g.barbadense_cottongen_reftransV1_0091723, g.barbadense_cottongen_reftransV1_0091723 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091723
Unique Name	g.barbadense_cottongen_reftransV1_0091723
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2981

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At11	chromosome	g.barbadense_cottongen_reftransV1_0091723:1..2981 . At11:12799666..12805903 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A0D2SIU8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G126100 PE=4 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 3.302e-104
Identity = 115/122 (94.26%), Postives = 116/122 (95.08%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDP SNISLPVFGLASYKLRGSILTPGGIQESQQASSLLQAADNWLQCLQVRHPDFQFFLSHNSQWR
Sbjct:  284 WISVAW--YPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPYSNISLPVFGLASYKLRGSILTPGGIQESQQASSLLQAADNWLQCLQVRHPDFQFFLSHNSQWR 403

HSP 2 Score: 196.052 bits (497), Expect = 3.302e-104
Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RRTSDIGDAESSREISSAG+SDSETDRRVKGGIDGA  HHNS+RTNGSPMSTSSDEVEVGKSNG LVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW
Sbjct:  176 RRTSDIGDAESSREISSAGTSDSETDRRVKGGIDGAWAHHNSERTNGSPMSTSSDEVEVGKSNGQLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 289

HSP 3 Score: 322.013 bits (824), Expect = 2.704e-96
Identity = 164/172 (95.35%), Postives = 169/172 (98.26%), Query Frame = -1

Query: 2094 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2609
            GGYAVARTQTRDRFYNPPA+RRHQQLQR+QLTHRPLLSELRK SDKES VNSVDSVAETRADSDDSTLSR NSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQL+G+ETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSG+QLYVDPHQPR
Sbjct:    5 GGYAVARTQTRDRFYNPPALRRHQQLQRRQLTHRPLLSELRKPSDKESRVNSVDSVAETRADSDDSTLSRPNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLRGKETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGIQLYVDPHQPR 176

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A0D2SC91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G126100 PE=4 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 4.824e-98
Identity = 164/172 (95.35%), Postives = 169/172 (98.26%), Query Frame = -1

Query: 2094 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2609
            GGYAVARTQTRDRFYNPPA+RRHQQLQR+QLTHRPLLSELRK SDKES VNSVDSVAETRADSDDSTLSR NSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQL+G+ETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSG+QLYVDPHQPR
Sbjct:    5 GGYAVARTQTRDRFYNPPALRRHQQLQRRQLTHRPLLSELRKPSDKESRVNSVDSVAETRADSDDSTLSRPNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLRGKETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGIQLYVDPHQPR 176

HSP 2 Score: 138.272 bits (347), Expect = 2.389e-32
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = -1

Query: 1029 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISS 1292
            RRTSDIGDAESSREISSAG+SDSETDRRVKGGIDGA  HHNS+RTNGSPMSTSSDEVEVGKSNG LVFEYFEQEQPHHRKPLYDK SS
Sbjct:  176 RRTSDIGDAESSREISSAGTSDSETDRRVKGGIDGAWAHHNSERTNGSPMSTSSDEVEVGKSNGQLVFEYFEQEQPHHRKPLYDKASS 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A0D2QRJ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G126100 PE=4 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 6.858e-98
Identity = 164/172 (95.35%), Postives = 169/172 (98.26%), Query Frame = -1

Query: 2094 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2609
            GGYAVARTQTRDRFYNPPA+RRHQQLQR+QLTHRPLLSELRK SDKES VNSVDSVAETRADSDDSTLSR NSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQL+G+ETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSG+QLYVDPHQPR
Sbjct:    5 GGYAVARTQTRDRFYNPPALRRHQQLQRRQLTHRPLLSELRKPSDKESRVNSVDSVAETRADSDDSTLSRPNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLRGKETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGIQLYVDPHQPR 176

HSP 2 Score: 196.052 bits (497), Expect = 2.603e-52
Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RRTSDIGDAESSREISSAG+SDSETDRRVKGGIDGA  HHNS+RTNGSPMSTSSDEVEVGKSNG LVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW
Sbjct:  176 RRTSDIGDAESSREISSAGTSDSETDRRVKGGIDGAWAHHNSERTNGSPMSTSSDEVEVGKSNGQLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 289

