g.barbadense_cottongen_reftransV1_0094928, g.barbadense_cottongen_reftransV1_0094928 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094928
Unique Name	g.barbadense_cottongen_reftransV1_0094928
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt07	chromosome	g.barbadense_cottongen_reftransV1_0094928:1..3578 . Dt07:27585889..27589766 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: A0A0B0N994_GOSAR (Septin spn6 OS=Gossypium arboreum GN=F383_12164 PE=4 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 2.116e-112
Identity = 190/231 (82.25%), Postives = 198/231 (85.71%), Query Frame = 1

Query: 1039 IFFLVSHKRIN-----DLVFICMYVFSSLVMKF---HEKCKLLSSILFNSLKGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            +F+LVS+  I+     +  FI       L M+    +     L   L N   GVSTYLGAAPIVACLERY+PNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK
Sbjct:    1 MFYLVSNTLISTVCNSEFSFIVFSNILGLQMRNIFKYSGSGSLPEKLVNMEGGVSTYLGAAPIVACLERYEPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 231

HSP 2 Score: 371.703 bits (953), Expect = 1.312e-111
Identity = 182/188 (96.81%), Postives = 184/188 (97.87%), Query Frame = 3

Query: 2745 ISREHVFWRIGAKQTEVSEHVFADVTKACISAELALPPFQLEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASPKAIDKTKQLVKEDKVQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQH-VLPKF 3305
            ISREHVFWRIGAKQTEVSEHVFADVTKACISAELALPPFQLEDMQNS LEYGLSSEISLSAAQS QKIPLY+IAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASPKAIDKTKQLVKED VQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQH VLP+F
Sbjct:  352 ISREHVFWRIGAKQTEVSEHVFADVTKACISAELALPPFQLEDMQNSYLEYGLSSEISLSAAQSSQKIPLYSIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASPKAIDKTKQLVKEDNVQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVVLPQF 539

HSP 3 Score: 223.402 bits (568), Expect = 7.048e-59
Identity = 104/107 (97.20%), Postives = 107/107 (100.00%), Query Frame = 2

Query: 2009 QHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 2329
            +HRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIG+HLS+WRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI
Sbjct:  231 KHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGNHLSSWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 337

HSP 4 Score: 83.5741 bits (205), Expect = 3.681e-13
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 2

Query:  869 VVCNSEFSFIVFSNILGLQMRNIFKYSGSGSLPEKLVNMEG 991
             VCNSEFSFIVFSNILGLQMRNIFKYSGSGSLPEKLVNMEG
Sbjct:   12 TVCNSEFSFIVFSNILGLQMRNIFKYSGSGSLPEKLVNMEG 52

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: A0A0D2PSL8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G170100 PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 7.368e-112
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 1

Query: 1153 LFNSLKGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            L N   GVSTYLGAAPIVACLERY+PNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFP+LLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDF+GVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK
Sbjct:  151 LVNMEGGVSTYLGAAPIVACLERYRPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPSLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFQGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 335

HSP 2 Score: 227.639 bits (579), Expect = 3.902e-61
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 3

Query:  189 MEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 512
            MEKQ YEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA
Sbjct:    1 MEKQAYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 108

HSP 3 Score: 221.861 bits (564), Expect = 4.134e-59
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 2

Query: 2009 QHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 2329
            +HRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSC+LSYIIGLDSLKAT I HHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI
Sbjct:  335 KHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCILSYIIGLDSLKATCIDHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 441

HSP 4 Score: 68.1662 bits (165), Expect = 2.331e-8
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:  646 VDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 750
            +DPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG
Sbjct:  109 MDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 143

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: A0A0D2PZY3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G170100 PE=4 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 1.103e-111
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 1

Query: 1153 LFNSLKGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            L N   GVSTYLGAAPIVACLERY+PNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFP+LLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDF+GVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK
Sbjct:  151 LVNMEGGVSTYLGAAPIVACLERYRPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPSLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFQGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 335

HSP 2 Score: 231.106 bits (588), Expect = 1.753e-62
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 2

