g.barbadense_cottongen_reftransV1_0091569, g.barbadense_cottongen_reftransV1_0091569 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0091569
Unique Nameg.barbadense_cottongen_reftransV1_0091569
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2825
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt07chromosomeg.barbadense_cottongen_reftransV1_0091569:2..2825 .
Dt07:7533903..7537658 -
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A0D2N3P5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G067100 PE=4 SV=1)

HSP 1 Score: 461.84 bits (1187), Expect = 7.051e-152
Identity = 265/277 (95.67%), Postives = 272/277 (98.19%), Query Frame = 3
Query:  423 MRTYKAKTNIEVNGQKGDGGIKNHGVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNEIEQDFQNYARKRHALEXXXXXXXXXXXXXXXVHSHDKTTMSNLEEFLQGSECQQPHKIEGLPRSLTGPSQNIINEMASGDCGSIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253
            MR YKAKTNIEVNGQKGDGGIKNHGVNDFMA+KNPIQGASY ASPSEVERRKEENK H+MSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSI+SSISNEIEQDFQNYARKRHALEDLMKDDDDEDS+GRDVHSHDKTTMSNLEEFLQGSECQQPHK EGLPRSLTG SQ+I+N+MASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC
Sbjct:    1 MRRYKAKTNIEVNGQKGDGGIKNHGVNDFMAQKNPIQGASYTASPSEVERRKEENKVHDMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSILSSISNEIEQDFQNYARKRHALEDLMKDDDDEDSEGRDVHSHDKTTMSNLEEFLQGSECQQPHKTEGLPRSLTGLSQSIVNKMASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 277          
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A0D2PJJ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G067100 PE=4 SV=1)

HSP 1 Score: 460.299 bits (1183), Expect = 2.587e-150
Identity = 265/277 (95.67%), Postives = 272/277 (98.19%), Query Frame = 3
Query:  423 MRTYKAKTNIEVNGQKGDGGIKNHGVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNEIEQDFQNYARKRHALEXXXXXXXXXXXXXXXVHSHDKTTMSNLEEFLQGSECQQPHKIEGLPRSLTGPSQNIINEMASGDCGSIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253
            MR YKAKTNIEVNGQKGDGGIKNHGVNDFMA+KNPIQGASY ASPSEVERRKEENK H+MSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSI+SSISNEIEQDFQNYARKRHALEDLMKDDDDEDS+GRDVHSHDKTTMSNLEEFLQGSECQQPHK EGLPRSLTG SQ+I+N+MASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC
Sbjct:    1 MRRYKAKTNIEVNGQKGDGGIKNHGVNDFMAQKNPIQGASYTASPSEVERRKEENKVHDMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSILSSISNEIEQDFQNYARKRHALEDLMKDDDDEDSEGRDVHSHDKTTMSNLEEFLQGSECQQPHKTEGLPRSLTGLSQSIVNKMASGDCGSIAASPIPCSGSMSLRSSSSTASSHSFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 277          

HSP 2 Score: 99.7525 bits (247), Expect = 4.205e-19
Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 3
Query: 1518 FLICCSRFARFYTSFT*DSIMSLRCYLEM*VFGGSYSILMSEYMQDNQVFINAGPESGVGLSLSEMDMDRDMRSHG 1745
