g.barbadense_cottongen_reftransV1_0096983, g.barbadense_cottongen_reftransV1_0096983 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0096983
Unique Name	g.barbadense_cottongen_reftransV1_0096983
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	1996

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt05	chromosome	g.barbadense_cottongen_reftransV1_0096983:1..1996 . Dt05:1575934..1578511 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A0D2UER4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_009G018600 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.527e-58
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3

Query: 1530 GFVFFLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1796
             F+ F   REMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA
Sbjct:   42 SFILFNPHREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 130

HSP 2 Score: 81.6481 bits (200), Expect = 1.527e-58
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = -2

Query: 1861 KTEYRKAISSQTQSLRETMLRQLFAKSTAKYATFSFIQFNPH 1986
            KTEYR+AISSQTQSLRETMLRQLFAKSTAK+ATFSFI FNPH
Sbjct:    8 KTEYREAISSQTQSLRETMLRQLFAKSTAKHATFSFILFNPH 49

HSP 3 Score: 120.939 bits (302), Expect = 2.552e-27
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = -2

Query:  847 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEK 1017
            +NDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEK
Sbjct:  158 ENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEK 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A061GPD9_THECC (Binding, putative isoform 2 OS=Theobroma cacao GN=TCM_038052 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.780e-50
Identity = 83/88 (94.32%), Postives = 83/88 (94.32%), Query Frame = -3

Query: 1530 FVFFLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1793
            FV F   REMHSRNKKAMELIAKGWSALKEVDRVIDYCE NDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA
Sbjct:   49 FVQFNPHREMHSRNKKAMELIAKGWSALKEVDRVIDYCERNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 136

HSP 2 Score: 53.5286 bits (127), Expect = 8.780e-50
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = -2

Query: 1861 ISSQTQSLRETMLRQLFAKSTAKYATFSFIQFNPH 1965
            +SS TQSL   MLR LFAKST K+A  SF+QFNPH
Sbjct:   21 LSSPTQSLEVKMLRPLFAKSTGKHAILSFVQFNPH 55

HSP 3 Score: 95.1301 bits (235), Expect = 3.344e-18
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = -2

Query:  340 LGAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKWXXXXXXXXXXXXXXSNSTDGVSQSNTALL 594
            +  QVPECLTK SSKRGSAAKR  KNV+  + +P EMAKEQF++AA AGCDL LKWLQRLEE E+RLL ES+STD VSQ+  A L
Sbjct:  163 IEVQVPECLTKLSSKRGSAAKRARKNVESLSSDPAEMAKEQFQVAAQAGCDLGLKWLQRLEEEEKRLLRESSSTDNVSQAKPAFL 247

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A061GNC7_THECC (Binding isoform 1 OS=Theobroma cacao GN=TCM_038052 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.015e-49
Identity = 83/88 (94.32%), Postives = 83/88 (94.32%), Query Frame = -3

Query: 1530 FVFFLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1793
            FV F   REMHSRNKKAMELIAKGWSALKEVDRVIDYCE NDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA
Sbjct:   49 FVQFNPHREMHSRNKKAMELIAKGWSALKEVDRVIDYCERNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 136

HSP 2 Score: 54.299 bits (129), Expect = 1.015e-49
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = -2

Query: 1861 KTEYRKAISSQTQSLRETMLRQLFAKSTAKYATFSFIQFNPH 1986
            + E    +SS TQSL   MLR LFAKST K+A  SF+QFNPH
Sbjct:   14 RQELPYPLSSPTQSLEVKMLRPLFAKSTGKHAILSFVQFNPH 55

HSP 3 Score: 150.984 bits (380), Expect = 4.280e-37
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +NDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDI+SALWCFHRASEKGHAGAAIAYG+LLLRG
Sbjct:  164 ENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGTLLLRG 236

HSP 4 Score: 97.0561 bits (240), Expect = 1.310e-18
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = -2

Query:  340 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKWXXXXXXXXXXXXXXSNSTDGVSQSNTALL 591
            G QVPECLTK SSKRGSAAKR  KNV+  + +P EMAKEQF++AA AGCDL LKWLQRLEE E+RLL ES+STD VSQ+  A L
Sbjct:  236 GVQVPECLTKLSSKRGSAAKRARKNVESLSSDPAEMAKEQFQVAAQAGCDLGLKWLQRLEEEEKRLLRESSSTDNVSQAKPAFL 319

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A0D2TBT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G018600 PE=4 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.671e-49
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = -3