Query: 2009 QHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGIRYISS 2344
            +HRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSC+LSYIIGLDSLKAT I HHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGIRYISS
Sbjct:  335 KHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCILSYIIGLDSLKATCIDHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGIRYISS 446

HSP 3 Score: 227.254 bits (578), Expect = 3.813e-61
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 3

Query:  189 MEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 512
            MEKQ YEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA
Sbjct:    1 MEKQAYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 108

HSP 4 Score: 67.781 bits (164), Expect = 2.341e-8
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:  646 VDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 750
            +DPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG
Sbjct:  109 MDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 143

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: A0A0D2QRI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G170100 PE=4 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.241e-110
Identity = 178/187 (95.19%), Postives = 182/187 (97.33%), Query Frame = 3

Query: 2745 ISREHVFWRIGAKQTEVSEHVFADVTKACISAELALPPFQLEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASPKAIDKTKQLVKEDKVQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVLPKF 3305
            I REHVFWRIG+KQTEVSEHVFADVTKACISAELALPPFQ EDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSV+SVL DASPKAID+TKQLV ED V+VEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVLPKF
Sbjct:  444 IGREHVFWRIGSKQTEVSEHVFADVTKACISAELALPPFQQEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVVSVLLDASPKAIDETKQLVNEDNVKVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVLPKF 630

HSP 2 Score: 335.88 bits (860), Expect = 1.667e-97
Identity = 166/185 (89.73%), Postives = 169/185 (91.35%), Query Frame = 1

Query: 1153 LFNSLKGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            L N   GVSTYLGAAPIVACLERY+PNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFP+LLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYE            VVDF+GVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK
Sbjct:  151 LVNMEGGVSTYLGAAPIVACLERYRPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPSLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYE------------VVDFQGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 323

HSP 3 Score: 228.409 bits (581), Expect = 8.077e-60
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 3

Query:  189 MEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 512
            MEKQ YEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA
Sbjct:    1 MEKQAYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 108

HSP 4 Score: 222.246 bits (565), Expect = 8.087e-58
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 2

Query: 2009 QHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 2329
            +HRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSC+LSYIIGLDSLKAT I HHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI
Sbjct:  323 KHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCILSYIIGLDSLKATCIDHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 429

HSP 5 Score: 67.781 bits (164), Expect = 3.410e-8
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:  646 VDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 750
            +DPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG
Sbjct:  109 MDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 143

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: A0A0D2NAF2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G170100 PE=4 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.343e-110
Identity = 178/187 (95.19%), Postives = 182/187 (97.33%), Query Frame = 3

Query: 2745 ISREHVFWRIGAKQTEVSEHVFADVTKACISAELALPPFQLEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASPKAIDKTKQLVKEDKVQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVLPKF 3305
            I REHVFWRIG+KQTEVSEHVFADVTKACISAELALPPFQ EDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSV+SVL DASPKAID+TKQLV ED V+VEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVLPKF
Sbjct:  456 IGREHVFWRIGSKQTEVSEHVFADVTKACISAELALPPFQQEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVVSVLLDASPKAIDETKQLVNEDNVKVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVLPKF 642

HSP 2 Score: 369.777 bits (948), Expect = 1.207e-109
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 1

Query: 1153 LFNSLKGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            L N   GVSTYLGAAPIVACLERY+PNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFP+LLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDF+GVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK
Sbjct:  151 LVNMEGGVSTYLGAAPIVACLERYRPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPSLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFQGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 335

HSP 3 Score: 228.024 bits (580), Expect = 1.016e-59
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 3

Query:  189 MEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 512
            MEKQ YEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA
Sbjct:    1 MEKQAYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 108

HSP 4 Score: 222.246 bits (565), Expect = 9.524e-58
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 2

Query: 2009 QHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 2329
            +HRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSC+LSYIIGLDSLKAT I HHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI
Sbjct:  335 KHRGWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCILSYIIGLDSLKATCIDHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 441

HSP 5 Score: 67.781 bits (164), Expect = 3.738e-8
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:  646 VDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 750
            +DPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG
Sbjct:  109 MDPVSAREKVLEVASSLGIRLSVAVAHEVFVNESG 143

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: A0A061DT93_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_005376 PE=4 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 1.573e-104
Identity = 165/185 (89.19%), Postives = 176/185 (95.14%), Query Frame = 1

