g.barbadense_cottongen_reftransV1_0097261, g.barbadense_cottongen_reftransV1_0097261 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097261
Unique Name	g.barbadense_cottongen_reftransV1_0097261
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At02	chromosome	g.barbadense_cottongen_reftransV1_0097261:1..2454 . At02:9764983..9768881 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.445e-68
Identity = 111/134 (82.84%), Postives = 125/134 (93.28%), Query Frame = -3

Query: 1691 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVS-EPTADENVKMASC 2089
             + L M+PQLEQIHGEIRD FRAL+NGFQRLDK+KDS RQSKQLEELT KMRECKRL+KEFDRE+KDEE++N PEVNKQLNDEKQSMIKELNSYVA+RKTYM+TLGNKK+ELFDMGAGVS EPTA+ENV++AS 
Sbjct:    2 ASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASS 135

HSP 2 Score: 224.942 bits (572), Expect = 2.093e-65
Identity = 116/133 (87.22%), Postives = 125/133 (93.98%), Query Frame = -3

Query:  854 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1252
             ++MSNQELVD GMK MDETDQAIERSK+VVEQT+EVGTQTA  LKGQTDQMGR+VN LDTIQFSIKKASQLVKEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNPNNKDIRDIPGLAPPA SR+LLYLR+
Sbjct:  133 ASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYLRN 265

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.656e-66
Identity = 107/133 (80.45%), Postives = 123/133 (92.48%), Query Frame = -3

Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVS-EPTADENVKMAS 2089
             +EL M+P LEQIHGEIRD FRAL+NGFQRLDK+KDS+RQSKQLEEL  KMR+CKRL+KEFDRE+KD E++N P+VNKQLNDEKQSMIKELNSYVA+RKTY+NTLGNKK+ELFD GAGVS EPTA+ENV+MAS
Sbjct:    2 ASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVSGEPTAEENVQMAS 134

HSP 2 Score: 221.476 bits (563), Expect = 3.980e-64
Identity = 114/133 (85.71%), Postives = 123/133 (92.48%), Query Frame = -3

Query:  854 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1252
             + MSNQELVD GMK MDETDQAIERSK+VV QT+EVGTQTA  LKGQTDQMGR+VN+LDTIQFS+KKASQLVKEIGRQVATDKCIM FLFLIVCGVIAII+VKIVNPNNKDIRDIPGLAPPA SR+LLY R+
Sbjct:  133 ASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYFRE 265

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.073e-48
Identity = 98/134 (73.13%), Postives = 114/134 (85.07%), Query Frame = -3

Query:  863 MTCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIP--GLAPPAPSRRLLY 1258
            +  + MSNQEL+D G   MD+TDQAIER KK+V++TI VGT T+  LK QT+QM R+VNELD+I FS+KKAS+LVKEIGRQVATDKCIM FLFLIV GVIAII+VKIVNPNNKDIRDIP  GLAPPA +RRLL+
Sbjct:  129 LLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGVGLAPPAMNRRLLW 262

HSP 2 Score: 149.828 bits (377), Expect = 1.147e-38
Identity = 75/126 (59.52%), Postives = 97/126 (76.98%), Query Frame = -3

Query: 1694 QLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLG--NKKIELFDMGAGVSEPTADENVKMAS 2065
            +L +I G+I D+FRALSNGFQ+L+K+KD+NRQS+QLEELT KMR+CK LIK+FDREIK  ES N    N+ LND +QSM+KELNSYVA++K Y + L   NK+++LFD   G  E   +ENV +AS
Sbjct:   10 ELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEHMEENVLLAS 132

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: PT148_ARATH (Probable sugar phosphate/phosphate translocator At1g48230 OS=Arabidopsis thaliana GN=At1g48230 PE=2 SV=2)

HSP 1 Score: 44.669 bits (104), Expect = 1.418e-10
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 1

Query:  181 LEKPRIAVPYIQSNYRIFFSISLSALGSE------LGRTGAVTFRVAG 306
            LEKP I V  IQ N+ IFFS +L AL         +GRTGAVT RVAG
Sbjct:  214 LEKPNIDVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAG 261

HSP 2 Score: 44.2838 bits (103), Expect = 1.418e-10
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  305 AGVLKDWLPIALSSVVFSESTITGPNI 385
            AGVLKDW+ IALS+V+F ESTITG NI
Sbjct:  260 AGVLKDWILIALSTVIFPESTITGLNI 286

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: PT317_ARATH (Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 2.993e-10
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  305 AGVLKDWLPIALSSVVFSESTITGPNI 385
            AGVLKDW+ IALS+V+F ESTITG NI
Sbjct:  260 AGVLKDWILIALSTVIFPESTITGLNI 286

