDVPNVETNEEKN+LVPSSPYIDTPAFET DDGSFTQENLSPP SNTVSEYPEDVPQLNDY+SLPNNIVPAPSEALSYPESDTF+SAPTSNQHTILPFNYRAEDEPVEPYEEEEEDSWNGVNGAVAGVLVG FVIGVGGFVYKKRKNDNVRAQY SLAKKEGV
Sbjct:    1 MAKQTSQVCGALFIVLSLLTNYSISTKPSEQHAPSPDSPTFFAVPPSANIPDVETKSNETISQENVSTLSNADEPTDLQTKGEETLSDQQPASSQSINVDPTLETNGDNNIPTSLSPPIVENSVLDTRDMDSVSQENTSVPLLKADPPAAETKESGIIEDLFQENTSLPPSPNVDVPNVETNEEKNSLVPSSPYIDTPAFETSDDGSFTQENLSPPPSNTVSEYPEDVPQLNDYSSLPNNIVPAPSEALSYPESDTFSSAPTSNQHTILPFNYRAEDEPVEPYEEEEEDSWNGVNGAVAGVLVGVFVIGVGGFVYKKRKNDNVRAQYHSLAKKEGV 336
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BLAST of g.barbadense_cottongen_reftransV1_0097369 vs. ExPASy TrEMBL
Match: A0A061EZZ3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_022153 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.647e-65
Identity = 214/447 (47.87%), Postives = 249/447 (55.70%), Query Frame = 3 
Query: 1020 MAKQASQVCGALFIVLSLLANYSISTKPSEQ--------------------HAPSPDSPT-------------FFAVPPSANIPDVETKSDETISQENVSTLYNADEPTDLQTKGEETLSDQQPPSSPSINVDPTLETNGDNNIPTSLSPPIVDKSVLDTRDMDSVSQENTSVPLLKADPPAAETKESGIIEDLFQENTSLPPSPNVDVPNVETNE---------------------EKNTLVPSS--------------------PYID-TPAFETLDDGSFTQENLSP--------PHS-----------------NTVSEYPEDVPQLNDYNSLPNNIVPAPSEALSYPESD-----------TFNSAPTSNQHTILPFNYRAXXXXXXXXXXXXXXSWXXXXXXXXXXXXXXXXXXXXXXXYKKRKNDNVRAQYLSLAKKEGV 2027
            M KQAS+VC  L IV S+LAN+SIS   SEQ                      P+PDSPT             +F+ PPS+NIPDVETK +ET+SQENVS L NADEP+ L+T+GE+ L  Q   S PS++ DPTLE+N                            +ENTS+P  KADPPA ETKES   EDLFQENTSLPPSP+VD P VET E                     ++NT VPSS                     Y+D TPA +T DDGSFTQEN SP        P +                 NT S+ PE+VP+LNDY+SLP   VPAPSEA+S+PESD           TF  APTS+Q TILPFNYRA  E       E+EDSWNGVNGAVAGVLVGA VIGVGGF+Y+KRKNDN+RAQY  LAKK GV
Sbjct:    1 MPKQASKVCLFLSIVFSILANHSISATTSEQSYAPAASESENKSLSLESLPFLPNPDSPTTEAEAVAETLSPTYFSFPPSSNIPDVETKPNETLSQENVSNLSNADEPS-LETQGEQKLF-QDLASPPSVD-DPTLESN----------------------------KENTSLPPSKADPPAVETKES---EDLFQENTSLPPSPSVDTPAVETKEDENVSQENLFSAENKDNEIPSQENTSVPSSYSPNVDATSLEENKSPAVAPAYVDNTPALDTSDDGSFTQENHSPVTYVNTPAPETKGEEDITSQDYSSVTPPNTESQNPENVPELNDYSSLPKTAVPAPSEAVSFPESDPTIQMTPSNDETFGLAPTSHQ-TILPFNYRA--EDEPVEPYEDEDSWNGVNGAVAGVLVGACVIGVGGFIYQKRKNDNIRAQYTCLAKKGGV 410
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097369 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0097369 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0D2QBH0_GOSRA0.000e+095.54Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EZZ3_THECC1.647e-6547.87Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 48..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 36..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 54..323
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 344..364