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A061DT02_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_004737 PE=4 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.312e-78
Identity = 105/145 (72.41%), Postives = 114/145 (78.62%), Query Frame = -1

Query:  951 CKNLWSF*VALLLICK-------NLPMC*TIRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1364
            C + WS   A L++         N PM  TIRR S+  DAESSRE SSAGSSD ETDRRVKGG+DGA    NSQR +  PMS+SSDEVEVGKS GLLVFEYFEQEQPHHRKPLYDKISSLASQFP+IRMYRSC+LLPASWISVAW
Sbjct:  142 CFSEWSCFAAYLVLSSWLTVNSGNPPMYCTIRRPSEDSDAESSRETSSAGSSDCETDRRVKGGVDGAWDQPNSQRMSRPPMSSSSDEVEVGKSPGLLVFEYFEQEQPHHRKPLYDKISSLASQFPDIRMYRSCDLLPASWISVAW 286

HSP 2 Score: 159.844 bits (403), Expect = 1.312e-78
Identity = 91/118 (77.12%), Postives = 99/118 (83.90%), Query Frame = -2

Query:  536 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHN 889
            W+   W  YPIYRIPMGPTLQNLDASFLTFHSLST  +SK+ L+Y ASSSRK  G+D SS ISLPVFG+ASYKLRGSILTP G QE QQASSLLQAADNWL+ LQV  PDFQFF+SHN
Sbjct:  281 WISVAW--YPIYRIPMGPTLQNLDASFLTFHSLSTHFRSKSPLQYPASSSRKVSGIDASSKISLPVFGVASYKLRGSILTPNGSQEWQQASSLLQAADNWLRGLQVHLPDFQFFVSHN 396

HSP 3 Score: 162.925 bits (411), Expect = 1.234e-39
Identity = 94/147 (63.95%), Postives = 107/147 (72.79%), Query Frame = -1

Query: 2193 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLS-----ELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCY---SSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGV 2609
            GG+AV R QT DRFYNPPAVRR QQL ++Q   R  L      EL++ S KES VN VDS+AE R DSD+STLSR NSVC    SSP IA LTNLDRLMESVTPFVPA CFSE + +G+ TRE D+  +Y LGDLWECFSEWS +  
Sbjct:    5 GGFAVTRAQTGDRFYNPPAVRRQQQLLQQQQLQRQQLQRPLQKELQRPSKKESRVNLVDSMAEARTDSDESTLSRPNSVCSASPSSPKIANLTNLDRLMESVTPFVPAQCFSEEKRRGRRTRESDVHPHYCLGDLWECFSEWSCFAA 151

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A0D2RZC9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G143000 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.318e-73
Identity = 93/123 (75.61%), Postives = 98/123 (79.67%), Query Frame = -2

Query:  530 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQS---KNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQ 889
            W+   W  YPIYRIPMGPTLQNLDASFLTFHSLST SQ+   KNQL  SASSSRK CG D SS ISLPVFGLASYKLRGSILT    QE QQASSLL AADNWL  L+V  PDFQFF+SHNS+
Sbjct:  290 WISVAW--YPIYRIPMGPTLQNLDASFLTFHSLSTHSQTVTGKNQLHSSASSSRKVCGFDASSQISLPVFGLASYKLRGSILTSNCSQEWQQASSLLHAADNWLHGLRVHLPDFQFFVSHNSK 410

HSP 2 Score: 148.288 bits (373), Expect = 7.318e-73
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RR S+  D ESSR+ SSAGSSD E DRR+KGG+DGA   HNSQ T+  P S+SSDE+EVGKS G LVFEYFEQEQPHHRKPLYDK+SSLASQFP+IRMYRSC+LLPASWISVAW
Sbjct:  182 RRASEDSDVESSRQTSSAGSSDCEIDRRLKGGVDGAWEKHNSQGTSKPPTSSSSDEMEVGKSPGRLVFEYFEQEQPHHRKPLYDKVSSLASQFPDIRMYRSCDLLPASWISVAW 295

