g.barbadense_cottongen_reftransV1_0091568, g.barbadense_cottongen_reftransV1_0091568 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091568
Unique Name	g.barbadense_cottongen_reftransV1_0091568
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2239

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.668e-17
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1

Query: 1513 STTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEP---------VCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974
            S   C+ C + GHLA  C  E +C    K GH+  DC  PR    + + C NC + GH  ++CT ++ C NC++TGH++R+C  EP          C  C    H+A+ C K      I G    + C  CGQ GH+S+DC +  +C NC   GH+  +CP A
Sbjct:    2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV--EFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISREC-PEPKKTSRFSKVSCYKCGGPNHMAKDCMK---EDGISG----LKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDCPKA 153

HSP 2 Score: 82.0333 bits (201), Expect = 2.624e-16
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1

Query: 1573 EPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNE-----KACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCF-----SIVICSNCGGRGHLHYECPSARM 1980
            +  C + GK+GHLA DC          RLC NC K GH   DCT       K C NC +TGH+  +C  +  C  CN +GH++R+C + K +S    RF  + C  CG P H+++DC      S + C  CG  GH+  +C + R+
Sbjct:    3 QKACYVCGKIGHLAEDC-------DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ-RCFNCNQTGHISRECPEPKKTS----RFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRL 136

HSP 3 Score: 59.6918 bits (143), Expect = 6.797e-9
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1

Query: 1705 NEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDR 1989
            ++KAC  C K GHLA DC +E +C  CN  GHV   C   +        F+   C NCG+ GH+  +C ++  C NC   GH+  ECP  +   R
Sbjct:    2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV-----EFKQ--CYNCGETGHVRSEC-TVQRCFNCNQTGHISRECPEPKKTSR 88

HSP 4 Score: 57.7658 bits (138), Expect = 3.441e-8
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1

Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEP---------VCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC 1758
            H+  EC +   C+NC + GH++ +CP EP          C   G   H+A+DC+  +        C  C +AGH   DC N++ C NC++TGH+++DC
Sbjct:   57 HVRSEC-TVQRCFNCNQTGHISRECP-EPKKTSRFSKVSCYKCGGPNHMAKDCM--KEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1

Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171

HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1

Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC   E  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1

Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171

HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1

Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC   E  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1

Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171

HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1

Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC   E  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.377e-13
Identity = 62/218 (28.44%), Postives = 86/218 (39.45%), Query Frame = 1

Query: 1492 HIAVEC--------NSTTICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLP-AHDARLCNNCYKAGHFVADC------------------------TNEKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV-------ICSNCGGRGHLHYECPSA 1974
            H A EC          +T C+ C E GH++ +CP E          C   G+ GH++RDC N   P A     C  C + GH   DC                        + ++ C  C   GH++RDC N         +  C  C  +GH++R C   +      G   D  C  CG+ GH+S++C S          C  CG  GH+  ECP A
Sbjct:   26 HYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEA 240

HSP 2 Score: 75.0998 bits (183), Expect = 1.936e-13
Identity = 63/205 (30.73%), Postives = 80/205 (39.02%), Query Frame = 1

Query: 1510 NSTTICWNCKEPGHLAGQCPY--------EPVCNM*GKMGHLARDCLNP-RLPAHDARLCNNCYKAGHFVADCTNEK--------ACNNCHKTGHLARDC------------------------HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC---------FSIVICSNCGGRGHLHYECPSA 1974
             S+T C NC + GH A +CP            C   G+ GH++R+C N  R  A  A  C  C +AGH   DC N           C  C + GHL+RDC                          +  C  C  +GH++R C   +      G   D  C  CG  GHIS+DC              C  CG  GH+  ECPSA
Sbjct:   13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA 214

HSP 3 Score: 70.0922 bits (170), Expect = 7.491e-12
Identity = 57/206 (27.67%), Postives = 80/206 (38.83%), Query Frame = 1

Query: 1522 ICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLPAHDA-----------------RLCNNCYKAGHFVADCTN---------EKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV------------ICSNCGGRGHLHYECPSA 1974
             C+ C E GH++  CP            C   G+ GHL+RDC + +  +                    R C  C  AGH   DC N         ++ C  C   GH++RDC N         +  C  C  SGH++R+C     +        D  C  CG+PGHIS++C                 C  CG  GH+  +CPS+
Sbjct:   71 TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSG-----DRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.001e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1

Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 164

HSP 2 Score: 70.4774 bits (171), Expect = 2.552e-12
Identity = 61/182 (33.52%), Postives = 76/182 (41.76%), Query Frame = 1

Query: 1513 STTICWNCKEPGHLAGQCPYE----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965
            S+  C+ C   GH A +CP                         +C   G+ GHLA+DC        DA  C NC + GH   DC       E+ C NC K GHLARDC   +E  C  C   GH+ + C K K             C  CG+ GH++ +C   S V C  CG  GHL  EC
Sbjct:    2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC----DLQEDA--CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.732e-13
Identity = 59/183 (32.24%), Postives = 76/183 (41.53%), Query Frame = 1

Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965
            S+  C+ C   GH A +CP                          +C   G+ GHLA+DC        + + C NC + GH   DC       E+ C NC K GHLARDC   +E  C  C   GH+ + C K K             C  CG+ GH++ +C   S V C  CG  GHL  EC
Sbjct:    2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC-----DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166

HSP 2 Score: 56.9954 bits (136), Expect = 6.532e-8
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 1

Query: 1594 GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            G+ GH AR+C  P        + +       F++  +    C  C ++GHLA+DC    +  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   10 GRTGHWAREC--PTGIGRGRGMRSRGRAGFQFMSS-SLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 133

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.890e-13
Identity = 52/144 (36.11%), Postives = 66/144 (45.83%), Query Frame = 1

Query: 1576 PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCT---NEKACNNCHKTGHLARDCHNEP------VCNICNISGHVARQCAKWKLSSD--IGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974
            P C   G+ GH AR+C           +C NC + GH  ++CT    EK C  C   GHL RDC + P       C  C   GH+AR C      S    GG   ++ C  CG  GH ++DC   V C +CG  GH  +EC  A
Sbjct:   17 PRCYNCGENGHQARECT-------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQA 153

HSP 2 Score: 70.8626 bits (172), Expect = 2.318e-12
Identity = 57/162 (35.19%), Postives = 70/162 (43.21%), Query Frame = 1

Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCP---YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC-TNEKA-------------CNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVI 1923
             H A EC   +IC+NC + GH A +C     E  C   G  GHL RDC +   P   A  C  C + GH   DC TN +              C  C   GH ARDC     C  C   GH + +C   + +SD         C  C QPGHI+ +C S VI
Sbjct:   26 GHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC---QQASD------GQLCYKCNQPGHIAVNCTSPVI 177

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.974e-13
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 1

Query: 1522 ICWNCKEPGHLAGQCPYE--PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C  +    C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 172

HSP 2 Score: 70.8626 bits (172), Expect = 2.038e-12
Identity = 59/189 (31.22%), Postives = 75/189 (39.68%), Query Frame = 1

Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965
            S+  C+ C   GH A +CP                                +C   G+ GHLA+DC        +   C NC + GH   DC       E+ C NC K GHLARDC   +E  C  C   GH+ + C K K             C  CG+ GH++ +C   S V C  CG  GHL  EC
Sbjct:    2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC-----DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172

HSP 3 Score: 56.9954 bits (136), Expect = 7.261e-8
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1

Query: 1717 CNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC    +  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 139

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.093e-11
Identity = 53/170 (31.18%), Postives = 68/170 (40.00%), Query Frame = 1

Query: 1525 CWNCKEPGHLAGQCPY-------------EPVCNM*GKMGHLARDCLNPRLPAHDARL--------CNNCYKAGHFVADCTNEKACNN-------------CHKTGHLARDC--HNEPV--CNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV 1920
            C+NC + GH A  C                  C   G +GH+ARDC    +   D R         C  C   GHF  DCT + A  N             C   GH+ARDC    +P   C  C  SGH+AR C +       GG   D  C  CG+ GH +++C S+ 
Sbjct:  134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGS----GGGGNDNACYKCGKEGHFARECSSVA 299

HSP 2 Score: 57.3806 bits (137), Expect = 1.565e-7
Identity = 48/163 (29.45%), Postives = 65/163 (39.88%), Query Frame = 1