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 324..343
NoneNo IPR availableTMHMMTMhelixcoord: 321..343

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097369 ID=g.barbadense_cottongen_reftransV1_0097369; Name=g.barbadense_cottongen_reftransV1_0097369; organism=Gossypium barbadense; type=contig; length=2394bp
GTTCTTCATATTAGATAAAGGCTAGTGAAATTATAATAAAAAGAATTTCT
GATTCAGTCCAAAACCATATCGGTAACAAATCAATCAATACACCACCTCT
TCTACACTCAAAAAAAAAAAAAAAAAAAAAAAAAAACGGGGCGGTTGCCA
TGGAGGATTGGATTAAGTTTTATCAATACGGTCAAGAGGCTTTTTCAGAC
CACTCAATTTGTAAATTATAATGGAGGATGTCATGCTTTTATGTATGTGG
CACTTATTTTCAATGTGCCCCATCATTATCCCTGCTTTTCTTTCCTATTT
TATGGTCTTTCTTTGTTTGGCTTGGTGTTTCTAAGTTATCTTTGAAAATT
TTATAAAAATCAAGTACTTTGTGTTGCTTTATTTACACAAGTTTAATTCA
ATTCCTATCCTTTTTTCTCTTATGAAACTTGGGTGTCCTATAAATGTGGT
AAAGTTGTCATATTTATCAATTAAAAAATGATCAGATCTAAACCAGGAAA
ATAACTGTAAAACTTGGAGCCTTTAAAGCAAATTAAGTAGACAAATCCTG
TCAATCTATGGTAATACGAGGGAGGACATTTTCAACTGTACTATCAAGTA
ATGAAGCAAGATAGTGACTCCAATTTAAACCCAATGTGCAAAGTGGCTGA
AACACGTCAAGCTTTCATAATTTGGCATGTGTTAAGGCGGAGCTTTCCTC
ATTGTCTCATGGCACCTTTCTGTCTGGGGAAATTCTCTTACAACAAGAAC
AGGTATTAATGATATTAGCATCCATTTATGGCAATGCATTTAACCCTGAA
GTTGAGGATATATTAAATGCCAATCTTTTCATGATTTCAACCAGATAATC
TATTCATTCGATGCTGAAACAATGTCACCTATGCTTCAGCATCAAACCAA
CTTGGTCTGGACCAAAGTTTATATAATGTGGTGTTCTGCAACTTGAGAAA
TTCAAGAGTTTCATTGCATATCTTGGAAAAAAAATCCTTAGAAGTTTTAC
AATTTCTAAGACCCCAACCATGGCAAAACAAGCCTCCCAAGTATGTGGTG
CCTTGTTTATAGTGCTTTCATTGTTAGCAAACTATAGTATTTCTACAAAA
CCATCTGAGCAACATGCTCCCAGTCCTGACAGTCCAACATTTTTTGCTGT
CCCGCCTAGTGCCAACATTCCCGACGTCGAAACCAAATCCGATGAAACAA
TTTCTCAAGAGAATGTTTCCACTCTTTACAATGCTGATGAACCAACTGAT
CTTCAAACCAAAGGTGAAGAGACTCTCTCTGATCAACAGCCTCCATCTTC
CCCATCAATCAATGTTGATCCTACCCTTGAAACCAATGGTGATAACAATA
TACCTACTTCTCTTTCTCCTCCCATTGTTGATAAGTCGGTCCTCGACACC
CGAGATATGGATAGTGTCTCTCAAGAGAACACATCGGTTCCTCTTTTAAA
GGCGGATCCTCCAGCTGCTGAAACCAAAGAGAGTGGTATCATTGAAGATC
TTTTCCAAGAAAACACATCTCTTCCCCCTTCTCCAAATGTCGATGTTCCT
AATGTTGAAACCAATGAAGAAAAGAATACACTGGTTCCTTCTTCTCCATA
CATTGACACCCCAGCTTTTGAAACCTTGGATGATGGAAGTTTCACTCAAG
AGAATCTGTCTCCTCCTCATTCCAACACAGTATCCGAATACCCAGAAGAT
GTACCTCAACTTAATGACTATAACTCCCTACCCAACAACATCGTTCCTGC
ACCATCCGAGGCACTTTCGTACCCCGAATCAGACACTTTCAATTCAGCTC
CAACGAGTAATCAGCATACAATCTTGCCATTCAACTACAGGGCTGAAGAT
GAGCCAGTTGAGCCTTATGAGGAGGAAGAGGAGGATTCTTGGAATGGAGT
GAATGGAGCAGTAGCAGGTGTTCTGGTTGGTGCTTTCGTTATTGGGGTGG
GAGGCTTTGTCTACAAGAAGAGAAAGAATGATAATGTTAGAGCACAATAT
CTTTCCTTGGCCAAGAAAGAAGGGGTTTGAACTTTGAATTGGAGCTATCT
ATCTATACATCACCTTCCATAATTCCAACTCTCTGAAGCTATATCACTTT
ACATTTATGTATGTTGTGTTGCAACTATATTAGAATTTGGATTGAATGGA
ACTCGAAGGATCTGTATAGGAAAAGAATGCTTTTGGAGAAGAATGCTTTC
ACTTGAATTTCTTGAAGAGTGAGTTTGGATGGGCGGTGACCTGCGGTGGA
GTGCATTGAATGTACTTTTTATATCACGCTACTTCTGTTTTTACTCTAAC
TGCAGCTAAACGCAATGTTTATCCAAATTCACCCTTAATTTAGTGGTGAT
TTATCCTTTTTATACTTAAGTACAATTGGAAAATTTTTATCGAG
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