g.barbadense_cottongen_reftransV1_0097348, g.barbadense_cottongen_reftransV1_0097348 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: RPN13_ARATH (26S proteasome regulatory subunit RPN13 OS=Arabidopsis thaliana GN=RPN13 PE=1 SV=2) HSP 1 Score: 328.946 bits (842), Expect = 1.781e-103 Identity = 165/238 (69.33%), Postives = 196/238 (82.35%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSI--GPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDE 1799 DQI+FPDEA+FEKVNQ+S RVYILKFN+DDRK FFWMQEP+AE D++LC +VN ++NQPLE +E A+ + EDM ED+ SSRAGNL V NL +E +SDVTSSSGPVKL DLQRIL+++ GP +AG+ D GL L DILKP+LIMPL+E L ++ERL+S+LPEG ED+LELLQSPPFRQQVD+FTYVLRTGQIDL+QFGIDPSKYKFTV SFLEALEDSVS S + DE Sbjct: 63 DQIVFPDEALFEKVNQSSDRVYILKFNSDDRKLFFWMQEPRAEGDAELCSSVNQYLNQPLEFPGEEGLAAAITEELEDMAEDNTSSRAGNLVVPNLSSE-VSDVTSSSGPVKLADLQRILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSHLPEGHSRAEDILELLQSPPFRQQVDAFTYVLRTGQIDLTQFGIDPSKYKFTVDSFLEALEDSVSTQSRDAMDE 299 HSP 2 Score: 67.3958 bits (163), Expect = 1.100e-10 Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 Query: 136 SFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 S EAFP MQE +LEFRAGKM L+G RVVPD RKGL+RIAR Sbjct: 2 SSSEAFPVMQEIMLEFRAGKMSLQGTRVVPDARKGLVRIAR 42
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_DANRE (Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.304e-13 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++VNQ + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 71 DLIIFPDDCEFKRVNQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDDEYCRKVNEYLNNP 130 HSP 2 Score: 65.855 bits (159), Expect = 6.841e-10 Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 3 Query: 1407 SSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKY-----KFTVLSFLEALEDS 1766 SS+ P++L DLQ IL+++ V P G G+D +L PD++ P++ +++RL YLP G+ P E++ L SP F+Q + F+ L +GQ+ ++QFG+ PS+ K V +F +A+E S Sbjct: 261 SSTQPIQLSDLQSILATM---NVPAMPTEGSGVDLASVLTPDVMAPILANPEVQQRLLPYLPSGESLPQSAEEIQNTLTSPQFQQAMSMFSSALASGQLGPLMNQFGL-PSEAVDAANKGDVEAFAKAMEGS 388
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_XENTR (Proteasomal ubiquitin receptor ADRM1 OS=Xenopus tropicalis GN=adrm1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 5.521e-13 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V+Q + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKVNEYLNNP 130 HSP 2 Score: 64.6994 bits (156), Expect = 1.423e-9 Identity = 45/144 (31.25%), Postives = 75/144 (52.08%), Query Frame = 3 Query: 1371 TNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787 +N GA A TS + P++L DLQ IL+++ GE + L +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ +SQFG+ +EA ++ TS + Sbjct: 247 SNDGASA---ATSPTQPIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLMPYLPSGESLPQTADEIQNTLTSPQFQQALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQTTSSQ 386
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADM1B_XENLA (Proteasomal ubiquitin receptor ADRM1-B OS=Xenopus laevis GN=adrm1-b PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.899e-13 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V+Q + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNP 130 HSP 2 Score: 62.003 bits (149), Expect = 1.124e-8 Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 3 Query: 1371 TNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787 +N GA A TS + ++L DLQ IL+++ GE + L +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ +SQFG+ +EA ++ TS + Sbjct: 247 SNDGASA---ATSPTQAIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLMPYLPSGESLPQTADEIQNTLTSPQFQQALSMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTSSQ 386
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_CHICK (Proteasomal ubiquitin receptor ADRM1 OS=Gallus gallus GN=ADRM1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.139e-12 Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379 D IIFPD+ F++V Q + GRVY+LKF ++ FFWMQEPK + D + C VN ++N P G +AS + E + S GN++ L Sbjct: 72 DLIIFPDDCEFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEHCRKVNEYLNNPPMPGALGGNASGGHELSALGGEGGLQSLLGNMSHNQL 168 HSP 2 Score: 68.1662 bits (165), Expect = 1.427e-10 Identity = 45/141 (31.91%), Postives = 81/141 (57.45%), Query Frame = 3 Query: 1419 PVKLKDLQRILSSIG-PAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805 P++L DLQ IL+++ P+ G+ + L +L P+++ P++ ++ERL YLP G+ P E++ L SP F+Q + F+ L +GQ +SQFG+ + K V +F +A+++SV + G+++D+KD Sbjct: 261 PIQLSDLQNILATMNVPSGAGGQQ---VDLATVLTPEIMAPILANAEVQERLMPYLPSGESLPQTAEEIQNTLTSPQFQQALSMFSAALASGQHGPLMSQFGLPAEAIDAANKGDVEAFAKAMQNSVKSDQKEGDSKDKKD 398