HSP 3 Score: 217.238 bits (552), Expect = 1.287e-58
Identity = 120/185 (64.86%), Postives = 135/185 (72.97%), Query Frame = -1

Query: 2085 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLS----------ELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR*AS 2609
            GG+AV RT T DRFYNPPAVRR  QL ++Q   R              ELR+    ES VNSVDS+AE+R D D+STLS       SSP +A LTNLDRLMESVTP VPA CFSEA+++G  T EV+L  Y+ LGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVP LSG+QLYVD H+PR AS
Sbjct:    5 GGFAVTRTHTEDRFYNPPAVRRQLQLLQQQQLERQQQQQQQLHRTLQKELRRPLKDESRVNSVDSLAESRTDLDESTLS----AAQSSPEVASLTNLDRLMESVTPLVPAQCFSEAKMRGWRTHEVNLHPYFCLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPSLSGIQLYVDQHRPRRAS 185

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A0D2R4N9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G143000 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.090e-72
Identity = 93/122 (76.23%), Postives = 97/122 (79.51%), Query Frame = -2

Query:  530 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQ--SKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQ 889
            W+   W  YPIYRIPMGPTLQNLDASFLTFHSLST SQ   KNQL  SASSSRK CG D SS ISLPVFGLASYKLRGSILT    QE QQASSLL AADNWL  L+V  PDFQFF+SHNS+
Sbjct:  290 WISVAW--YPIYRIPMGPTLQNLDASFLTFHSLSTHSQITGKNQLHSSASSSRKVCGFDASSQISLPVFGLASYKLRGSILTSNCSQEWQQASSLLHAADNWLHGLRVHLPDFQFFVSHNSK 409

HSP 2 Score: 147.902 bits (372), Expect = 1.090e-72
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RR S+  D ESSR+ SSAGSSD E DRR+KGG+DGA   HNSQ T+  P S+SSDE+EVGKS G LVFEYFEQEQPHHRKPLYDK+SSLASQFP+IRMYRSC+LLPASWISVAW
Sbjct:  182 RRASEDSDVESSRQTSSAGSSDCEIDRRLKGGVDGAWEKHNSQGTSKPPTSSSSDEMEVGKSPGRLVFEYFEQEQPHHRKPLYDKVSSLASQFPDIRMYRSCDLLPASWISVAW 295

HSP 3 Score: 217.238 bits (552), Expect = 1.456e-58
Identity = 120/185 (64.86%), Postives = 135/185 (72.97%), Query Frame = -1

Query: 2085 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLS----------ELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR*AS 2609
            GG+AV RT T DRFYNPPAVRR  QL ++Q   R              ELR+    ES VNSVDS+AE+R D D+STLS       SSP +A LTNLDRLMESVTP VPA CFSEA+++G  T EV+L  Y+ LGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVP LSG+QLYVD H+PR AS
Sbjct:    5 GGFAVTRTHTEDRFYNPPAVRRQLQLLQQQQLERQQQQQQQLHRTLQKELRRPLKDESRVNSVDSLAESRTDLDESTLS----AAQSSPEVASLTNLDRLMESVTPLVPAQCFSEAKMRGWRTHEVNLHPYFCLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPSLSGIQLYVDQHRPRRAS 185

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: W9RKK7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007474 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.943e-69
Identity = 88/122 (72.13%), Postives = 99/122 (81.15%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQ+LDASFLTFHSLST S+SK+Q +    S RK  G+D SS +SLP+FGLASYKLRGSILTP G  E QQA+SLLQAADNWLQ LQV  PDFQFF+SHNSQWR
Sbjct:  292 WISVAW--YPIYRIPVGPTLQSLDASFLTFHSLSTHSRSKSQPQLHTPSGRKVHGIDASSKMSLPIFGLASYKLRGSILTPSGPHEWQQANSLLQAADNWLQRLQVNLPDFQFFISHNSQWR 411