Query: 1153 LFNSLKGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            L  S KG+STYLGAAPIV CLERYQPNV+I SRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADK+RNLSF +LLDLSLPYAEIS SGE+CVMKAEGSGG+LNF TCAEQLLYEVGDPSAYITPDVV+DF+GV+FQPL+ SKVLCIGAKPSAHPVPDKLLQL+PK
Sbjct:    4 LLMSQKGISTYLGAAPIVECLERYQPNVIIASRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKHRNLSFSHLLDLSLPYAEISFSGEVCVMKAEGSGGVLNFSTCAEQLLYEVGDPSAYITPDVVIDFQGVSFQPLTSSKVLCIGAKPSAHPVPDKLLQLVPK 188

HSP 2 Score: 255.758 bits (652), Expect = 9.681e-71
Identity = 132/189 (69.84%), Postives = 149/189 (78.84%), Query Frame = 3

Query: 2745 ISREHVFWRIGAKQTEVSE-----HVFADVTKACISAELALPPFQLEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASPKAIDKTKQLVKEDKVQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVL 3296
            I REH+FWRI AKQTEVSE     HVF DV K C+  E  LPPF  ED+ NS      S EI LSA QS QKIPLY++AHSRAGDKGNDLNFS+IP+  Q+ E LK+IITPQWVK V+SVL D+SPKAID+T++ + E  V+VEIYEV GI SLNVVVRNILDGGVNCSRRIDRHGK ISDLILCQHV+
Sbjct:  309 IGREHIFWRIAAKQTEVSESKCQKHVFRDVMKDCVLHEPTLPPFPEEDIHNSS-----SPEIGLSATQSRQKIPLYSVAHSRAGDKGNDLNFSIIPYVVQDVERLKIIITPQWVKGVVSVLLDSSPKAIDETEKWMDE-HVKVEIYEVKGIHSLNVVVRNILDGGVNCSRRIDRHGKTISDLILCQHVV 491

HSP 3 Score: 199.134 bits (505), Expect = 5.610e-51
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 2

Query: 2018 GWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 2329
            GWKGWGEISYGGYECVKRAKAAE LVRSWMEE FPGVS CVLSYIIGLDSLKATSI ++ STW+ASEDIRLRMDGLFQEKKHA+QL KEFTALYTNGPA GGGI
Sbjct:  191 GWKGWGEISYGGYECVKRAKAAEFLVRSWMEEVFPGVSCCVLSYIIGLDSLKATSIDNYSSTWKASEDIRLRMDGLFQEKKHAEQLVKEFTALYTNGPASGGGI 294

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: A0A061DUE4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_005376 PE=4 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 4.590e-102
Identity = 163/180 (90.56%), Postives = 174/180 (96.67%), Query Frame = 1

Query: 1168 KGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            KG+STYLGAAPIV CLERYQPNV+I SRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADK+RNLSF +LLDLSLPYAEIS SGE+CVMKAEGSGG+LNF TCAEQLLYEVGDPSAYITPDVV+DF+GV+FQPL+ SKVLCIGAKPSAHPVPDKLLQL+PK
Sbjct:  157 KGISTYLGAAPIVECLERYQPNVIIASRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKHRNLSFSHLLDLSLPYAEISFSGEVCVMKAEGSGGVLNFSTCAEQLLYEVGDPSAYITPDVVIDFQGVSFQPLTSSKVLCIGAKPSAHPVPDKLLQLVPK 336

HSP 2 Score: 256.144 bits (653), Expect = 2.193e-69
Identity = 132/189 (69.84%), Postives = 149/189 (78.84%), Query Frame = 3