Query: 1594 GKMGHLARDCLNPRLPAHDARL------CNNCYKAGHFVADCTN-------------EKACNNCHKTGHLARDCHNEPV---------------CNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFS----IVICSNCGGRGHLHYEC 1965
            G++GH+++DC          R       C NC   GHF  DCT+                C  C   GH+ARDC  + V               C  C   GH AR C +   + ++  G      C +CG  GHI++DC +       C  CGG GHL  +C
Sbjct:  106 GELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2TCD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 6.834e-104
Identity = 158/173 (91.33%), Postives = 163/173 (94.22%), Query Frame = 1

Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
             HIAV CNSTT+CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY
Sbjct:   25 GHIAVGCNSTTMCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 197

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2RRP0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.286e-103
Identity = 158/172 (91.86%), Postives = 163/172 (94.77%), Query Frame = 1

Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            HIAV CNSTT+CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY
Sbjct:   37 HIAVGCNSTTMCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 208

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2QP05_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G063900 PE=4 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 2.621e-103
Identity = 158/173 (91.33%), Postives = 161/173 (93.06%), Query Frame = 1

Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            SHIAVECNSTT+CWNCKEPGHLAGQ PYEPVCNM GKMGHLA+DCLNPRLPAHDARLCNNC KAGHF ADCTNEKACNNCHK GHL  DCHN+PVCNICNISGHVARQCAK KLSS IGG FRDI CRNCGQPGHISQDC SIVICSNCGGRGHLHYECPSARMYDRSGVRRY
Sbjct:   92 SHIAVECNSTTMCWNCKEPGHLAGQFPYEPVCNMCGKMGHLAQDCLNPRLPAHDARLCNNCNKAGHFAADCTNEKACNNCHKIGHLGHDCHNKPVCNICNISGHVARQCAKSKLSSVIGGHFRDIVCRNCGQPGHISQDCVSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 264

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2UX15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 7.079e-103
Identity = 159/175 (90.86%), Postives = 164/175 (93.71%), Query Frame = 1

Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            L  HIAV CNSTT+CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY
Sbjct:   65 LPGHIAVGCNSTTMCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 239

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0B0N4X8_GOSAR (Zinc finger GIS2 OS=Gossypium arboreum GN=F383_32724 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 5.307e-102
Identity = 156/173 (90.17%), Postives = 159/173 (91.91%), Query Frame = 1

Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            SHIA ECNS T+CWNCKEPGHL GQCP EPVCNM GKMGHLARDCLNPRLPA DARLCN CYKAGHF  DCTNEKACNNC KTGHLARDC NEPVCNICNISGHVARQCAK KLSSD+GGRFRDIFCRNCGQPGHISQD  SIVIC+NCGGRGHLHYECPSARMYDRSGVRRY
Sbjct:   99 SHIAAECNSITMCWNCKEPGHLPGQCPSEPVCNMCGKMGHLARDCLNPRLPAPDARLCNKCYKAGHFATDCTNEKACNNCRKTGHLARDCPNEPVCNICNISGHVARQCAKSKLSSDMGGRFRDIFCRNCGQPGHISQDGVSIVICNNCGGRGHLHYECPSARMYDRSGVRRY 271

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2UWY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 5.500e-97
Identity = 149/162 (91.98%), Postives = 154/162 (95.06%), Query Frame = 1

Query: 1522 ICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            +CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY
Sbjct:    1 MCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 162

HSP 2 Score: 59.6918 bits (143), Expect = 6.072e-7
Identity = 35/95 (36.84%), Postives = 46/95 (48.42%), Query Frame = 1

Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDAR-----LCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC 1758
             H A  C +   C NC++ GHL+  C  EPVCN+    GH+AR C   +L +          C NC + GH   DC +   CNN    GHL  +C
Sbjct:   54 GHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYEC 148

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A061FNJ8_THECC (Zinc knuckle family protein isoform 2 OS=Theobroma cacao GN=TCM_042822 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.191e-85
Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 1

Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRR 2004
            L  H+A ECNSTT+CWNCKEPGHLA QCP EPVC+M G MGHLARDC+N  LPAHDARLCNNCYK GH  ADCTNEKACNNC KTGHLARDC  EPVCNICNISGHVAR C K  LSSD+G  F++I CRNCGQPGHIS+DC SIVI +NC GRGHLHYECPSARMYD  GVRR
Sbjct:   68 LPGHVAAECNSTTMCWNCKEPGHLANQCPNEPVCHMCGNMGHLARDCINLGLPAHDARLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCLYEPVCNICNISGHVARHCTKSSLSSDMGSPFQNIICRNCGQPGHISRDCVSIVISNNCHGRGHLHYECPSARMYDCLGVRR 241

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A061FME6_THECC (Zinc knuckle family protein isoform 1 OS=Theobroma cacao GN=TCM_042822 PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.928e-85
Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 1

Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRR 2004
            L  H+A ECNSTT+CWNCKEPGHLA QCP EPVC+M G MGHLARDC+N  LPAHDARLCNNCYK GH  ADCTNEKACNNC KTGHLARDC  EPVCNICNISGHVAR C K  LSSD+G  F++I CRNCGQPGHIS+DC SIVI +NC GRGHLHYECPSARMYD  GVRR
Sbjct:   65 LPGHVAAECNSTTMCWNCKEPGHLANQCPNEPVCHMCGNMGHLARDCINLGLPAHDARLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCLYEPVCNICNISGHVARHCTKSSLSSDMGSPFQNIICRNCGQPGHISRDCVSIVISNNCHGRGHLHYECPSARMYDCLGVRR 238

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: F6HN80_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g00720 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.351e-84
Identity = 137/175 (78.29%), Postives = 147/175 (84.00%), Query Frame = 1

Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            L  HIA ECNSTT+CWNCKE GHLA QCP +PVC+M GKMGHLARDC +P LPAHDARLCNNCYK GH  ADCTNEKACNNCHKTGHLARDC NEPVCNICNISGHVARQC K +L  + GG FRDI C NCGQPGHIS+DC SIVIC+NCGGRGH  +ECPS RM+D   VRRY
Sbjct:  126 LPGHIAAECNSTTMCWNCKESGHLASQCPNDPVCHMCGKMGHLARDCSSPGLPAHDARLCNNCYKPGHIAADCTNEKACNNCHKTGHLARDCLNEPVCNICNISGHVARQCPKSRLVPETGGPFRDITCHNCGQPGHISRDCVSIVICNNCGGRGHQSFECPSVRMFDHV-VRRY 299

HSP 2 Score: 93.9745 bits (232), Expect = 1.768e-17
Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 1

Query: 1579 VCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYEC 1965
            +CN   + GH ARDC N         +CNNC   GH  A+C +   C NC ++GHLA  C N+PVC++C   GH+AR C+   L +          C NC +PGHI+ DC +   C+NC   GHL  +C
Sbjct:  101 LCNKCKRPGHFARDCPN-------VTVCNNCGLPGHIAAECNSTTMCWNCKESGHLASQCPNDPVCHMCGKMGHLARDCSSPGLPAHDAR-----LCNNCYKPGHIAADCTNEKACNNCHKTGHLARDC 217

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: W1PCY9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00012p00124660 PE=4 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.132e-72
Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = 1

Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSD----IGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            HIA EC + T+CWNC+EPGH+A +C  EP+C+  GK+GHLAR+C  P LP+ D RLCNNCYK GH  ADCTNEKACNNC KTGHLARDC N+PVCN+CN++GHVARQC K  L+       GG FRD+ CR C QPGHIS+DC  +VIC+NCGGRGH+ YECPS R  DR G+RRY
Sbjct:    6 HIASECTTKTLCWNCREPGHVASECSNEPICHTCGKVGHLARECSGPGLPSGDTRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPVCNVCNVAGHVARQCPKAGLNDGGGFRDGGAFRDVICRTCNQPGHISRDCVGVVICNNCGGRGHMAYECPSGRYMDR-GMRRY 180

