g.barbadense_cottongen_reftransV1_0094987, g.barbadense_cottongen_reftransV1_0094987 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy Swiss-Prot
Match: EMB74_ARATH (Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana GN=EMB1674 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.436e-12 Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 3 Query: 261 SPTPLANLS----LNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKVRFLIRLA 539 +P PLA ++ L SV L DWWL + K L + GF+ G G R+ S I+KRH++TTLE DGIT++I+GFIN SR L+NG S +V RL Sbjct: 50 TPFPLAVITPIKTLKSVTLSDWWLTK-KGKDLCIKGFESNGASGVRLFSSGTISKRHESTTLEAIDGITISINGFINRSRCLENGISIEVCNRFRLG 145
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A0B0PD53_GOSAR (Mis18-binding 1 OS=Gossypium arboreum GN=F383_10232 PE=4 SV=1) HSP 1 Score: 310.071 bits (793), Expect = 2.172e-95 Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 3 Query: 774 QVCSHFLFGFPYDWEEYASHSNEQXXXXXXXXXXXXXXXXXNAMSLPLPSLDNLHVPAARIRDLLMLSAGDSPNSVFDHMLLQKLSTHDSQNAAITTADSNMGNKDPKDCPYSVADGENSNCHKEKVIQNHVDDNNILCSRSKTTVGSWNEDVSILTPPNTRGVITRSMT 1283 +VCSHFLFGFPYDWEEYASHSNEQSFCSSTEASSTTSLLHSNAMSLPLPSLDNLHVPAARIRDLLMLSAGDSPNSVFDHMLLQKLSTHDSQNA TTADSNMGNKDPKDCPYSVADGENSNCHKEKVIQNHVDDNNILCSRSKTTVGSWNEDVSILTPPNTRGVITRSMT Sbjct: 111 KVCSHFLFGFPYDWEEYASHSNEQSFCSSTEASSTTSLLHSNAMSLPLPSLDNLHVPAARIRDLLMLSAGDSPNSVFDHMLLQKLSTHDSQNAESTTADSNMGNKDPKDCPYSVADGENSNCHKEKVIQNHVDDNNILCSRSKTTVGSWNEDVSILTPPNTRGVITRSMT 280 HSP 2 Score: 198.749 bits (504), Expect = 7.193e-54 Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 3 Query: 183 MGKRNRERRKSEKPCKSDQLVRVPIGSPTPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV 518 MGKRNRERRKSEKPCKSDQLV VPIGSPTPLANLSLNSVVLHDWWLCMV PKGLAVGGFQCRGRQGQRVLCSAAIAKRHDATTLETADGITVAISGFINTSRTL+NGFSPKV Sbjct: 1 MGKRNRERRKSEKPCKSDQLVAVPIGSPTPLANLSLNSVVLHDWWLCMVLPKGLAVGGFQCRGRQGQRVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLQNGFSPKV 112
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A0D2QUG2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G087600 PE=4 SV=1) HSP 1 Score: 303.908 bits (777), Expect = 4.399e-93 Identity = 163/170 (95.88%), Postives = 165/170 (97.06%), Query Frame = 3 Query: 774 QVCSHFLFGFPYDWEEYASHSNEQXXXXXXXXXXXXXXXXXNAMSLPLPSLDNLHVPAARIRDLLMLSAGDSPNSVFDHMLLQKLSTHDSQNAAITTADSNMGNKDPKDCPYSVADGENSNCHKEKVIQNHVDDNNILCSRSKTTVGSWNEDVSILTPPNTRGVITRSMT 1283 +VCSHFLFGFPYDWEEYASHSNEQSFCSSTEAS TTSLLHSNAMSLPLPSLDNLHVPAAR+RDLLMLSAGDSPNSVFDHMLLQKLSTHDSQNAAITTADSNMGNKDPK CPYSVADGENSNCHKEKVIQNHVDDNNILCSRSKTTVGS NEDV ILTP NTRGVITRSMT Sbjct: 111 KVCSHFLFGFPYDWEEYASHSNEQSFCSSTEASITTSLLHSNAMSLPLPSLDNLHVPAARLRDLLMLSAGDSPNSVFDHMLLQKLSTHDSQNAAITTADSNMGNKDPKVCPYSVADGENSNCHKEKVIQNHVDDNNILCSRSKTTVGSRNEDVGILTPTNTRGVITRSMT 280 HSP 2 Score: 200.675 bits (509), Expect = 1.301e-54 Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 3 Query: 183 MGKRNRERRKSEKPCKSDQLVRVPIGSPTPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV 518 MGKRNRERRKSEKPCKSDQLV VPIGSPTPLANLSLNSV+LHDWWLCMVQPKGLAVGGF+CRGRQGQRVLCSAAIAKRHDATTLETADGITVAISGFINTSRTL+NGFSPKV Sbjct: 1 MGKRNRERRKSEKPCKSDQLVPVPIGSPTPLANLSLNSVLLHDWWLCMVQPKGLAVGGFECRGRQGQRVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLQNGFSPKV 112