            FL C   F  F+ + + +S  S        VFGGSYSILMSEYMQDNQVFINAGPESGVGLSLSEMDMDRDMRSHG
Sbjct:  275 FLCCMWLFNCFFCTNS-NSNSSYLIQFSF-VFGGSYSILMSEYMQDNQVFINAGPESGVGLSLSEMDMDRDMRSHG 348          
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A061FYR2_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_014371 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.837e-63
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 3
Query:  423 MRTYKAKTNIEVNGQKGDGGIKNHGVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRNRLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNEIEQDFQNYARKRHAL 863
            MR +K KTNIEVNGQ+GDGG+K+HGVNDFMA KNP QGASY AS  E +R KE N+  N S+TFLASDAPE VVFIQESDYQS+KDIFIDREV SR+RL YK I SK++TDVNGD EEP K+L + SSISNEIEQDFQNY RK+HAL
Sbjct:    1 MRAFKVKTNIEVNGQRGDGGVKDHGVNDFMAWKNPTQGASYPASLGEAKRSKEANQLLNTSDTFLASDAPERVVFIQESDYQSVKDIFIDREVTSRSRLNYKDISSKFHTDVNGDGEEPRKTLRLTSSISNEIEQDFQNYVRKQHAL 147          

HSP 2 Score: 137.502 bits (345), Expect = 2.257e-31
Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 3
Query:  930 TTMSNLEEFLQGSECQQPHKIEGLPR-------SLTGPSQNIINEMASGDCGSIA----------ASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253
            TTMS+LEEFL+G ECQQP+  + L R       SLTGPSQ+ +N++A GDCGS A          + PIPCSGS+SLRS+SSTASS+SFAFPILP+EW+GSPVRM EAD R+P+K QSW+TCFLC
Sbjct:  231 TTMSSLEEFLEGPECQQPYNTKRLSRTEDRTSRSLTGPSQSFVNQLAHGDCGSFALGPLSGPITYSGPIPCSGSISLRSTSSTASSNSFAFPILPSEWSGSPVRMVEADQRQPRKQQSWRTCFLC 355          
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: V4TQQ5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021731mg PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.018e-21
Identity = 94/263 (35.74%), Postives = 130/263 (49.43%), Query Frame = 3
Query:  615 LASDAPELVVFIQESDYQSIKDIFIDREVPSRNR-------LKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNE----IEQDFQNYARKRHALE-------------------------------XXXXXXXXXXXXXXXVHSHDKTTMSNLEEFLQ--GSECQQPHK-IEGLPRSLTGPSQNIINEMASGDCG-----SIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253
            + SD PELV F +E DYQ +KDIF+DREVP  N+       L +K I    ++D   D E    +L  MSS+SNE    IE D      ++ +LE                                       E +   +V S    T ++ EEF     SE +   K ++ + +SLTG  Q+ +++    D G     S     +PC+GS SLRSSSS+AS HSFAFPILP+EWNGSPVRM + D ++ +K + W+  FLC
Sbjct:    1 MESDTPELVAFFEEQDYQFVKDIFMDREVPLMNKCLVENCELDHKIISCVLSSD---DRESDNGTLEAMSSMSNESKIRIENDTSTDVTRKSSLENWMLEHEDDSDATSCSEEELANFMLPSAAEIADDNSYSSEATSESEVESGSLNTTNSEEEFQNQADSETKITFKPLDEISQSLTGSGQSFVDQHDQVDPGEPLSFSARVEQVPCTGSNSLRSSSSSASLHSFAFPILPSEWNGSPVRMVKTDKKQTRKQKRWRKFFLC 260          
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: B9IE17_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03510g PE=4 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.792e-10