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 11


Match Name	E-value	Identity	Description
GIS2_YEAST	2.668e-17	36.20	Zinc finger protein GIS2 OS=Saccharomyces cerevisi...	[more]
CNBP_RAT	1.329e-13	35.61	Cellular nucleic acid-binding protein OS=Rattus no...	[more]
CNBP_PONAB	1.329e-13	35.61	Cellular nucleic acid-binding protein OS=Pongo abe...	[more]
CNBP_HUMAN	1.329e-13	35.61	Cellular nucleic acid-binding protein OS=Homo sapi...	[more]
HEXP_LEIMA	1.377e-13	28.44	DNA-binding protein HEXBP OS=Leishmania major GN=H...	[more]
CNBP_BOVIN	2.001e-13	35.61	Cellular nucleic acid-binding protein OS=Bos tauru...	[more]
CNBP_CHICK	2.732e-13	32.24	Cellular nucleic acid-binding protein OS=Gallus ga...	[more]
BYR3_SCHPO	2.890e-13	36.11	Cellular nucleic acid-binding protein homolog OS=S...	[more]
CNBP_MOUSE	3.974e-13	34.59	Cellular nucleic acid-binding protein OS=Mus muscu...	[more]
CSP1_ARATH	7.093e-11	31.18	Cold shock protein 1 OS=Arabidopsis thaliana GN=CS...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2TCD2_GOSRA	6.834e-104	91.33	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RRP0_GOSRA	1.286e-103	91.86	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QP05_GOSRA	2.621e-103	91.33	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UX15_GOSRA	7.079e-103	90.86	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0N4X8_GOSAR	5.307e-102	90.17	Zinc finger GIS2 OS=Gossypium arboreum GN=F383_327...	[more]
A0A0D2UWY2_GOSRA	5.500e-97	91.98	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FNJ8_THECC	2.191e-85	79.31	Zinc knuckle family protein isoform 2 OS=Theobroma...	[more]
A0A061FME6_THECC	2.928e-85	79.31	Zinc knuckle family protein isoform 1 OS=Theobroma...	[more]
F6HN80_VITVI	1.351e-84	78.29	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W1PCY9_AMBTC	1.132e-72	65.91	Uncharacterized protein OS=Amborella trichopoda GN...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 58..74 e-value: 0.064 score: 18.6 coord: 39..55 e-value: 0.0046 score: 25.6 coord: 89..105 e-value: 0.0085 score: 24.0 coord: 108..124 e-value: 0.02 score: 21.7 coord: 20..36 e-value: 0.02 score: 21.7
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 85..124 e-value: 1.0E-11 score: 43.9
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 2..37 e-value: 2.9E-9 score: 36.3 coord: 39..74 e-value: 1.7E-9 score: 37.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 39..53 e-value: 0.002 score: 18.0 coord: 90..104 e-value: 5.1E-7 score: 29.4 coord: 20..36 e-value: 0.0042 score: 17.0 coord: 58..74 e-value: 0.0018 score: 18.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 90..103 score: 10.114
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 109..124 score: 9.109
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 40..53 score: 9.405
IPR001878	Zinc finger, CCHC-type	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 14..56
IPR001878	Zinc finger, CCHC-type	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 80..126
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 108..128 e-value: 1.1E-4 score: 22.0
None	No IPR available	PANTHER	PTHR23002:SF65	SUBFAMILY NOT NAMED	coord: 2..129
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 2..129