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A0D2RVV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G087600 PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.219e-54 Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 3 Query: 183 MGKRNRERRKSEKPCKSDQLVRVPIGSPTPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV 518 MGKRNRERRKSEKPCKSDQLV VPIGSPTPLANLSLNSV+LHDWWLCMVQPKGLAVGGF+CRGRQGQRVLCSAAIAKRHDATTLETADGITVAISGFINTSRTL+NGFSPKV Sbjct: 1 MGKRNRERRKSEKPCKSDQLVPVPIGSPTPLANLSLNSVLLHDWWLCMVQPKGLAVGGFECRGRQGQRVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLQNGFSPKV 112 HSP 2 Score: 144.436 bits (363), Expect = 2.710e-35 Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 774 QVCSHFLFGFPYDWEEYASHSNEQXXXXXXXXXXXXXXXXXNAMSLPLPSLDNLHVPAARIRDLLMLSAGDSPNSVFDHMLLQKLS 1031 +VCSHFLFGFPYDWEEYASHSNEQSFCSSTEAS TTSLLHSNAMSLPLPSLDNLHVPAAR+RDLLMLSAGDSPNSVFDHMLLQKLS Sbjct: 111 KVCSHFLFGFPYDWEEYASHSNEQSFCSSTEASITTSLLHSNAMSLPLPSLDNLHVPAARLRDLLMLSAGDSPNSVFDHMLLQKLS 196
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A061EQP9_THECC (Kinase interacting family protein, putative OS=Theobroma cacao GN=TCM_021549 PE=4 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 2.803e-38 Identity = 107/182 (58.79%), Postives = 123/182 (67.58%), Query Frame = 3 Query: 774 QVCSHFLFGFPYDWEEYAS-HSNEQXXXXXXXXXXXXXXXXXNAMSLPLPSLDNLHVPAARIRDLLMLSAGDSPNS-----VFDHMLLQKLSTHDSQNAAITTADSNMGNKDPKDCPYSVADGENSNCHKE-KVIQNHVDDNNILCSRSKTTVGSWNE-----DVSILTPPNTRGVITRSMT 1283 + CSHFL+GFPYDWEEYAS +SNE+S T+AS T+ NA+S SLDNL PA RIRDLLM SAGDS NS + DH +L KLSTH SQ+A T+ DS+MGN C YS ADGENSNCHK+ KV +NH+DDNNI SRS TV S N+ VSILT P GV TRSMT Sbjct: 106 EFCSHFLYGFPYDWEEYASQYSNEESAGRGTQASMTSHS---NAVSFLPASLDNL--PATRIRDLLMFSAGDSENSFLKRTITDH-VLGKLSTHASQDAR-TSVDSDMGNTHSNTCSYS-ADGENSNCHKKVKVNRNHMDDNNISDSRSTITVESQNDVQSKMGVSILTRPT--GVTTRSMT 277 HSP 2 Score: 136.732 bits (343), Expect = 4.709e-32 Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 183 MGKRNRERRKSEKPCKSDQLVRVPIGSPTPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGF 506 MG+R R R S KP KSD P+ + TPLANLSLN V+LHDWWL QP+GLA+GGF+CRGRQGQRV CSAAIAKRHDATTLETADGITVAISGFINTSRT +NGF Sbjct: 1 MGRR-RGTRYSPKPYKSDH----PVAAATPLANLSLNFVLLHDWWLGRAQPRGLAIGGFECRGRQGQRVFCSAAIAKRHDATTLETADGITVAISGFINTSRTHQNGF 103
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: V4VT71_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021601mg PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.826e-17 Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 3 Query: 252 PIGSP--TPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFL 527 P +P T L++ S SV LHDWWL + KGLAVGG R Q R CS AIAKRH+ TTLETADGIT+ +S IN SRT +NGF +V RFL Sbjct: 3 PTKTPRFTKLSSHSFKSVTLHDWWLVRAEGKGLAVGGIASRESQEVRAFCSTAIAKRHNTTTLETADGITITLSNLINRSRTNQNGFPSQVCNRFL 98