HSP 2 Score: 133.65 bits (335), Expect = 8.943e-69
Identity = 84/125 (67.20%), Postives = 94/125 (75.20%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHN-----SQRTN------GSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RR  D  DAESSRE SSAGSSD E +RRVKG +DG    HN     SQR N         MS+SSDE EV  S+G LVFEYFEQEQPHHRKPLYDK+S+LASQFPE++MYRSC+LLP+SWISVAW
Sbjct:  173 RRPGDDSDAESSRETSSAGSSDCEAERRVKGVVDGVWGRHNLMNLNSQRLNRLTLRDKHHMSSSSDENEVYNSSGSLVFEYFEQEQPHHRKPLYDKVSNLASQFPELKMYRSCDLLPSSWISVAW 297

HSP 3 Score: 196.052 bits (497), Expect = 5.192e-51
Identity = 107/177 (60.45%), Postives = 126/177 (71.19%), Query Frame = -1

Query: 2109 GGYAVARTQ-TRDRFYNPPAVRRHQQLQ-------RKQLTHRPLLSELRKRSDKESGVNSVDSV-AETRADSDDSTLSRRNSVCYSSPN-IAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVD 2609
            GG+AV R     DRFYNPPAVRRHQ+LQ        ++   RPL S+ R           VDS  AE R  SD++TLSR NSVC SSP+  A LTNLDR+MESVTPFVPA  FSEA+++G   RE D++ ++ LGDLWE F EWSVYGVGVPL+LNGSDSVKQYYVP LSG+QLY+D
Sbjct:    5 GGFAVTRHHHGADRFYNPPAVRRHQELQLRQPQSQPQRQLQRPLKSDAR-----------VDSPEAEARTHSDEATLSRPNSVCSSSPSRTANLTNLDRIMESVTPFVPAQFFSEARIRGWRNRENDMQPFFCLGDLWEAFGEWSVYGVGVPLVLNGSDSVKQYYVPSLSGIQLYID 170

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A0B0PVM6_GOSAR (Serine/threonine-protein phosphatase 4 regulatory subunit 4 OS=Gossypium arboreum GN=F383_13592 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.017e-68
Identity = 92/123 (74.80%), Postives = 97/123 (78.86%), Query Frame = -2

Query:  530 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQS---KNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQ 889
            W+   W  YPIYRIPMGPTLQNLDASFLTFHSLST SQ+   KNQL   ASSSRK CG D SS ISLPVFGLASYKLRGSILT    QE QQASSLL AADNWL  L+V  PDFQFF+SHNS+
Sbjct:  280 WISVAW--YPIYRIPMGPTLQNLDASFLTFHSLSTHSQTVTGKNQLHSPASSSRKVCGFDASSQISLPVFGLASYKLRGSILTSNCSQEWQQASSLLHAADNWLHGLRVHLPDFQFFVSHNSK 400

HSP 2 Score: 135.191 bits (339), Expect = 2.017e-68
Identity = 81/114 (71.05%), Postives = 89/114 (78.07%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RR S+  + ESSRE SSAGSSD ETDRR+KGG+ GAR  HNSQ TN  P S+ SDE+EVGKS G LVFEYFEQEQPHHRKPLYDK +        IRMYRSC+LLPASWISVAW
Sbjct:  180 RRASEDSEVESSRETSSAGSSDCETDRRLKGGVVGAREKHNSQGTNKPPTSSFSDEMEVGKSPGHLVFEYFEQEQPHHRKPLYDKAN--------IRMYRSCDLLPASWISVAW 285

HSP 3 Score: 222.631 bits (566), Expect = 1.423e-60
Identity = 120/183 (65.57%), Postives = 137/183 (74.86%), Query Frame = -1

Query: 2085 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLT--------HRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR*AS 2609
            GG+AV RT T DRFYNPPAVRR  QL ++Q          HR L  ELR+    ES VNSVDS++E+R D D+STLS       SSP +A LTNLDRLMESVTP VPA CFSEA+++G  T EV+LR Y+ LGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVP LSG+QL+VD  +PR AS
Sbjct:    5 GGFAVTRTHTEDRFYNPPAVRRQMQLLQQQQLERQQHQQLHRTLQKELRRPLKDESRVNSVDSLSESRTDLDESTLS----AAQSSPEVASLTNLDRLMESVTPLVPAQCFSEAKMRGWRTHEVNLRPYFCLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPSLSGIQLFVDQQRPRRAS 183

