g.barbadense_cottongen_reftransV1_0091569, g.barbadense_cottongen_reftransV1_0091569 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A0D2N3P5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G067100 PE=4 SV=1) HSP 1 Score: 461.84 bits (1187), Expect = 7.051e-152 Identity = 265/277 (95.67%), Postives = 272/277 (98.19%), Query Frame = 3 Query: 423 MRTYKAKTNIEVNGQKGDGGIKNHGVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNEIEQDFQNYARKRHALEXXXXXXXXXXXXXXXVHSHDKTTMSNLEEFLQGSECQQPHKIEGLPRSLTGPSQNIINEMASGDCGSIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253 MR YKAKTNIEVNGQKGDGGIKNHGVNDFMA+KNPIQGASY ASPSEVERRKEENK H+MSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSI+SSISNEIEQDFQNYARKRHALEDLMKDDDDEDS+GRDVHSHDKTTMSNLEEFLQGSECQQPHK EGLPRSLTG SQ+I+N+MASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC Sbjct: 1 MRRYKAKTNIEVNGQKGDGGIKNHGVNDFMAQKNPIQGASYTASPSEVERRKEENKVHDMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSILSSISNEIEQDFQNYARKRHALEDLMKDDDDEDSEGRDVHSHDKTTMSNLEEFLQGSECQQPHKTEGLPRSLTGLSQSIVNKMASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 277
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A0D2PJJ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G067100 PE=4 SV=1) HSP 1 Score: 460.299 bits (1183), Expect = 2.587e-150 Identity = 265/277 (95.67%), Postives = 272/277 (98.19%), Query Frame = 3 Query: 423 MRTYKAKTNIEVNGQKGDGGIKNHGVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNEIEQDFQNYARKRHALEXXXXXXXXXXXXXXXVHSHDKTTMSNLEEFLQGSECQQPHKIEGLPRSLTGPSQNIINEMASGDCGSIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253 MR YKAKTNIEVNGQKGDGGIKNHGVNDFMA+KNPIQGASY ASPSEVERRKEENK H+MSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSI+SSISNEIEQDFQNYARKRHALEDLMKDDDDEDS+GRDVHSHDKTTMSNLEEFLQGSECQQPHK EGLPRSLTG SQ+I+N+MASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC Sbjct: 1 MRRYKAKTNIEVNGQKGDGGIKNHGVNDFMAQKNPIQGASYTASPSEVERRKEENKVHDMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSILSSISNEIEQDFQNYARKRHALEDLMKDDDDEDSEGRDVHSHDKTTMSNLEEFLQGSECQQPHKTEGLPRSLTGLSQSIVNKMASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 277 HSP 2 Score: 99.7525 bits (247), Expect = 4.205e-19 Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 3 Query: 1518 FLICCSRFARFYTSFT*DSIMSLRCYLEM*VFGGSYSILMSEYMQDNQVFINAGPESGVGLSLSEMDMDRDMRSHG 1745 FL C F F+ + + +S S VFGGSYSILMSEYMQDNQVFINAGPESGVGLSLSEMDMDRDMRSHG Sbjct: 275 FLCCMWLFNCFFCTNS-NSNSSYLIQFSF-VFGGSYSILMSEYMQDNQVFINAGPESGVGLSLSEMDMDRDMRSHG 348
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A061FYR2_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014371 PE=4 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 2.837e-63 Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 3 Query: 423 MRTYKAKTNIEVNGQKGDGGIKNHGVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNEIEQDFQNYARKRHAL 863 MR +K KTNIEVNGQ+GDGG+K+HGVNDFMA KNP QGASY AS E +R KE N+ N S+TFLASDAPE VVFIQESDYQS+KDIFIDREV SR+RL YK I SK++TDVNGD EEP K+L + SSISNEIEQDFQNY RK+HAL Sbjct: 1 MRAFKVKTNIEVNGQRGDGGVKDHGVNDFMAWKNPTQGASYPASLGEAKRSKEANQLLNTSDTFLASDAPERVVFIQESDYQSVKDIFIDREVTSRSRLNYKDISSKFHTDVNGDGEEPRKTLRLTSSISNEIEQDFQNYVRKQHAL 147 HSP 2 Score: 137.502 bits (345), Expect = 2.257e-31 Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 3 Query: 930 TTMSNLEEFLQGSECQQPHKIEGLPR-------SLTGPSQNIINEMASGDCGSIA----------ASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253 TTMS+LEEFL+G ECQQP+ + L R SLTGPSQ+ +N++A GDCGS A + PIPCSGS+SLRS+SSTASS+SFAFPILP+EW+GSPVRM EAD R+P+K QSW+TCFLC Sbjct: 231 TTMSSLEEFLEGPECQQPYNTKRLSRTEDRTSRSLTGPSQSFVNQLAHGDCGSFALGPLSGPITYSGPIPCSGSISLRSTSSTASSNSFAFPILPSEWSGSPVRMVEADQRQPRKQQSWRTCFLC 355