Query: 1530 FVFFLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1793
            F+ F   REMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA
Sbjct:   18 FILFNPHREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 105

HSP 2 Score: 51.2174 bits (121), Expect = 1.671e-49
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -2

Query: 1861 MLRQLFAKSTAKYATFSFIQFNPH 1932
            MLRQLFAKSTAK+ATFSFI FNPH
Sbjct:    1 MLRQLFAKSTAKHATFSFILFNPH 24

HSP 3 Score: 152.525 bits (384), Expect = 4.789e-38
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +NDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  133 ENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 205

HSP 4 Score: 130.183 bits (326), Expect = 4.473e-30
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = -2

Query:  340 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKWXXXXXXXXXXXXXXSNSTDGVSQSNTALL 591
            GA VPECLTKFSSKRGSAAKRT KNVDH AGNPVEMAKEQFRIAATAGCDL LKWLQRLEEVEERLLSESNSTDGVSQSNTALL
Sbjct:  205 GALVPECLTKFSSKRGSAAKRTKKNVDHPAGNPVEMAKEQFRIAATAGCDLGLKWLQRLEEVEERLLSESNSTDGVSQSNTALL 288

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A0D2RSC7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G018600 PE=4 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.548e-48
Identity = 93/122 (76.23%), Postives = 93/122 (76.23%), Query Frame = -3

Query: 1530 MPLSVLFSLIHTSVIXXXXXXXXXXXSQYVDNCGFVFFLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1895
            MPLSVLF LIHTS                            REMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA
Sbjct:    1 MPLSVLFCLIHTS----------------------------REMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 94

HSP 2 Score: 152.525 bits (384), Expect = 4.368e-38
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +NDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  122 ENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 194

HSP 3 Score: 130.183 bits (326), Expect = 3.584e-30
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = -2

Query:  340 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKWXXXXXXXXXXXXXXSNSTDGVSQSNTALL 591
            GA VPECLTKFSSKRGSAAKRT KNVDH AGNPVEMAKEQFRIAATAGCDL LKWLQRLEEVEERLLSESNSTDGVSQSNTALL
Sbjct:  194 GALVPECLTKFSSKRGSAAKRTKKNVDHPAGNPVEMAKEQFRIAATAGCDLGLKWLQRLEEVEERLLSESNSTDGVSQSNTALL 277

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: M5VQN6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009708mg PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.573e-44
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = -3

Query: 1530 GFVFFLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1796
            G   F  +REMHSRNKKAMELIAKGWSALKEVDRVIDYCELND RLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGAC+A
Sbjct:   18 GVSQFNQRREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDSRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACRA 106

HSP 2 Score: 141.354 bits (355), Expect = 4.683e-34
Identity = 64/73 (87.67%), Postives = 73/73 (100.00%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +N++VQSDQQAF+YLEKAVDQLHPGALYLLGAVYLTGDCVKKD++SALWCFHRAS+KGHAGAAIA+GSLLL+G
Sbjct:  134 ENEHVQSDQQAFHYLEKAVDQLHPGALYLLGAVYLTGDCVKKDVASALWCFHRASDKGHAGAAIAFGSLLLQG 206

HSP 3 Score: 70.0922 bits (170), Expect = 5.819e-10
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = -2

Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G ++PE +TKF SKRGS A+   KN +    +P+EMA+E+F IAA  GCDL LKW
Sbjct:  206 GVEIPESVTKFVSKRGSLARTARKNGESLVTDPIEMARERFHIAAKGGCDLGLKW 260

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: B9SR23_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0464880 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.957e-43
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = -3

Query: 1530 KREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1775
            KREMHSRNKKAME IAKGWSALKEVDRVIDYCELND RLIPLLR AKENFELALEADNSNTHAR+WLSKLHLKYHVPGACKA
Sbjct:    3 KREMHSRNKKAMEFIAKGWSALKEVDRVIDYCELNDSRLIPLLRTAKENFELALEADNSNTHARFWLSKLHLKYHVPGACKA 84

HSP 2 Score: 147.517 bits (371), Expect = 1.272e-36
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +NDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVK+D +SALWCFHRASEKGHAGAA+AYGSLLLRG
Sbjct:  112 ENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKQDFASALWCFHRASEKGHAGAAVAYGSLLLRG 184

HSP 3 Score: 70.4774 bits (171), Expect = 3.434e-10
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = -2

Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            GAQVPE L KF  KR S+AK+  K+ +    NPVE+AKEQF+IAA AGCDL LKW
Sbjct:  184 GAQVPESLMKFKLKRSSSAKKA-KDAEIAEMNPVELAKEQFQIAAKAGCDLGLKW 237

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: W9R294_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006280 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.619e-43
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = -3

Query: 1530 NCGFVFFLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1802
            + G + F  KR+MHSRNKKAME IAKGWSALKEVDRVIDY EL+DKRLIPLLRAAKENFELALEADNSNTHARYWLS+LHLKYHVPGACKA
Sbjct:   12 SLGLLLFNQKRDMHSRNKKAMEFIAKGWSALKEVDRVIDYAELHDKRLIPLLRAAKENFELALEADNSNTHARYWLSRLHLKYHVPGACKA 102

HSP 2 Score: 136.346 bits (342), Expect = 1.998e-32
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +N YVQSDQQAFYYLEKA DQ HPGALYLLGAVYLTGDCV++D++SALWCFH+ASEKGHAGAAIA GSLLL+G
Sbjct:  130 ENPYVQSDQQAFYYLEKAADQFHPGALYLLGAVYLTGDCVRRDMNSALWCFHKASEKGHAGAAIACGSLLLKG 202

HSP 3 Score: 73.9442 bits (180), Expect = 3.022e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -2

Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G ++PE LTK SSKR   +KR  K+++ R  N VEMAKEQF IAA AGCDL LKW
Sbjct:  202 GVELPESLTKLSSKRIPLSKRAIKDLESRPTNRVEMAKEQFEIAAKAGCDLGLKW 256

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A067GY95_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023425mg PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.712e-42
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = -3

Query: 1530 KREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1775
            KR +HSRNKKAMELIAKGWSALKEVDRVIDYCELND+RLIPLL+ AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA
Sbjct:   26 KRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107

HSP 2 Score: 149.828 bits (377), Expect = 3.590e-37
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +NDYVQSDQQAFYY+EKAVDQLHPGALYLLG VYLTGDCVKKDI+SALWCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  135 ENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRG 207

HSP 3 Score: 75.485 bits (184), Expect = 1.124e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = -2

Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G QVPECLTK ++KR SAAK+   N++    NPVE AKEQF +AA AGC+L L+W
Sbjct:  207 GVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRW 261

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: V4WCN3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009129mg PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.712e-42
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = -3

Query: 1530 KREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1775
            KR +HSRNKKAMELIAKGWSALKEVDRVIDYCELND+RLIPLL+ AKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA
Sbjct:   26 KRWLHSRNKKAMELIAKGWSALKEVDRVIDYCELNDRRLIPLLKTAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 107

HSP 2 Score: 149.828 bits (377), Expect = 3.590e-37
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -2

Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +NDYVQSDQQAFYY+EKAVDQLHPGALYLLG VYLTGDCVKKDI+SALWCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  135 ENDYVQSDQQAFYYIEKAVDQLHPGALYLLGTVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLRG 207

HSP 3 Score: 75.485 bits (184), Expect = 1.124e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = -2

Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G QVPECLTK ++KR SAAK+   N++    NPVE AKEQF +AA AGC+L L+W
Sbjct:  207 GVQVPECLTKLNAKRVSAAKKARANLESNLMNPVEKAKEQFEVAAQAGCNLGLRW 261