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: F6HZ75_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00960 PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.186e-63
Identity = 86/122 (70.49%), Postives = 95/122 (77.87%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIPMG TL++LDASFLTFHSLST S+SK Q +   SS RK  GVD    ISLPVFGLASYKL+GSILTP G +E QQASSLLQ A NWL+ LQV  PD+QFFLSHNSQWR
Sbjct:  296 WMSVAW--YPIYRIPMGQTLRDLDASFLTFHSLSTHSRSKGQTQLHGSSGRKVYGVDSLPKISLPVFGLASYKLKGSILTPSGNEEFQQASSLLQDAGNWLKRLQVDLPDYQFFLSHNSQWR 415

HSP 2 Score: 122.094 bits (305), Expect = 7.186e-63
Identity = 79/126 (62.70%), Postives = 86/126 (68.25%), Query Frame = -1

Query:  951 IRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNG-----------SPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1295
            +RR  +  DAESSRE SSAGSSD E +RR KG  DGA   HN    N            S MS+SSDE EV  S GL VFEY EQEQPH RKPL DKIS LA+QFPEI MYRSC+LLPASW+SVAW
Sbjct:  176 LRRPGEESDAESSRETSSAGSSDCEAERRAKGVADGAWSQHNPMNLNSQRMSRLSLREKSHMSSSSDEAEVCNSPGLRVFEYLEQEQPHIRKPLADKISVLAAQFPEIGMYRSCDLLPASWMSVAW 301

HSP 3 Score: 176.792 bits (447), Expect = 3.058e-44
Identity = 102/178 (57.30%), Postives = 123/178 (69.10%), Query Frame = -1

Query: 2097 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLS-----ELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPN--IAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQP 2609
            GG+AV+RT + DRFYN PA+RRHQQL  +Q             +LR     E         AE R DSDDSTLS+  SVC +SP    A +TN+DRL+ESVTP VPA   SEA ++G  TRE+D   +++LGDLWE F EWSVYGVGVPLLLNGSDSVKQYYVP+LSG+QLY+DP +P
Sbjct:    5 GGFAVSRTPSGDRFYNSPAMRRHQQLLLQQQQQVEQRRHQQQKQLRSEPAAE---------AEARTDSDDSTLSK-PSVCSASPPRPAANMTNIDRLVESVTPVVPAQYTSEASIRGWRTREIDHNPFFFLGDLWESFKEWSVYGVGVPLLLNGSDSVKQYYVPFLSGIQLYIDPRKP 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A067H806_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015322mg PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.276e-61
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAADNWL+ LQV  PDFQFF+SH+SQWR
Sbjct:  286 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADNWLRGLQVYLPDFQFFVSHSSQWR 404

HSP 2 Score: 114.005 bits (284), Expect = 5.276e-61
Identity = 72/126 (57.14%), Postives = 84/126 (66.67%), Query Frame = -1

Query:  951 IRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPM-----------STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1295
            +RR  +  DAESSRE S AGSSD E +RR KG     +   N    N   +           S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  166 LRRPGEDSDAESSRETSGAGSSDCEAERRAKGVACATQGQQNLMNVNLQILNRLTLRDKPTRSSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 291

HSP 3 Score: 162.155 bits (409), Expect = 2.210e-39
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = -1

Query: 2106 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDP 2609
            GG+ V R  + DRFYNPPA+RR QQ  + Q   +       K+  ++S V+SV+  AET AD+D+STL R +SVC +SP    L+NLDRL++SVTP+VP     E ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP
Sbjct:    5 GGFTVTRAHSGDRFYNPPAMRRQQQQLQLQRRLQ-------KQLQRKSQVDSVE--AETLADADESTLYRPDSVCSASPRNGDLSNLDRLIDSVTPYVPVQYLPETRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDP 163