Query: 2745 ISREHVFWRIGAKQTEVSE-----HVFADVTKACISAELALPPFQLEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASPKAIDKTKQLVKEDKVQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVL 3296
            I REH+FWRI AKQTEVSE     HVF DV K C+  E  LPPF  ED+ NS      S EI LSA QS QKIPLY++AHSRAGDKGNDLNFS+IP+  Q+ E LK+IITPQWVK V+SVL D+SPKAID+T++ + E  V+VEIYEV GI SLNVVVRNILDGGVNCSRRIDRHGK ISDLILCQHV+
Sbjct:  457 IGREHIFWRIAAKQTEVSESKCQKHVFRDVMKDCVLHEPTLPPFPEEDIHNSS-----SPEIGLSATQSRQKIPLYSVAHSRAGDKGNDLNFSIIPYVVQDVERLKIIITPQWVKGVVSVLLDSSPKAIDETEKWMDE-HVKVEIYEVKGIHSLNVVVRNILDGGVNCSRRIDRHGKTISDLILCQHVV 639

HSP 3 Score: 199.519 bits (506), Expect = 4.076e-50
Identity = 101/141 (71.63%), Postives = 110/141 (78.01%), Query Frame = 2

Query: 2018 GWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI-----RYISS*FYIYGMYHIY---------VRKTKCQ 2398
            GWKGWGEISYGGYECVKRAKAAE LVRSWMEE FPGVS CVLSYIIGLDSLKATSI ++ STW+ASEDIRLRMDGLFQEKKHA+QL KEFTALYTNGPA GGGI     + I     + G  HI+         V ++KCQ
Sbjct:  339 GWKGWGEISYGGYECVKRAKAAEFLVRSWMEEVFPGVSCCVLSYIIGLDSLKATSIDNYSSTWKASEDIRLRMDGLFQEKKHAEQLVKEFTALYTNGPASGGGISTGLKKEIVLEKQLIGREHIFWRIAAKQTEVSESKCQ 479

HSP 4 Score: 197.208 bits (500), Expect = 2.476e-49
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 3

Query:  189 MEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 512
            MEKQ+  EI++C+IK R N QRRKDKVYIGCGAGFGGDRPMAA KLLNRVKEL+YIVLECLAERTLAERY+AM SGGDGYDSNISEWMSLLLPLAV+RGTCIITNMGA
Sbjct:    1 MEKQSCGEIYNCMIKQRTNRQRRKDKVYIGCGAGFGGDRPMAALKLLNRVKELDYIVLECLAERTLAERYRAMVSGGDGYDSNISEWMSLLLPLAVERGTCIITNMGA 108

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: M5X703_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002638mg PE=4 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.461e-88
Identity = 147/195 (75.38%), Postives = 165/195 (84.62%), Query Frame = 1

Query: 1123 HEKCKLLSSILFNSLKGVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIPK 1707
            HEK  ++         G+STYLGAAPIV CLE+YQPNV+ITSRVADAALFLAPM+YELGWNWD LE LAQGSLAGHLLECGCQLTGGYFMHP DK+RN+SF  LLDLSLPYAEISS G++ V KAEG+GG+LNF TCAEQLLYEVGDP AYITPDV++D R V+F P+S  KVLC GAKPSA  VPDKLL+L+PK
Sbjct:  150 HEKSYIMEG-------GISTYLGAAPIVECLEKYQPNVIITSRVADAALFLAPMIYELGWNWDSLEQLAQGSLAGHLLECGCQLTGGYFMHPGDKSRNMSFSQLLDLSLPYAEISSDGKVFVAKAEGTGGVLNFSTCAEQLLYEVGDPGAYITPDVIIDIRDVSFYPISSCKVLCAGAKPSAVSVPDKLLRLVPK 337

HSP 2 Score: 188.734 bits (478), Expect = 1.656e-46
Identity = 103/188 (54.79%), Postives = 125/188 (66.49%), Query Frame = 3

Query: 2745 ISREHVFWRIGAKQTEVSEHVFADVTKACISAELALPPFQLEDMQNSCLEYGLSSEISLSAAQSGQKIPLYNIAHSRAGDKGNDLNFSVIPHCPQNFEMLKLIITPQWVKSVISVLPDASP----KAIDKTKQLVKEDKVQVEIYEVHGIQSLNVVVRNILDGGVNCSRRIDRHGKCISDLILCQHVL 3296
            + REHV WR   K      H  A  +  C+  E  L   Q  ++++S          + S A SG KIPLY++AH RAGDKGNDLNFS+IPH P +   LK IITPQWVK V+S L ++SP     AI++  + V E+ V+VEIYEV GI+SLNVVVR+ILDGGVNCSRRIDRHGK ISDLILCQ VL
Sbjct:  457 VKREHVLWRTAVK------HTTALTSNICLPHESGLSMTQANEVKSSTNSDSPFIGSAFSPAPSGHKIPLYDVAHVRAGDKGNDLNFSMIPHFPPDIVRLKSIITPQWVKKVVSALLNSSPFPDMDAINERDKWVNEN-VKVEIYEVKGIRSLNVVVRDILDGGVNCSRRIDRHGKTISDLILCQQVL 637