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A067DIE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023837mg PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.784e-17 Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 3 Query: 252 PIGSP--TPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFL 527 P +P T L++ S SV LHDWWL + GLAVGG R Q R CSAAIAKRH+ TTLETADGIT+ +S IN SRT +NGF +V RFL Sbjct: 3 PTKTPRFTKLSSHSFKSVTLHDWWLVRAEGNGLAVGGIASRESQEVRAFCSAAIAKRHNTTTLETADGITITLSNLINRSRTNQNGFPSQVCNRFL 98
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: U5FKI4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06390g PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.377e-16 Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 3 Query: 270 PLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFS 509 PL++LSLNSV LHDWWL V+ GLAV GF R G R+ CSAAI KRH T LE DGITV +SGFIN R +NGFS Sbjct: 41 PLSSLSLNSVWLHDWWLVKVEGNGLAVSGFTSREGVGTRLFCSAAIVKRHYTTILEAKDGITVTLSGFINRDRAHENGFS 120
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: B9HHD4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0007s02370g PE=4 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.881e-15 Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 267 TPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFS 509 TP+++LSL SV L+DWWL + GLAV GF R G R+ CSAAI +RH AT LE+ DGITV ISGFIN RT +NGFS Sbjct: 90 TPVSSLSLKSVWLYDWWLAKAEGDGLAVSGFTFREGVGARLFCSAAIVRRHYATILESKDGITVTISGFINRDRTRENGFS 170
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A078IAI5_BRANA (BnaC01g27800D protein OS=Brassica napus GN=BnaC01g27800D PE=4 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.772e-15 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 3 Query: 231 SDQLVRVPIG--SPTPLANLSLNSVVLHDWWLCM-VQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLI 530 SD++ R P S TP+ +L SV L DWWL KGL V GF+ +G R+ SA I+ RHD+TTLET+DG+TV+ISGFIN SR+L+NG S +V RFL+ Sbjct: 44 SDEIPRTPFSFKSITPIGG-TLKSVSLSDWWLTKKANEKGLGVTGFESKGGPEVRLFSSATISTRHDSTTLETSDGLTVSISGFINRSRSLQNGLSSEVCNRFLL 147
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A0D3AA16_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.847e-15 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 3 Query: 231 SDQLVRVPIG--SPTPLANLSLNSVVLHDWWLCM-VQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLI 530 SD++ R P S TP+ +L SV L DWWL KGL V GF+ +G R+ SA I+ RHD+TTLET+DG+TV+ISGFIN SR+L+NG S +V RFL+ Sbjct: 44 SDEIPRTPFSFKSITPIGG-TLKSVSLSDWWLTKKANEKGLGVAGFESKGGPEVRLFSSATISTRHDSTTLETSDGLTVSISGFINRSRSLQNGLSSEVCNRFLL 147 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 1
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094987 ID=g.barbadense_cottongen_reftransV1_0094987; Name=g.barbadense_cottongen_reftransV1_0094987; organism=Gossypium barbadense; type=contig; length=2176bpback to top |