HSP 2 Score: 43.8986 bits (102), Expect = 2.993e-10
Identity = 28/56 (50.00%), Postives = 32/56 (57.14%), Query Frame = 1

Query:  157 WYFFLCLQLEKPRIAVPYIQSNYRIFFSISLSALGSE------LGRTGAVTFRVAG 306
            WY      LEKP + V  IQ N+ IFFS +L AL         +GRTGAVT RVAG
Sbjct:  211 WYV-----LEKPTMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAG 261

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0D2SC60_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G071800 PE=4 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.231e-83
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = -3

Query: 1691 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASC 2095
            MATTELQM+PQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 
Sbjct:    1 MATTELQMSPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASS 135

HSP 2 Score: 94.7449 bits (234), Expect = 2.376e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = -3

Query: 1109 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQ 1252
             ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQ
Sbjct:  133 ASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQ 180

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0B0N3A2_GOSAR (Putative plant SNARE 13-like protein OS=Gossypium arboreum GN=F383_07451 PE=4 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.767e-83
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = -3

Query:  848 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1252
             ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKD+RDIPGLAPPAPSRRLLYLRDPQ
Sbjct:  133 ASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDVRDIPGLAPPAPSRRLLYLRDPQ 267

HSP 2 Score: 274.248 bits (700), Expect = 1.162e-81
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            MATTELQM+PQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS
Sbjct:    1 MATTELQMSPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 134

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0D2PNZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G071800 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.149e-82
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = -3

Query:  848 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1252
             ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLR PQ
Sbjct:  133 ASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRSPQ 267

HSP 2 Score: 274.633 bits (701), Expect = 1.016e-81
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            MATTELQM+PQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS
Sbjct:    1 MATTELQMSPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 134

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0D2RGT6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G071800 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.398e-82
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            MATTELQM+PQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS
Sbjct:    1 MATTELQMSPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 134

HSP 2 Score: 209.92 bits (533), Expect = 2.070e-58
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = -3

Query:  938 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKI 1252
             ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVK+
Sbjct:  133 ASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 237

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0D2PP00_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G071800 PE=4 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 6.110e-82
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = -3

Query:  848 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1252
             ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQV TDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLR PQ
Sbjct:  133 ASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVTTDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRSPQ 267

HSP 2 Score: 274.248 bits (700), Expect = 1.092e-81
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            MATTELQM+PQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS
Sbjct:    1 MATTELQMSPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 134

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0D2RAI7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G071800 PE=4 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.252e-81
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = -3

Query:  848 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1252
             ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLR PQ
Sbjct:   45 ASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRSPQ 179

HSP 2 Score: 97.8265 bits (242), Expect = 1.981e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -3

Query: 1694 MIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 1831
            MIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS
Sbjct:    1 MIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 46

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0D2N8T4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G071800 PE=4 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 9.791e-81
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = -3

Query:  848 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1252
             ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLR PQ
Sbjct:  119 ASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRSPQ 253

HSP 2 Score: 224.942 bits (572), Expect = 1.113e-63
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = -3

Query: 1691 LFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASC 2032
            LFR   NGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 
Sbjct:   10 LFRI--NGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASS 121

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A061EPC7_THECC (Plant snare 13 isoform 1 OS=Theobroma cacao GN=TCM_021488 PE=4 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 3.809e-76
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            MATTELQM+PQLEQIHGEIRD  RAL+NGFQRLDK+KDSNRQSKQLEELT KMRECKRLIKEFDREIKDEES+NPPEVNKQLNDEKQSMIKELNSYVA+RKTYMNTLGNKKIELFDMGAGVSEPTADENVK+AS
Sbjct:    1 MATTELQMSPQLEQIHGEIRDNVRALANGFQRLDKIKDSNRQSKQLEELTAKMRECKRLIKEFDREIKDEESRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNTLGNKKIELFDMGAGVSEPTADENVKVAS 134

HSP 2 Score: 242.662 bits (618), Expect = 6.743e-70
Identity = 126/136 (92.65%), Postives = 132/136 (97.06%), Query Frame = -3

Query:  848 TCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1255
              ++MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTA TLKGQ++QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNP+NKDIRDIPGLAPPAPSRRLLYLR+ Q
Sbjct:  132 VASSMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAVTLKGQSEQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPSNKDIRDIPGLAPPAPSRRLLYLRESQ 267

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A067JYW5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19083 PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.465e-73
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = -3

Query: 1691 TELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASC 2086
            T+LQM+PQLEQIHGEI+D FRALSNGFQRLDK+KDSNRQSKQLE+LTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVA+RKTYMNTLGNK++ELFDMGAG SEPTA+ENV+MAS 
Sbjct:    3 TQLQMSPQLEQIHGEIKDNFRALSNGFQRLDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNTLGNKRVELFDMGAGGSEPTAEENVQMASA 134