HSP 3 Score: 181.8 bits (460), Expect = 2.822e-44
Identity = 99/165 (60.00%), Postives = 116/165 (70.30%), Query Frame = 3

Query:  183 ISMEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGASMRI*KHRFKF*VVCQISPNALC*CSKLCLIFSFHTEHIDSFLDSGSGQCSRKGF 677
            ++ME Q  + I +C+IK R N Q+R+DKVYIGCGAGFGGDRP AA KLL RVKELNYIVLECLAERTLAERYQ M SGGDGYDS IS+WM LLLPLAV+RGTCIITNMGA   +  H  +  V+ +I+       S L L  S    H  S  ++GSG    K +
Sbjct:    1 MTMEIQEVDGIRNCVIKLRENSQKRRDKVYIGCGAGFGGDRPFAALKLLQRVKELNYIVLECLAERTLAERYQVMVSGGDGYDSRISDWMRLLLPLAVERGTCIITNMGA---MDPHGAQEKVI-EIA-------SSLGLSVSVAVAHEISVANTGSGSSHEKSY 154

HSP 4 Score: 166.777 bits (421), Expect = 2.007e-39
Identity = 81/104 (77.88%), Postives = 88/104 (84.62%), Query Frame = 2

Query: 2018 GWKGWGEISYGGYECVKRAKAAELLVRSWMEEAFPGVSSCVLSYIIGLDSLKATSIGHHLSTWRASEDIRLRMDGLFQEKKHAQQLAKEFTALYTNGPAGGGGI 2329
            GWKGWGEISYGGYECVKRAKAAE LVRSWMEE  PGVSS V+SYIIGLDSLKATS+  + S+ R   DIRLRMDGLF+ K+HA    +EFTALYTNGPAGGGGI
Sbjct:  340 GWKGWGEISYGGYECVKRAKAAEFLVRSWMEEVIPGVSSHVVSYIIGLDSLKATSLSDNASS-RMVSDIRLRMDGLFKLKEHAVHFVREFTALYTNGPAGGGGI 442

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: V7ANY4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G096000g PE=4 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.932e-88
Identity = 138/178 (77.53%), Postives = 160/178 (89.89%), Query Frame = 1

Query: 1171 GVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIP 1704
            G+STYLGAAPIV CLE+YQPNV+ITSR+ADAALFLAPMVYELGWNWD+LE LAQGSLAGHLLECGCQLTGGYFMHP D+ R++SF  LLDLSLP+AEI   G++CV KAEGSGG+LN  TCAEQLLYEVGDP+AY+TPDVV++F+ V+F PLS S+VLC+GAKPS   VPD+LLQL+P
Sbjct:  164 GISTYLGAAPIVRCLEKYQPNVIITSRIADAALFLAPMVYELGWNWDELEHLAQGSLAGHLLECGCQLTGGYFMHPGDQYRDMSFLQLLDLSLPFAEICFDGQVCVAKAEGSGGVLNLSTCAEQLLYEVGDPAAYVTPDVVINFQDVSFSPLSSSRVLCLGAKPSTVSVPDQLLQLVP 341

HSP 2 Score: 185.267 bits (469), Expect = 2.479e-47
Identity = 86/113 (76.11%), Postives = 97/113 (85.84%), Query Frame = 3

Query:  174 ESKISMEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 512
            E  + ME Q  EEIH+ LIK R NPQRR+DKVY+GCGAGFGGDRP+AA KLL RV+ELNY+VLECLAERTL +RYQ M SGGDGYDS IS WMS+LLPLA++RGTCIITNMGA
Sbjct:    3 EEVVVMEPQDEEEIHNSLIKLRSNPQRRRDKVYVGCGAGFGGDRPLAALKLLQRVQELNYLVLECLAERTLVDRYQIMMSGGDGYDSQISSWMSMLLPLALERGTCIITNMGA 115