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: V4TQQ5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021731mg PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.018e-21 Identity = 94/263 (35.74%), Postives = 130/263 (49.43%), Query Frame = 3 Query: 615 LASDAPELVVFIQESDYQSIKDIFIDREVPSRNR-------LKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNE----IEQDFQNYARKRHALE-------------------------------XXXXXXXXXXXXXXXVHSHDKTTMSNLEEFLQ--GSECQQPHK-IEGLPRSLTGPSQNIINEMASGDCG-----SIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253 + SD PELV F +E DYQ +KDIF+DREVP N+ L +K I ++D D E +L MSS+SNE IE D ++ +LE E + +V S T ++ EEF SE + K ++ + +SLTG Q+ +++ D G S +PC+GS SLRSSSS+AS HSFAFPILP+EWNGSPVRM + D ++ +K + W+ FLC Sbjct: 1 MESDTPELVAFFEEQDYQFVKDIFMDREVPLMNKCLVENCELDHKIISCVLSSD---DRESDNGTLEAMSSMSNESKIRIENDTSTDVTRKSSLENWMLEHEDDSDATSCSEEELANFMLPSAAEIADDNSYSSEATSESEVESGSLNTTNSEEEFQNQADSETKITFKPLDEISQSLTGSGQSFVDQHDQVDPGEPLSFSARVEQVPCTGSNSLRSSSSSASLHSFAFPILPSEWNGSPVRMVKTDKKQTRKQKRWRKFFLC 260
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: B9IE17_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03510g PE=4 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.792e-10 Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 3 Query: 444 TNIEVNGQKGDGGIKNH-GVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRN-------RLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNE 818 T +E++ QKG+ +N GV+ FMA NP+ G Y S SE+E + K + + + SD PE+V F Q+S+Y +KDIF+D EV ++ +L + I S N DV S + + SISNE Sbjct: 46 TALELHRQKGEAVARNQPGVDAFMAWVNPVHGTEYPTSLSELEESRGRRKIY-IKSNVMDSDMPEMVAFFQDSNYHFVKDIFMDGEVHCKDICSVENCQLDHNSISSILNFDVESCSASTVGTQDSVPSISNE 177 HSP 2 Score: 67.3958 bits (163), Expect = 1.633e-8 Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 3 Query: 927 KTTMSNLEEFLQGSECQQPHKIEGLPRSLTGPSQNIINEMASGDCGSIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253 + T ++ E+ ++ +P +G+ +LT S+++ +E G+ A P P + SSHSFAFPILP+EW+GSP RMA D + ++HQ W+ FLC Sbjct: 263 RNTEADFEQVVETESMSKPE--DGMSGTLTSSSRSLGDENVQGESSFFAVDPPPGLTYSEGPIYCGSVSSHSFAFPILPSEWDGSPERMASTDQVQFRRHQRWRMRFLC 369
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A0A0LRX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015630 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 3.758e-7 Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 3 Query: 1143 FAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253 FAFPILPTEWNGSP RMA+ADP + ++ + W+ CF C Sbjct: 314 FAFPILPTEWNGSPERMAKADPLQTRRRKLWRLCFPC 350 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0091569 ID=g.barbadense_cottongen_reftransV1_0091569; Name=g.barbadense_cottongen_reftransV1_0091569; organism=Gossypium barbadense; type=contig; length=2825bpback to top |