HSP 2 Score: 242.662 bits (618), Expect = 6.605e-70
Identity = 130/141 (92.20%), Postives = 133/141 (94.33%), Query Frame = -3

Query:  830 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ*KGDHF 1252
             +AMSNQELVD GMKTMDETDQ IERSKKVVEQTIEVGTQTA TLKGQT+QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDP+    HF
Sbjct:  132 ASAMSNQELVDAGMKTMDETDQVIERSKKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPE----HF 268

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A067GA13_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022587mg PE=4 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.514e-71
Identity = 116/132 (87.88%), Postives = 129/132 (97.73%), Query Frame = -3

Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2089
             T+LQM+PQLEQIHGEIRD FRALSNGFQ+LDK+KDSNRQ+KQLEELTG+MRECKRLIKE DREIKDEE++NPPEVNKQLNDEKQSMIKELNSYVA+RKTYMN+LGNKK+ELFDMGAGVSEPTADENV++AS
Sbjct:    2 ATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVAS 133

HSP 2 Score: 229.565 bits (584), Expect = 3.618e-65
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = -3

Query:  830 TCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ*KGDHF 1255
              ++MSNQEL+D G KTMDETDQAI+RS+ VVEQTIEVGTQTA TLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVK+VNPNNKDIRDIPGLAPPAP+RRLL L+ P+    HF
Sbjct:  131 VASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSLQAPE----HF 268

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
NPS13_ARATH	2.445e-68	82.84	Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP...	[more]
NPS12_ARATH	5.656e-66	80.45	Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NP...	[more]
NPS11_ARATH	1.073e-48	73.13	Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NP...	[more]
PT148_ARATH	1.418e-10	56.25	Probable sugar phosphate/phosphate translocator At...	[more]
PT317_ARATH	2.993e-10	77.78	Probable sugar phosphate/phosphate translocator At...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2SC60_GOSRA	2.231e-83	98.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0N3A2_GOSAR	2.767e-83	97.04	Putative plant SNARE 13-like protein OS=Gossypium ...	[more]
A0A0D2PNZ4_GOSRA	1.149e-82	97.04	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RGT6_GOSRA	1.398e-82	99.25	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PP00_GOSRA	6.110e-82	96.30	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RAI7_GOSRA	1.252e-81	97.04	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2N8T4_GOSRA	9.791e-81	97.04	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061EPC7_THECC	3.809e-76	93.28	Plant snare 13 isoform 1 OS=Theobroma cacao GN=TCM...	[more]
A0A067JYW5_JATCU	1.465e-73	90.15	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
A0A067GA13_CITSI	1.514e-71	87.88	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 22..89 e-value: 1.8E-6 score: 37.5
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 27..89 score: 9.707
None	No IPR available	GENE3D	1.20.5.110		coord: 18..90 e-value: 1.3E-17 score: 62.9
None	No IPR available	PANTHER	PTHR21230:SF27	NOVEL PLANT SNARE 11	coord: 17..135
None	No IPR available	PANTHER	PTHR21230	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	coord: 17..135
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..98
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 120..148
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 99..119
None	No IPR available	SUPERFAMILY	58038	SNARE fusion complex	coord: 17..90
None	No IPR available	TMHMM	TMhelix		coord: 99..116
IPR005606	Sec20	PFAM	PF03908	Sec20	coord: 35..113 e-value: 5.4E-7 score: 29.3