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2SIU8_GOSRA	3.302e-104	94.26	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2SC91_GOSRA	4.824e-98	95.35	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QRJ4_GOSRA	6.858e-98	95.35	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DT02_THECC	1.312e-78	72.41	Uncharacterized protein OS=Theobroma cacao GN=TCM_...	[more]
A0A0D2RZC9_GOSRA	7.318e-73	75.61	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2R4N9_GOSRA	1.090e-72	76.23	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
W9RKK7_9ROSA	8.943e-69	72.13	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
A0A0B0PVM6_GOSAR	2.017e-68	74.80	Serine/threonine-protein phosphatase 4 regulatory ...	[more]
F6HZ75_VITVI	7.186e-63	70.49	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A067H806_CITSI	5.276e-61	71.31	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008507	Protein of unknown function DUF789	PFAM	PF05623	DUF789	coord: 170..253 e-value: 4.4E-27 score: 95.4
None	No IPR available	PANTHER	PTHR31343	FAMILY NOT NAMED	coord: 83..256
None	No IPR available	PANTHER	PTHR31343:SF4	SUBFAMILY NOT NAMED	coord: 83..256
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 34..52
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 23..33
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 53..257
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..22
None	No IPR available	TMHMM	TMhelix		coord: 5..22
None	No IPR available	TMHMM	TMhelix		coord: 35..52