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  444 TNIEVNGQKGDGGIKNH-GVNDFMARKNPIQGASYMASPSEVERRKEENKAHNMSETFLASDAPELVVFIQESDYQSIKDIFIDREVPSRN-------RLKYKGIYSKYNTDVNGDSEEPGKSLSIMSSISNE 818
            T +E++ QKG+   +N  GV+ FMA  NP+ G  Y  S SE+E  +   K + +    + SD PE+V F Q+S+Y  +KDIF+D EV  ++       +L +  I S  N DV   S     +   + SISNE
Sbjct:   46 TALELHRQKGEAVARNQPGVDAFMAWVNPVHGTEYPTSLSELEESRGRRKIY-IKSNVMDSDMPEMVAFFQDSNYHFVKDIFMDGEVHCKDICSVENCQLDHNSISSILNFDVESCSASTVGTQDSVPSISNE 177          

HSP 2 Score: 67.3958 bits (163), Expect = 1.633e-8
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  927 KTTMSNLEEFLQGSECQQPHKIEGLPRSLTGPSQNIINEMASGDCGSIAASPIPCXXXXXXXXXXXXXXXXXFAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253
            + T ++ E+ ++     +P   +G+  +LT  S+++ +E   G+    A  P P            + SSHSFAFPILP+EW+GSP RMA  D  + ++HQ W+  FLC
Sbjct:  263 RNTEADFEQVVETESMSKPE--DGMSGTLTSSSRSLGDENVQGESSFFAVDPPPGLTYSEGPIYCGSVSSHSFAFPILPSEWDGSPERMASTDQVQFRRHQRWRMRFLC 369          
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Match: A0A0A0LRX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015630 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.758e-7
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 3
Query: 1143 FAFPILPTEWNGSPVRMAEADPRRPKKHQSWKTCFLC 1253
            FAFPILPTEWNGSP RMA+ADP + ++ + W+ CF C
Sbjct:  314 FAFPILPTEWNGSPERMAKADPLQTRRRKLWRLCFPC 350          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0091569 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0D2N3P5_GOSRA7.051e-15295.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PJJ7_GOSRA2.587e-15095.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FYR2_THECC2.837e-6374.83Uncharacterized protein isoform 1 OS=Theobroma cac... [more]
V4TQQ5_9ROSI5.018e-2135.74Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9IE17_POPTR1.792e-1036.09Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0A0LRX2_CUCSA3.758e-764.86Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33914:SF218S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-RELATED PROTEINcoord: 220..277
NoneNo IPR availablePANTHERPTHR33914FAMILY NOT NAMEDcoord: 220..277

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0091569 ID=g.barbadense_cottongen_reftransV1_0091569; Name=g.barbadense_cottongen_reftransV1_0091569; organism=Gossypium barbadense; type=contig; length=2825bp
CTATACCATCCTTTCATACATGAAATATTAAAAGAAATGAGAAAACGTTT
ATGTTTACAAATTGGAAGTTTATGGTTTTATTGATATTTAATATTGTGAG
CTGTCCATTTATTTCTTAACCTTTTTTGCTTTTTCTTCCCTTTTTAAACT
GCCCTCAATTCCTTTAACCATCCCACTGGCTGATTTGTATTTTAGCCTTT
TTTTCTATTATTATTAATCACTTGTTTATCACGGAAGAAAGTGCAGAAAG