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097261 ID=g.barbadense_cottongen_reftransV1_0097261; Name=g.barbadense_cottongen_reftransV1_0097261; organism=Gossypium barbadense; type=contig; length=2454bp
CTTTTTGAAACATGAAAAAAAGATTTAAAAAAAATAAAAACACAAATGCC
CAACTCGCTGGCAAAATTTAATGTACGTAGATCTTATTATATTATATATT
AAGTGCAATATACCGGTGGCTGAAGGGTCAATGTTTGATCTCCCCTTTTT
GCAGTCTGGTACTTCTTTTTGTGCCTTCAGCTGGAGAAGCCTAGGATTGC
AGTTCCATATATACAATCGAATTACCGAATCTTTTTCTCCATTTCTCTTT
CTGCATTGGGCTCTGAACTTGGAAGAACTGGAGCTGTCACCTTCAGGGTC
GCTGGCTGGCGTTCTAAAGGACTGGTTACCGATTGCCCTTTCCTCTGTTG
TTTTTTCGGAGTCTACAATAACTGGGCCCAATATTTGTCATTCACAAATG
GTCACAGCAAGTATGTATTATGATGTGTTCATTAAGTTGGCAGCTGAGCA
CTAGTTTTATGATAAGCTCCAGTTCTGGTTCTAGGCTAACCCGGTCCAGA
TACCTATTTTTGGTTGAGATGAGCTTGGCCACAAAATTCATACATGTATA
TCCCCCAAGGACATTTGAAAATTATATGGAATTCACTTCAGAGATGACTT
ATTTCTAACCCTACAATAATCTTCAAAGTTCATTCAAATAATTCAACTGC
TCCCATAAAATTTACAAAGACAACAAACACCACCAACCGTATATGCACAT
CTCAGGCAAGAATCAATCATATAAAATCGAAAAGCGAAAAACCATCACAT
CCCTCAAATGCCAACTTCCCAATACTCCCCACTCCTGTCTCTATTCAAGC
ATAAGCAGAACAAAACCACTCACTTATTTGAAATGATCACCTTTTTACTG
CGGGTCCCTTAGATATAACAATCTCCTCGAAGGTGCTGGAGGTGCCAATC
CTGGAATATCTCTGATATCTTTGTTGTTCGGATTCACAATCTTCACAACT
ATGATGGCTATAACACCGCATACGATAAGAAAAAGAAATAGCATGATGCA
TTTATCAGTGGCTACCTGCCTACCAATCTCCTTCACCAGCTGGGAGGCCT
TCTTAATTGAAAACTGAATTGTATCCAGCTCATTTACAATACGGCCCATT
TGATCAGTTTGTCCTTTTAGAGTACCAGCAGTTTGAGTTCCTACTTCAAT
TGTTTGTTCAACAACCTTTTTTGAGCGTTCAATGGCCTGATCAGTCTCAT
CCATTGTCTTCATCCCATGATCAACAAGCTCTTGGTTTGACATTGCTGTG
CAAGTCATGCAATAGTAAGATAGTTTGATGAAAAAGTACAGTTAACCTCT
ACGCCGAGATTCTGTTGTTTTAAGTTCATAACTTTCAGTAAAGATAATGG
ACTAGATCAATTTTCTTGTAGCATCCAAAGTCGAGAATGCTTAGCCTTGT
TCCCAAACTGTCCAACATTCAAAGAAGACTTCACATCCCAGTTTTCTAGG
CAGTAGTTGATTGAAAATGCATATAGCATGACAATATATAAAATCAACTA
AATCGGCAAAATCATAATTGATACAAGATACTTTGGTATTAGAATGTATT
TAAATACATCAAATTAAAAGAAAAAACCAATGGCAGGTAATGAAAGCATA
CCCATCATTTTCAGAACTAAGAGTCTTTGATCCAAAGTAAATGTTCTATA
TAAATCAAACTCAATGGAGGGTTAGAAGAAGTAAGATCTTACATGATGCC
ATTTTAACATTTTCATCAGCTGTAGGTTCACTGACTCCAGCTCCCATATC
AAAGAGTTCAATTTTCTTGTTACCAAGGGTATTCATGTATGTTTTCCTCA
TAGCTACATACGAATTCAGTTCTTTGATCATAGACTGCTTCTCATCATTG
AGTTGCTTGTTCACTTCGGGAGGATTTTTGCTTTCCTCATCTTTAATTTC
ACGATCAAACTCCTTGATTAATCTTTTACATTCCCTCATCTTGCCAGTAA
GCTCTTCCAGCTGTTTGCTTTGCCTATTGGAATCTTTCATCTTATCCAGT
CTCTGGAAGCCATTTGAAAGAGCACGGAAAAGATCGCGGATTTCGCCATG
GATCTGCTCCAACTGAGGATTCATCTGCAACTCCGTGGTGGCCATCTAAT
CCGCCGATTGAAGATTTTCAATTTCCCAAAAGTATTTCAGTTCTCATTCA
AAACCCCCCATAGTACAAAATTCATAAAAAAAAAAAAACATAAACACTCA
CTCCCACGCTGGGAATTTTTTTTTATTTTTTTCCCAAAATTTTCTCTATT
TTTAGAAAAAAAAAAGGGGAGAAATTTGGAAAAATGAAATTGAAAATTGA
AGGGTTCTAGAGAGAGAGAGAGAAAACAAAAGTTAGGAGAAAAGCAACAA
AGTGTGGAATGGAATTAAACTGTAACACAGAGAGAGATAACAAGAGAATC
GCTGTCTCTGTGTGTCTTTTATTATTTTATTGTTATTAGATGATTTTTAT
TTTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000727	T_SNARE_dom
IPR005606	Sec20

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.barbadense_cottongen_reftransV1_0097261, g.barbadense_cottongen_reftransV1_0097261 (contig) Gossypium barbadense

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