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091723 ID=g.barbadense_cottongen_reftransV1_0091723; Name=g.barbadense_cottongen_reftransV1_0091723; organism=Gossypium barbadense; type=contig; length=2981bp
GCTCATTTTAATTAAGATTTGGTGCGGGTTCAGTCAGGCAGGCTATGTAT
CTCACATGACCAGGAATAACAATAACCAGTACTCCCTTCATTACAGAACT
AAAGAAAGCTTTATAAAAAGTAATTAAAAAAAAGGGTGGTAAGTTATACG
AGTATTTCCTTTTCTGGGAAGTACAGGTATGCGTATAAATCTGCAGATAC
AGTACAGGCATTTGAACTTTTGTCGATATTTGTAAATGTTCATTAGAGAA
TCATGTTGATGCAGAGAAACAAGGTTTCATGCTTATGATCCACAACCATA
CCATGACAAAACTTGAACCAGCCACACAGCAAAACAGTTGAGTGATGATC
AAGATTCCAATGAGCAAATCATAGTTTCTTGGATCCTGCCAGTAAATATT
GCAAAACAGCTGCCTTGTACCCATCGTTTCCAATGCCTGGGAATCTCGAT
GAATGCTATCTAGTAGCAGAAGCCAATCTCCTCCTCCATTATTGCATCAT
GCAACCACAAGCAGTCTTTGTTATCTCCACTGTGAGTTATGTGATAAAAA
AAACTGGAAATCGGGATGTCGGACTTGTAAGCATTGCAGCCAATTGTCAG
CAGCCTGTAACAGAGAGCTTGCTTGCTGCGATTCTTGGATACCACCGGGA
GTCAAAATTGAACCTCGCAATTTATAGGAAGCAAGGCCAAAAACAGGTAG
AGAGATATTTGAAGAGGGATCAACACCACAGGCTTTCCTACTGCTAGAAG
CAGAATACTCCAGCTGATTTTTACTTTGAGAACGTGTTGACAAAGAATGG
AACGTCAAGAAAGATGCATCCAGATTTTGGAGGGTTGGACCCATAGGTAT
TCTGTATATTGGGTACCTAGACCAAAAATAATATAACCAAACAAAGATAA
AGTTTAAAAAAACAGTGACTTGGCAATCTTTAGAAGTATAAGATGTTCTA
CCAAGCCACCGATATCCAACTTGCTGGCAATAGTTCACAGCTCCTGTACA
TCCTGATCTCTGGAAATTGAGATGCAAGACTTGAAATCTTGTCATATAAA
GGTTTCCGATGATGTGGTTGCTCTTGTTCAAAGTATTCAAAAACCAGCAG
CCCATTTGACTTGCCAACCTCCACTTCATCACTAGAGGTACTCATAGGAG
ATCCATTTGTCCTCTGGGAGTTGTGATGCACCCGAGCTCCATCAATACCA
CCTTTCACTCTCCTGTCTGTTTCAGAGTCGCTACTTCCAGCACTACTAAT
TTCTCTTGAAGACTCAGCATCACCGATGTCACTAGTCCTCCTGATAGTTC
AGCACATTGGCAAATTTTTGCAGATTAACAGTAAGGCAACTCAAAAGCTC
CATAGATTTTTACAAGCCTATCACCTAATATCAGGTATGCTGCTCAACTA
GTACCCAAAATAAGATTTAACAGACCAAGTATAACAGAATCAATGCCTGG
ATGTAGCAGGTAATTAGTCACTGATTTGCACAAAGTCAATGATCATTCTC
CTAAGCATACTGTCACAGTTACACTTCTGTCGAATAATAGTTATAGTCCA
AGAGAGAGAGCAAAGCAAGGCAGTGGTATTTGTGCAGATCAGATGCAGCG
TCATAAATTAATAATTTAACAATTAAGGAACCATTATTTTTCAGGTGCAT
TTCAGTATGTATAAAGTATAAAATCATGTATGGGAAGCATATTCCCTGGT
TGATGACAGTGCAACTAGAGAACACGTCAAATCAACATTATCTGTCAGCA
AATAATATTGTAGCAATGGATGCATTATGTAGGACAGCCAACCAACCATT
CCAAAACAAGTTAGGTGGTTTAAGTGAGAGCATTCAAGGTTTCTTGTCGC
CAGATAATAAGGAAAAAAAATCGATATAGATATCAACCATCAATTTAACT
TACTACATCATTGCAATATCAAGAGGAAGCATAAGAACCAGTAATGTATA
AGAATCTAGAATATTCATCGCTGCCACATAGTTAAGAGAGCAATCTGACA
TGATAAAAAACAATAAATACAACTACCATACTAACGGGAATTTATGAATA
GGGAAGAGGAAAATTTAGGAAGGATATAGCAGCAAGAAGCTCACCTCGGC
TGATGTGGATCTACATACAATTGTAAGCCTGACAAGTAAGGAACATAGTA
TTGCTTAACAGAATCACTCCCATTCAACAATAGCGGCACTCCGACTCCGT
ATACACTCCACTCGCTAAAACATTCCCAAAGATCACCGAGCCAATAATAT
AAGCGTAAATCCACTTCACGGGTTTCCTGTCCCTTCAGTTGTGCCTCAGA
GAAGCAATGAGCCGGGACAAAAGGGGTGACTGATTCCATGAGCCTATCCA
AATTGGTCAATTTAGCAATATTCGGCGAAGAGTAGCAGACCGAGTTACGC
CTCGACAATGTAGAGTCGTCAGAATCTGCCCGAGTCTCAGCCACTGAATC
GACTGAGTTGACTCCGCTCTCCTTATCTGACCGTTTCCGTAGCTCACTCA
GCAACGGTCTGTGTGTGAGTTGCTTCCTCTGCAACTGCTGATGTCGCCTC
ACCGCTGGCGGATTGTAGAATCGGTCCCTCGTCTGAGTTCGGGCTACCGC
GTACCCGCCTGAGTTTGACATGCTACTGCTATGGGGAGAAAAAATTAAAA
GTCTTAGCTCCTTTTGCCGGAGTAGCGTTGAAAGGGATTTTGGAGGGGCT
TTAAATTTGAAGAGGTAAAATAATGAGGACGAAATTGAAAAGGCAGCCCA
CGTACGACCCACGAGTGTTTTTCTCTTTGCGGCGTTGGTTTTTTTCTTTA
AAAGATTTGAAGAAGGAAATAAGAAATAAAAACATGTAAAAAAAAAAAAA
AAAGGTTTGAACAGAAAAAGGCTTTGTCGTCCTGAATTCTGATTTCGCTT
GCGTTTTCAACGAAGGTTATAGCGTAATTAAAAACGATCGAAATGACGAC
GTTGACCCTCTCTTTCCTAATTAATTATTAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR008507	DUF789

Search form

g.barbadense_cottongen_reftransV1_0091723, g.barbadense_cottongen_reftransV1_0091723 (contig) Gossypium barbadense

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