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091568 ID=g.barbadense_cottongen_reftransV1_0091568; Name=g.barbadense_cottongen_reftransV1_0091568; organism=Gossypium barbadense; type=contig; length=2239bp
GCTAGAGAAAGAAGAAGGGAAATCGCTGAGCTTTCAAAGGCTCATCGGCA
GAGGTATAACCCCAAAAGAGTTGTTCGATTTGATTGTCTTTGGGATAACT
TGGAAGTATTTATGTTAGTTGGGGTTCAAGTTGGTGTTTTTTGTGTGAGA
TAGTAACCTGTGTGTTTTGTGCTTTTTATGAATTTTGTAAACAAATAATT
CACCATAAGTAGTGCTAGCATGCTTTAGAGTTTTTGTTTTTATCAATCAA
TTATGTAGAAGGGAGAACTCTTTAGTTAAATACTAACAAAAACTATTGAA
GATAATGCTAAATAAACCTGTCGATGCCTTTTGTATATCTTGTCATAGGA
AAAAATGTATATCATGATTATGTTCCTTGGACTAGGGTGAGGGTCGGATG
TATGTTTATAACATGGTTATGTTCAATTTTTTTAAGTTTTTCTATGTATT
GAAGGGTTCTTGGAGGGTCATATTCTTGTACCTTCGCTTGGATATGTGTC
GGCTACTAGTGTTAGACATGAGTATTTCAAGAAAAATCAAGAGTGGGAGC
AACATGGCCATAGCCAGCTAGAAGGTTAAGGAATAGAGACATGGAATGCA
AGGATCAAGGGTATTGCACTACTCGAACTACCGTTTCAATATGCTCTCTG
CAACTGTTTCTGGTTGACTGTTAGGGAACTAGTTCAAAGTTTTTAGATTG
TCATACCGTATATTGTTAAGGATCTCTCCATTTTGCTGCTGAAGGTAACA
ACGGCACGGTCCCCAAGTTCAATACTTCTATGCTGCTAGAATACTTGGTC
GTTAGAAAGCAAACACATCTCGGACGGATATACGAGAATAATGTTTTATG
ATGTAGTTCCTAGTTGAACACTTGAACTGGGAATTTGCTTGCTTCATTTA
GTTATTCACGAGCTCTTGATTTCTAGGCCATGTTCACTTGTCAGTTTCAC
TTGCCACGCCTTACTTCGGTTATAATCGTGTAGGAGTTGAGGTGGTTTGC
TTGAATTTTTTAGGTCTAGTGTTCCCTATTTCTAGTTTTGTTCATGTGTT
AAAGGGTGCCATTAAGGCCTTACGGGAGGATACAAATATTAAGAATATGT
CATTTCGGAAAAGGGACCGGTTCATGGAACCTGCTGGAGGAGACTAGTCT
GGTTATACATCATAAAGCTTGAGGTCATAAACTATCTTCAATCCCGGCAT
CCTTTATTTTTGCTACGGTAGAATTTGTGGTTCCAACTTTTGAGGCTTCG
ATTTAGTGCTACGGTAGATTTGAGGCTTGGGCTTATACTAGCTGCTTTTC
ACATTGTTGACCTTTTCTCCTTTTTGAGAAATATGCTTTTCTTTGTTTCT
GTCATTTCCTCGTTTAAATTTTGTAGAACCTTTCACTTAAGCCAAAAGAA
AAAAAGGTATAACCTTCCATTTCATATTTGTTCGTTCTCAGACCATGAAA
TTCGTTAATGATCTGTTTTCTTCTCTTCGTTTCTTTGTAGTCACATTGCT
GTCGAGTGCAACTCAACCACTATATGTTGGAACTGTAAGGAGCCAGGGCA
TCTTGCTGGACAATGCCCCTATGAGCCTGTTTGCAATATGTGAGGTAAGA
TGGGTCACTTAGCTCGAGATTGCCTAAATCCCAGACTTCCGGCTCATGAT
GCAAGACTCTGCAACAACTGCTACAAGGCAGGTCACTTTGTCGCCGACTG
TACGAATGAGAAGGCTTGCAATAACTGTCATAAAACCGGTCACCTTGCTC
GTGACTGCCATAACGAGCCAGTTTGCAATATCTGCAATATATCAGGTCAT
GTAGCCAGACAATGTGCCAAGTGGAAACTGTCATCAGACATAGGAGGCCG
CTTCCGGGACATTTTTTGCCGCAACTGTGGCCAGCCAGGCCATATTAGTC
AGGACTGCTTTTCCATCGTCATATGCAGTAACTGTGGTGGAAGGGGTCAC
CTTCATTACGAGTGCCCTTCAGCAAGGATGTATGACCGCAGTGGCGTACG
TAGGTATTAACTACTTAACTAACCAACTTTTATAGGATTCATTCATTAGC
ATCCCTTTGTTTAACTCATCTTTATAATTTGATTTTCAATTGATTTATTC
TTGAAGTGATACGCCATTGTTGTTCTGTAATTAAGGCTGCAGTTTCCTCT
GCCTTGAAAATTGTCTTTTTTTTCTTCAGTGGTGAATATTGGCATTAAAT
TTTGGAGGGAATACCTAAAATTTTAGGAAATTTGAGGGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding

Search form

g.barbadense_cottongen_reftransV1_0091568, g.barbadense_cottongen_reftransV1_0091568 (contig) Gossypium barbadense

Pages

Pages