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_HUMAN (Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.166e-12 Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN ++N P G S + E + S GN++ + L Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSALGGEGGLQSLLGNMSHSQL 168 HSP 2 Score: 68.5514 bits (166), Expect = 9.230e-11 Identity = 47/150 (31.33%), Postives = 83/150 (55.33%), Query Frame = 3 Query: 1395 SDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805 S S + P++L DLQ IL+++ V P GG +D +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A++++ + G+T+D+KD Sbjct: 253 STAASPTQPIQLSDLQSILATM---NVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKPEQKEGDTKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_BOVIN (Proteasomal ubiquitin receptor ADRM1 OS=Bos taurus GN=ADRM1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.176e-12 Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN ++N P Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNP 131 HSP 2 Score: 70.0922 bits (170), Expect = 3.476e-11 Identity = 48/154 (31.17%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVS--KTSGETQDEKD 1805 + S S + P++L DLQ IL+++ V P GG +D +L P+++ P++ ++ERL YLP G+ P E++ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A+++S S + G+ +D+KD Sbjct: 249 GDGASTAASPAQPIQLSDLQSILATM---SVPAGPGGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNSASPEQQEGDGKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADM1A_XENLA (Proteasomal ubiquitin receptor ADRM1-A OS=Xenopus laevis GN=adrm1-a PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 1.496e-12 Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQAS-GRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V+Q + GRVY+LKF ++ FFWMQEPK + D + C +N ++N P Sbjct: 71 DLIIFPDDCEFKRVSQCTTGRVYVLKFKAGSKRLFFWMQEPKTDKDEEYCRKLNEYLNNP 130 HSP 2 Score: 66.2402 bits (160), Expect = 5.013e-10 Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 3 Query: 1386 EAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDPSKYKFTVLSFLEALEDSVSKTSGE 1787 + S+ TS + P++L DLQ IL+++ GE + L +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ +SQFG+ +EA ++ TS + Sbjct: 249 DGASEATSPTQPIQLSDLQNILATMN-VPATGEGGQQVDLASVLTPEIMAPILANAEVQERLTPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMSQFGLPADAVDAANKGDIEAFAKAMQSTSSQ 386
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_RAT (Proteasomal ubiquitin receptor ADRM1 OS=Rattus norvegicus GN=Adrm1 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 3.011e-12 Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNL 1379 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN +N P G S + E + S GN++ + L Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGTLGASGSSGHELSALGGEGGLQSLLGNMSHSQL 168 HSP 2 Score: 66.2402 bits (160), Expect = 4.522e-10 Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTP---EDLLELLQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVSK--TSGETQDEKD 1805 S S + P++L DLQ IL+++ V P G +D +L P+++ P++ ++ERL YLP G+ P E++ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A++++ G+T+D+KD Sbjct: 249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKSDPKEGDTKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Match: ADRM1_MOUSE (Proteasomal ubiquitin receptor ADRM1 OS=Mus musculus GN=Adrm1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 5.032e-12 Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQA-SGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQP 1268 D IIFPD+ F++V Q SGRVY+LKF ++ FFWMQEPK + D + C VN +N P Sbjct: 72 DLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNP 131 HSP 2 Score: 65.4698 bits (158), Expect = 1.031e-9 Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 1383 AEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLD--DILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLEL---LQSPPFRQQVDSFTYVLRTGQID--LSQFGIDP----SKYKFTVLSFLEALEDSVSK--TSGETQDEKD 1805 S S + P++L DLQ IL+++ V P G +D +L P+++ P++ ++ERL YLP G+ P+ E+ L SP F+Q + F+ L +GQ+ + QFG+ + K V +F +A++++ G+T+D+KD Sbjct: 249 GNGTSTAASPTQPIQLSDLQSILATM---NVPAGPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNNAKSDPKEGDTKDKKD 399
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QQH4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 505.368 bits (1300), Expect = 1.973e-169 Identity = 250/254 (98.43%), Postives = 252/254 (99.21%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 54 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 307 HSP 2 Score: 68.9366 bits (167), Expect = 2.991e-9 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 Query: 160 MQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 33
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QXS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 505.368 bits (1300), Expect = 2.960e-169 Identity = 250/254 (98.43%), Postives = 252/254 (99.21%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 318 HSP 2 Score: 91.6633 bits (226), Expect = 1.117e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2MSH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 501.13 bits (1289), Expect = 9.385e-168 Identity = 248/252 (98.41%), Postives = 250/252 (99.21%), Query Frame = 3 Query: 1098 IIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 IIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 65 IIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 316 HSP 2 Score: 91.6633 bits (226), Expect = 1.196e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2RS48_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 499.204 bits (1284), Expect = 7.226e-167 Identity = 250/259 (96.53%), Postives = 252/259 (97.30%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPE-----GQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPE GQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPELLVFQGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 323 HSP 2 Score: 91.6633 bits (226), Expect = 1.281e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2P5J7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 491.886 bits (1265), Expect = 3.606e-164 Identity = 246/254 (96.85%), Postives = 248/254 (97.64%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPL DE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPL----DETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 314 HSP 2 Score: 92.0485 bits (227), Expect = 9.892e-17 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QQI1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 488.034 bits (1255), Expect = 1.131e-162 Identity = 245/254 (96.46%), Postives = 247/254 (97.24%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVA GLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVA-----GLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 313 HSP 2 Score: 92.0485 bits (227), Expect = 1.010e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0B0N9P8_GOSAR (Proteasomal ubiquitin receptor ADRM1 OS=Gossypium arboreum GN=F383_08425 PE=4 SV=1) HSP 1 Score: 479.945 bits (1234), Expect = 1.778e-159 Identity = 243/254 (95.67%), Postives = 246/254 (96.85%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKL+DLQRILS+IGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQ VLRTGQIDLSQFGIDP+ KFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 65 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLEDLQRILSNIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQ------VLRTGQIDLSQFGIDPN--KFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 310 HSP 2 Score: 91.6633 bits (226), Expect = 1.305e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A061GS42_THECC (Regulatory particle non-ATPase 13 OS=Theobroma cacao GN=TCM_039785 PE=4 SV=1) HSP 1 Score: 462.996 bits (1190), Expect = 3.878e-152 Identity = 236/258 (91.47%), Postives = 244/258 (94.57%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLE-LGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKT--SGET-QDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLC +VNN INQPLE LG +EPDAS PLQ EDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAE+AG+PDGGL L DILKPDLIMPLIETL LEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSK SG+T QD+KD+RPQSCNRNDPMDESK Sbjct: 106 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCSSVNNIINQPLEFLGDEEPDASAPLQVSEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEIAGDPDGGLELGDILKPDLIMPLIETLPLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKMSESGDTWQDDKDLRPQSCNRNDPMDESK 363 HSP 2 Score: 83.1889 bits (204), Expect = 9.908e-14 Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSS EAFPAMQETLLEFRAGKM+LEGKRVVPDTRKGLIRI R Sbjct: 1 MGSSSTEAFPAMQETLLEFRAGKMLLEGKRVVPDTRKGLIRITR 44
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A097PT04_GOSRA (Regulatory particle non-ATPase 13 (Fragment) OS=Gossypium raimondii PE=2 SV=1) HSP 1 Score: 454.521 bits (1168), Expect = 5.249e-150 Identity = 229/236 (97.03%), Postives = 231/236 (97.88%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDE 1799 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS QDE Sbjct: 60 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTS---QDE 292 HSP 2 Score: 81.6481 bits (200), Expect = 1.855e-13 Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 Query: 142 GEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 GEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 GEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 39
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Match: A0A0D2QXT0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G024500 PE=4 SV=1) HSP 1 Score: 436.032 bits (1120), Expect = 9.831e-143 Identity = 225/254 (88.58%), Postives = 227/254 (89.37%), Query Frame = 3 Query: 1092 DQIIFPDEAVFEKVNQASGRVYILKFNTDDRKFFFWMQEPKAEDDSQLCCAVNNFINQPLELGVDEPDASEPLQAFEDMVEDDISSRAGNLTVTNLGAEAISDVTSSSGPVKLKDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 1853 DQIIFPDEAVFEK EPKAEDDSQLCCAVNNFINQPLELGVDE DASEPLQA EDMVEDDISSRAGNLT+TNLGAEAISDVTSSSGPVKL+DLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK Sbjct: 65 DQIIFPDEAVFEK-------------------------EPKAEDDSQLCCAVNNFINQPLELGVDETDASEPLQASEDMVEDDISSRAGNLTLTNLGAEAISDVTSSSGPVKLEDLQRILSSIGPAEVAGEPDGGLGLDDILKPDLIMPLIETLSLEERLASYLPEGQWTPEDLLELLQSPPFRQQVDSFTYVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKTSGETQDEKDVRPQSCNRNDPMDESK 293 HSP 2 Score: 91.6633 bits (226), Expect = 9.205e-17 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 127 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 258 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR Sbjct: 1 MGSSFGEAFPAMQETLLEFRAGKMMLEGKRVVPDTRKGLIRIAR 44 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 13
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BLAST of g.barbadense_cottongen_reftransV1_0097348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097348 ID=g.barbadense_cottongen_reftransV1_0097348; Name=g.barbadense_cottongen_reftransV1_0097348; organism=Gossypium barbadense; type=contig; length=2544bpback to top |