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Match: V7AN86_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G096000g PE=4 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.236e-88
Identity = 138/178 (77.53%), Postives = 160/178 (89.89%), Query Frame = 1

Query: 1171 GVSTYLGAAPIVACLERYQPNVLITSRVADAALFLAPMVYELGWNWDDLELLAQGSLAGHLLECGCQLTGGYFMHPADKNRNLSFPNLLDLSLPYAEISSSGEICVMKAEGSGGILNFGTCAEQLLYEVGDPSAYITPDVVVDFRGVTFQPLSRSKVLCIGAKPSAHPVPDKLLQLIP 1704
            G+STYLGAAPIV CLE+YQPNV+ITSR+ADAALFLAPMVYELGWNWD+LE LAQGSLAGHLLECGCQLTGGYFMHP D+ R++SF  LLDLSLP+AEI   G++CV KAEGSGG+LN  TCAEQLLYEVGDP+AY+TPDVV++F+ V+F PLS S+VLC+GAKPS   VPD+LLQL+P
Sbjct:  164 GISTYLGAAPIVRCLEKYQPNVIITSRIADAALFLAPMVYELGWNWDELEHLAQGSLAGHLLECGCQLTGGYFMHPGDQYRDMSFLQLLDLSLPFAEICFDGQVCVAKAEGSGGVLNLSTCAEQLLYEVGDPAAYVTPDVVINFQDVSFSPLSSSRVLCLGAKPSTVSVPDQLLQLVP 341

HSP 2 Score: 185.267 bits (469), Expect = 2.782e-47
Identity = 86/113 (76.11%), Postives = 97/113 (85.84%), Query Frame = 3

Query:  174 ESKISMEKQTYEEIHDCLIKPRINPQRRKDKVYIGCGAGFGGDRPMAAKKLLNRVKELNYIVLECLAERTLAERYQAMASGGDGYDSNISEWMSLLLPLAVDRGTCIITNMGA 512
            E  + ME Q  EEIH+ LIK R NPQRR+DKVY+GCGAGFGGDRP+AA KLL RV+ELNY+VLECLAERTL +RYQ M SGGDGYDS IS WMS+LLPLA++RGTCIITNMGA
Sbjct:    3 EEVVVMEPQDEEEIHNSLIKLRSNPQRRRDKVYVGCGAGFGGDRPLAALKLLQRVQELNYLVLECLAERTLVDRYQIMMSGGDGYDSQISSWMSMLLPLALERGTCIITNMGA 115