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2UER4_GOSRA	1.527e-58	93.26	Uncharacterized protein (Fragment) OS=Gossypium ra...	[more]
A0A061GPD9_THECC	8.780e-50	94.32	Binding, putative isoform 2 OS=Theobroma cacao GN=...	[more]
A0A061GNC7_THECC	1.015e-49	94.32	Binding isoform 1 OS=Theobroma cacao GN=TCM_038052...	[more]
A0A0D2TBT8_GOSRA	1.671e-49	94.32	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RSC7_GOSRA	9.548e-48	76.23	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
M5VQN6_PRUPE	1.573e-44	91.01	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9SR23_RICCO	2.957e-43	95.12	Putative uncharacterized protein OS=Ricinus commun...	[more]
W9R294_9ROSA	3.619e-43	86.81	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
A0A067GY95_CITSI	2.712e-42	93.90	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4WCN3_9ROSI	2.712e-42	93.90	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..21
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..123
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..27 score: 0.67
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0096983 ID=g.barbadense_cottongen_reftransV1_0096983; Name=g.barbadense_cottongen_reftransV1_0096983; organism=Gossypium barbadense; type=contig; length=1996bp
GTTGTCTTATAAAAAAGTACCTTTTCCCCCTATTTCACAAGTACATAATC
AATGAACGTTAATGAAAGGCAGTTCATAAAAACTATCCCTCACAGAATGA
CACTACAGAAAGGAACGATACATGATTCCTTAAAAAAAAAAAACTGTTGT
AATAAAGCTTGAATATGCAGTCCTCCACAATCGCGCTCATGCAATAAACC
AAATGTAAAGGTCAACCCCGCAATTGAGAAAGGATGAAATTATACCATGA
ATATTACTTCCTTCTAAACTTACATGTATACTGCAAACACTCATCCCTCT
TTTGTTATCATTTGGCCTCAACCTCATCTGCTCATATTATAACAACGCCG
TGTTCGATTGTGAAACACCATCTGTGGAGTTACTTTCACTCAACAGTCGC
TCCTCCACCTCCTCGAGTCTTTGCAACCACTTTAGTGCAAGGTCACATCC
AGCTGTTGCTGCTATTCGAAATTGTTCTTTTGCCATTTCAACAGGGTTCC
CTGCTCGGTGGTCCACATTCTTCGTTGTTCTTTTGGCAGCAGAACCCCTC
TTTGAACTAAATTTTGTTAGGCATTCTGGGACTTGAGCACCTAAGAAATA
GTACTATTTAACAATTCAATCAGCATATGTCAACCAAAGTAAAATGTAAA
GCTAGTTGTCATTTTCATTGCAATATGTTCCATTTTTACCTTCAATCCGA
GTTACACCAGCTAATACATGTTAATATGATAACTTCCTAAAAACTCACTA
GCTATGGTGTCAAAGGCAAATTCATGAGAAGGTGCATGTGTATATTTAAC
CTCTAAGTAGCAGAGATCCATATGCTATAGCTGCTCCAGCATGTCCTTTC
TCCGATGCCCGGTGGAAACACCATAATGCTGAAGAAATGTCTTTCTTCAC
ACAGTCCCCCGTCAAGTATACAGCACCTAGAAGGTAAAGAGCACCTGGAT
GAAGCTGGTCTACAGCTTTCTCCAAATAATAGAAAGCTTGTTGATCTGAT
TGGACATAGTCATTCTGTCCAACATAATGACCATGATGTTAGAAAGCTAA
AGATGTCATTTGCAGAAAGACTTAACAGCTCACTGAGGTGTACTCCTTAA
AAGAGTTCCTCAACAAAATTATTAAAGAAACATTTTAAGAAAAATGATCC
GAACCTCGACTCTTAGGCGACAACCCAATTCATATTGGGCGTCTTTATCG
CCCATATCTGCAGCTTCTACTAACAAAGCAGCACCTCTATCATAATAAGG
CCATTAGTTTTCCATTAGATTATTTAATCTAACATCTAATACAAACAGGA
TGAGATTACAACCAAAAAAACATTAACATGGAAATAAAACATAAGAAATC
ATATACTTAATAGAAGGATGCTAACAATCATTGAAAATTTTCACATGCAT
CAACTTAAGACACTAACATAATTTCAATCAATGTAGCTAACAATGGTGAG
AACAGAACACGCAAAATCTGAATTTTGTGCTCTCATAATTCAATAAAATA
ACTATTCAAGTTAATAACCAGACTTACACGGCTTTACATGCCCCAGGAAC
ATGGTACTTCAAATGCAATTTGGACAGCCAATACCTAGCATGTGTATTGG
AATTATCAGCTTCCAATGCCAACTCAAAATTCTCCTTTGCTGCCCTTAGG
AGAGGGATGAGGCGTTTATCATTGAGCTCGCAGTAATCAATAACTCTGTC
AACTTCTTTCAAAGCACTCCACCCTTTTGCTATTAACTCCATTGCTTTCT
TGTTTCTGCTATGCATCTCCCTCTTTAACAAAAAAAATACAAACCCACAA
TTGTCAACGTATTGGGAAAGTGAGAAATTTGAAAGAGAAAAACAGAGAAA
TATGACCGACGTGTGGATTAAACTGAATAAAACTGAAAGTGGCATATTTG
GCTGTTGATTTTGCGAAGAGCTGTCTCAGCATCGTCTCCCTAAGTGACTG
AGTTTGTGAAGAAATGGCTTTTCTGTACTCTGTTTTGATGTTGTTG

Search form

g.barbadense_cottongen_reftransV1_0096983, g.barbadense_cottongen_reftransV1_0096983 (contig) Gossypium barbadense

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