TTTTCTGGGTTTTTCCTTTGCTTACTCAAGGGGATGAATTAGTCTCTAAT
TTTCAATAATTTGAAAGAAATAGCCTTTATTCAGAGATGGGACATACTGG
TAACTGCAGATATTTAAGAGAACAACTTGTTTTTGCTAAGAATTAGTACC
AGCTGGATTACATTAACTTGGGATGAGAACATATAAGGCGAAGACCAATA
TAGAAGTTAATGGACAAAAGGGTGATGGAGGAATCAAGAACCATGGAGTT
AATGATTTCATGGCTCGGAAGAATCCGATACAAGGAGCATCGTATATGGC
AAGTCCTAGTGAAGTAGAAAGACGAAAGGAAGAAAACAAAGCTCATAATA
TGAGCGAGACCTTTTTGGCATCTGATGCGCCGGAGCTGGTTGTATTTATT
CAAGAGAGTGATTATCAGTCAATCAAGGATATTTTCATAGACAGGGAAGT
TCCTTCGCGGAATCGATTAAAGTATAAGGGTATCTATTCCAAGTATAATA
CAGATGTGAATGGTGATAGTGAAGAACCTGGAAAATCTCTTAGTATAATG
TCATCTATTTCCAATGAGATTGAACAAGATTTTCAGAATTATGCAAGGAA
AAGGCATGCTCTTGAGGACTTAATGAAGGATGATGATGATGAAGATTCCG
ATGGAAGAGACGTTCACTCGCATGATAAGACTACCATGAGCAACCTTGAG
GAATTTTTACAAGGTTCAGAGTGTCAACAGCCTCATAAAATCGAAGGCTT
ACCGAGAAGCCTAACAGGTCCGAGTCAAAACATCATTAACGAAATGGCTT
CTGGTGATTGTGGTTCCATTGCAGCAAGTCCGATACCATGTTCCGGTAGC
ATGTCTCTGCGGTCAAGTAGTAGCACTGCCAGCTCTCATTCATTTGCTTT
TCCCATATTGCCAACGGAATGGAACGGCAGCCCGGTGAGAATGGCAGAAG
CTGACCCGAGACGGCCAAAGAAGCACCAAAGTTGGAAAACCTGTTTTCTC
TGCTGATTCTAAAAACATCATAATTTTCAACAATGGTGTCATATTAGAAA
GATAAAATTAGCAATGACGTTTGTCAATTGTCATACAGAGTGTTCTTTTA
CCTTCCAACATTATCATTCAACAAATTGCGAAGTCTGTTGGGTGCAAAAA
CAAATAAGACAAAGCTTGTCTCTTTTTCTTTCTTTATACTGTCTATGACT
GGTACAAAAAAAAATTTTAATATTTATACAAGTCAGTTCTGTTTTTTGTC
ATTTTCATTAGTTTCCATTTCTTATCTGCTGTTCCAGATTTGCAAGGTTT
TATACTAGTTTTACCTGAGATTCAATAATGTCCTTGAGATGTTACCTGGA
AATGTAGGTATTTGGAGGATCATACTCCATACTCATGTCTGAATATATGC
AGGATAATCAGGTTTTCATCAATGCTGGTCCAGAATCAGGAGTTGGCTTA
AGTTTGTCGGAAATGGACATGGATAGAGACATGCGTAGCCATGGCTGAAA
GTTCCTTGCTGGCTGTTTACGGCATAATTATAGTTTCCTCTCATGTGTCC
AGCTAAGATATTGTAACTTTGTCACCTTTGACTAGCAAATCAAAGCCGGC
TCTTCACTTTCAGACCTTTGCACACGTTTGAGGTCATTTTCCCTGGCAAG
AAATCAAACCATTTCGAGTTTAGGTCATATGTGTATGAAATTCAAACCGG
AGACATGAGCGTCATTTGCATGAGCCTCAGAGTAAAGTCATTATGAACCA
TGTAGTAGATGTTTACTAATTTCTGGCACGTCAAAATCATGGCTACAAAG
TAAAGGGCGCCAGAGAGAAGCAAGGAGTCATTTGAGTGAAGGACCACCTC
CATGTGCCTAACTTTTTTTGAGGTGCTAGTTTTCAGTCGCCGTCCATGGC
TATTGGAGACAACATGGTCCCTTGCTAGTTAAATCTTTAAATGATCCTTC
CCATTTGGTTATCAAGGCAAATATTTGCCTCATGCTTGGTGTATTGGGCC
ATTCTATGACCACCGGCCAACCATCTTCGTTGGTCTTGAATTGAACTGGT
TTTTGAGATATTTCACCTTCAGTACAACACCAATATAATAGCCAACTCAA
AGAAGAAAAATGGAGAAGTTGGCTCTTTGACCTTGTGAATAAAATCTAGA
TAAATGAGAGAGAGAAAGACTCCGGTTGAGTTCCGAGTAGGTTCGGAAGG
GAAACCTCTTCTCTGTGGACACTTGCTTCTTCTTTTTTCATTCATAGTAC
TTGAAGTTAAGATATGGAGATCTTGTTTAATAGATATCGATTTTTTTGTC
ATTAGCAGAGGGTTTTGCTGCTCATGAAAATAGTATATAACCTGCTGGAT
GGGGCATCTGGTTAAAAACAAAAAAGGCAGCTCACATGACTATAACCTGT
CCAGCCATTGCCGGCTAGGTTTCTCTATCAGGATGTTTCTTAGCAGTGGC
CAATGTTTTTTTGTTTGTTTGTCCTTTTGCTTAAAAGAAATTTACAGAAT
CCGATGGTACCTTAATGTTGCATTCCATCAAACCACAACTATAATGAGAG
ACTGTATAGTTAAAGAGTACAATTG
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