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0094928 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N994_GOSAR	2.116e-112	82.25	Septin spn6 OS=Gossypium arboreum GN=F383_12164 PE...	[more]
A0A0D2PSL8_GOSRA	7.368e-112	96.22	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PZY3_GOSRA	1.103e-111	96.22	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QRI4_GOSRA	1.241e-110	95.19	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2NAF2_GOSRA	3.343e-110	95.19	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DT93_THECC	1.573e-104	89.19	Uncharacterized protein isoform 3 OS=Theobroma cac...	[more]
A0A061DUE4_THECC	4.590e-102	90.56	Uncharacterized protein isoform 1 OS=Theobroma cac...	[more]
M5X703_PRUPE	1.461e-88	75.38	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
V7ANY4_PHAVU	3.932e-88	77.53	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
V7AN86_PHAVU	4.236e-88	77.53	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010839	Acyclic terpene utilisation	PFAM	PF07287	DUF1446	coord: 59..226 e-value: 2.2E-58 score: 197.5
None	No IPR available	PANTHER	PTHR13943	HRAS-LIKE SUPPRESSOR - RELATED	coord: 53..236
None	No IPR available	PANTHER	PTHR13943:SF48	SUBFAMILY NOT NAMED	coord: 53..236
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..245
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094928 ID=g.barbadense_cottongen_reftransV1_0094928; Name=g.barbadense_cottongen_reftransV1_0094928; organism=Gossypium barbadense; type=contig; length=3578bp
CCTGCCTGATCTTATTGTATTTATTTAGTTATCATCATAATTATTAAGAA
CCCAGACTTCGTTTATCAGATTCTAATCAAGCAACTGATCGGTTTGATTA
CAGGGGAGAGCTATAATTTAGATTCCGGAGAAGAAAACTCGGCGGCGAGA
CAATTTCTCAACTCTTTTACATTGAATCTAAGATATCAATGGAAAAACAG
ACCTACGAAGAAATTCATGACTGCCTGATCAAGCCGAGAATCAATCCTCA
AAGAAGAAAAGACAAAGTTTATATTGGCTGTGGAGCTGGGTTCGGTGGTG
ACCGGCCAATGGCAGCTAAAAAATTGCTTAACAGAGTCAAAGAGCTGAAT
TATATTGTTCTTGAATGTTTAGCAGAACGTACTCTTGCAGAACGATACCA
GGCTATGGCGTCCGGCGGTGATGGCTATGATTCTAATATTTCAGAATGGA
TGTCTCTGCTACTACCTTTGGCTGTGGATAGGGGAACTTGTATAATTACC
AACATGGGTGCAAGTATGAGAATTTGAAAACATCGTTTCAAATTTTGAGT
TGTCTGCCAAATTTCACCAAATGCTTTGTGCTGATGTTCAAAGTTGTGTT
TGATCTTTTCTTTTCATACTGAGCATATTGATTCTTTCCTGGATAGTGGA
TCCGGTCAGTGCTCGAGAAAAGGTTTTAGAAGTTGCCAGCAGTCTTGGGA
TTCGTTTGTCTGTTGCTGTGGCTCATGAGGTCTTTGTTAATGAATCGGGT
ATGCTCATCAAGTTAGCCCCTTTTAAATTTAAGTTAATCATGTATGAGAA
TTTTGCTGGTGAGTTCAGATAACTGACAATTGTATGATCTTCATTTTAGA
AACTATAGTCAGTATATTGTTGTGTGCAATTCAGAATTTTCATTCATTGT
GTTTAGCAATATTCTTGGACTCCAAATGAGAAATATTTTTAAATATTCAG
GTTCAGGATCCTTGCCTGAGAAGCTGGTTAACATGGAAGGTGTAAGAATC
TGGTACTCCTTTGCATGTACCGTTCATTGGCCTTTTGTATCTTCTTTTTG
GTTTCACATAAAAGGATTAATGATCTGGTTTTCATCTGCATGTACGTTTT
TTCATCTTTAGTTATGAAATTTCATGAGAAATGCAAACTCTTGAGCTCTA
TCTTGTTTAATTCTTTGAAGGGTGTTAGCACATATCTGGGAGCAGCCCCA
ATAGTCGCATGTCTAGAGAGATACCAACCAAATGTTTTAATTACTTCAAG
GGTCGCTGATGCCGCACTATTCTTAGCACCAATGGTTTACGAATTGGGCT
GGAATTGGGATGACTTGGAGCTATTAGCACAGGGATCTCTGGCAGGACAC
CTTCTAGAGTGTGGTTGTCAACTCACAGGGGGATACTTCATGCATCCAGC
GGACAAGAACCGAAACTTGTCTTTCCCAAATCTCCTGGATCTATCACTGC
CATATGCTGAAATTTCATCAAGTGGGGAAATATGTGTCATGAAAGCAGAA
GGTAGTGGCGGGATTTTAAATTTCGGCACTTGTGCTGAACAACTACTTTA
TGAGGTTGGAGATCCAAGTGCTTACATTACACCTGATGTTGTAGTTGATT
TTCGGGGTGTTACATTTCAGCCATTATCTAGATCTAAAGTTCTCTGTATT
GGTGCAAAGCCATCTGCTCATCCTGTTCCTGATAAACTTTTGCAGTTGAT
TCCGAAGGTAACCTTCTATCCTGAAGGTAATATTTAGCTTTAAGGACTGT
TCTTTTTTCTTAGCTTCAGTCCTGCAGCAGATGGCTTGTAGGTATTTCAA
CAAAGCGTCTATTTCCATATTTCTGAATAAAGCATGTATTCTCTCTTCAC
TCTATGATTGAGGGAACCCCGTTGTTACCTCGTTGCAGCCCCTGTCCCCC
GCCTCCCCTCCCTCTAGTTATCTCAATTATTTTCTAGTCACAGATATTAC
TTCATTGGGTCTAATGTCTTCTAAGGTTGTCTCTATGCATTCTAATTTAT
CTTGTTTCCAGCACCGTGGATGGAAAGGATGGGGTGAGATATCATATGGA
GGATATGAATGTGTCAAACGTGCAAAAGCTGCTGAACTTCTTGTTAGGTC
ATGGATGGAAGAGGCATTTCCTGGTGTCAGTTCCTGTGTTCTTTCTTATA
TAATTGGACTGGATAGCTTGAAAGCTACCAGCATTGGTCACCATCTATCG
ACATGGAGAGCCAGTGAAGACATTCGGCTACGCATGGATGGACTATTCCA
GGAGAAGAAACACGCACAGCAACTTGCTAAAGAGTTTACTGCATTATATA
CAAATGGACCGGCCGGCGGTGGTGGTATCAGGTATATTTCCTCCTAATTT
TATATCTATGGTATGTACCATATATATGTACGAAAAACTAAATGCCAATA
GTGAATGTGTAAAGTTCTCTGGTTCTGGATAATGGCAATGGTTCATATGC
TGTATTCATGTACGCATGGATGGCGAGTTTCTTCTTTGGCTCCATGATCT
TTGTGCCTAACCTATGATGTTTATGTTTATCATCTCATGCAGCACTGGTG
TCAAGAAGGAAATTTTTCTGGAAAAACAGTTGGTACTCTCCGTTCCCTCT
TCTTCCTTTAAATAAATTCTTGGTCCTTGAAATCCTTAATGTTGAACTTG
AAACTGTAATCAGGCCAACATGTTGTTGTTCGAACTATTGAATTCATGTT
TATGAATGTGCTTATGCAAAGTAATCTGTTTCCTTTCTACTTAGATCAGT
CGAGAACATGTTTTCTGGCGGATAGGGGCAAAGCAAACAGAAGTCAGTGA
ACATGTCTTTGCAGATGTTACAAAGGCCTGCATTTCAGCTGAACTGGCAT
TGCCACCATTTCAACTAGAAGATATGCAGAACTCTTGCCTAGAATATGGT
TTGTCATCGGAAATCAGCCTCTCAGCAGCTCAGTCTGGTCAAAAGATTCC
ACTCTATAATATAGCCCACAGTAGGGCTGGAGATAAAGGAAACGACTTAA
ACTTCTCCGTCATCCCACACTGTCCGCAGAACTTTGAGATGCTGAAGCTT
ATCATAACACCCCAGTGGGTTAAGAGTGTGATCTCAGTCCTTCCGGATGC
ATCTCCAAAGGCCATTGATAAGACAAAACAATTGGTGAAGGAAGATAAAG
TACAGGTGGAAATCTATGAAGTCCATGGAATTCAGTCTTTAAATGTGGTG
GTTCGTAACATTCTCGATGGTGGTGTCAATTGCTCTCGAAGGATCGATCG
CCATGGAAAGTGCATCTCGGATCTTATCTTGTGTCAACATGTGTTACCTA
AGTTTTAATTACAATTCAACTTTAAAATTTTTTAATAATCGAAAATTTGT
CTGATATAATATAATATTACACTACATGTTCATATGTCAGCTTATGGGGA
TTGGGTATTATTTCCTTCTTATATTAAATGCGAATGAAGCTTATTTGAGA
GTAAGAATATAGGTATTAAAACAAAAATGACGAAAGTTGAAACACTGAAA
GATAATGCACTTCAGTGGATTCAAACCCACATCCTATTGTATTAGTAACA
ATATTTATTTCAATCGAGTTAAGACTTA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR010839	AtuA

Search form

g.barbadense_cottongen_reftransV1_0094928, g.barbadense_cottongen_reftransV1_0094928 (contig) Gossypium barbadense

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