g.barbadense_cottongen_reftransV1_0094670, g.barbadense_cottongen_reftransV1_0094670 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094670
Unique Nameg.barbadense_cottongen_reftransV1_0094670
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt12chromosomeg.barbadense_cottongen_reftransV1_0094670:1..2299 .
Dt12:14493013..14496366 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0D2RBI2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G076600 PE=4 SV=1)

HSP 1 Score: 792.727 bits (2046), Expect = 0.000e+0
Identity = 418/421 (99.29%), Postives = 419/421 (99.52%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHIRMSFLSSCFTCHGF 1871
            MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTV NLMAGSPFSTGVLMADGVSVHYLGCRAAAAAGDVDGDQSCMVQSDSNVARSAIIPGWSSDLVSESSLPSSQDEKLDEIKDAEMMLCRVASRRDMATQMSPDNSSSHSSTR RSSFGHSPPPILPLPAVDNNDHPSKLD+REVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHIRMSFLSSCFTCHGF
Sbjct:    1 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVTNLMAGSPFSTGVLMADGVSVHYLGCRAAAAAGDVDGDQSCMVQSDSNVARSAIIPGWSSDLVSESSLPSSQDEKLDEIKDAEMMLCRVASRRDMATQMSPDNSSSHSSTRERSSFGHSPPPILPLPAVDNNDHPSKLDIREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHIRMSFLSSCFTCHGF 421          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A061DGY7_THECC (Remorin family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_000622 PE=4 SV=1)

HSP 1 Score: 664.84 bits (1714), Expect = 0.000e+0
Identity = 355/421 (84.32%), Postives = 378/421 (89.79%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHIRMSFLSSCFTCHGF 1871
            MKKGSVSLSHL TFPSPG SDYRDNG VV+QKGWSSERV   ANS G SRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKN NY LQRRPKSKSGPIVPPGIAFYSN SPSM LLDGGGSG+VRNLMAGSPFSTGVLMADGVSVHY GCR + A GD DG+QSCMVQ+DSNVARSAIIPGW SDLVSESSLPSSQDEKLDEIKDAE M+ RV SRRDMATQMSP+ SSSHSS R RSSF HSPPPILPLPA++N+DHPSKLD+REVQIDKRAT+TN  KRHGSRRIKKG PDFE FY+N+   SALSLD++EAATSISKL REEAKI+AWENLQRAKAEAAIRKLEMKLEKKRSASMDKIL KLR AQ+KAQEMRSS+  KE+EQIPKTS K +FF+IRMS   SCFTCH +
Sbjct:    1 MKKGSVSLSHLATFPSPGASDYRDNGVVVAQKGWSSERVPHPANSTGCSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNANYQLQRRPKSKSGPIVPPGIAFYSNYSPSMQLLDGGGSGSVRNLMAGSPFSTGVLMADGVSVHYGGCRGSVAGGDGDGEQSCMVQNDSNVARSAIIPGW-SDLVSESSLPSSQDEKLDEIKDAETMISRVVSRRDMATQMSPEGSSSHSSPRERSSFCHSPPPILPLPAMENSDHPSKLDIREVQIDKRATMTNWPKRHGSRRIKKGVPDFEDFYQNNTAGSALSLDVSEAATSISKLHREEAKINAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILSKLRMAQMKAQEMRSSMPAKENEQIPKTSQKVSFFNIRMSSFRSCFTCHAY 420          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0D2SWT0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G076600 PE=4 SV=1)

HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 352/360 (97.78%), Postives = 356/360 (98.89%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEK 1688
            MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTV NLMAGSPFSTGVLMADGVSVHYLGCRAAAAAGDVDGDQSCMVQSDSNVARSAIIPGWSSDLVSESSLPSSQDEKLDEIKDAEMMLCRVASRRDMATQMSPDNSSSHSSTR RSSFGHSPPPILPLPAVDNNDHPSKLD+REVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLE + ++
Sbjct:    1 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVTNLMAGSPFSTGVLMADGVSVHYLGCRAAAAAGDVDGDQSCMVQSDSNVARSAIIPGWSSDLVSESSLPSSQDEKLDEIKDAEMMLCRVASRRDMATQMSPDNSSSHSSTRERSSFGHSPPPILPLPAVDNNDHPSKLDIREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEKRRDQ 360          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A061DHX3_THECC (Remorin family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_000622 PE=4 SV=1)

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 343/401 (85.54%), Postives = 363/401 (90.52%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK 1811
            MKKGSVSLSHL TFPSPG SDYRDNG VV+QKGWSSERV   ANS G SRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKN NY LQRRPKSKSGPIVPPGIAFYSN SPSM LLDGGGSG+VRNLMAGSPFSTGVLMADGVSVHY GCR + A GD DG+QSCMVQ+DSNVARSAIIPGW SDLVSESSLPSSQDEKLDEIKDAE M+ RV SRRDMATQMSP+ SSSHSS R RSSF HSPPPILPLPA++N+DHPSKLD+REVQIDKRAT+TN  KRHGSRRIKKG PDFE FY+N+   SALSLD++EAATSISKL REEAKI+AWENLQRAKAEAAIRKLEMKLEKKRSASMDKIL KLR AQ+KAQEMRSS+  KE+EQIPKTS K
Sbjct:    1 MKKGSVSLSHLATFPSPGASDYRDNGVVVAQKGWSSERVPHPANSTGCSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNANYQLQRRPKSKSGPIVPPGIAFYSNYSPSMQLLDGGGSGSVRNLMAGSPFSTGVLMADGVSVHYGGCRGSVAGGDGDGEQSCMVQNDSNVARSAIIPGW-SDLVSESSLPSSQDEKLDEIKDAETMISRVVSRRDMATQMSPEGSSSHSSPRERSSFCHSPPPILPLPAMENSDHPSKLDIREVQIDKRATMTNWPKRHGSRRIKKGVPDFEDFYQNNTAGSALSLDVSEAATSISKLHREEAKINAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILSKLRMAQMKAQEMRSSMPAKENEQIPKTSQK 400          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: B9SC72_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1408470 PE=4 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.019e-131
Identity = 239/421 (56.77%), Postives = 289/421 (68.65%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVN-YHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFF--HIRMSFLSSCFTC 1862
            M+K   S   LGTFPSPG  ++++       KGW SERV    + +G+SRRHISA  LTPFYSGRT+PSKWEDAERWICSPVLGYGV+K     H QRRPKSKSGPIV PGIA+YSNCSPSM ++D   S +VRN +A SPFSTGVLM  G+  HY G       G + G         + VARS   PGWS      SS  S  + K+D I DAE  + RV SRRDMATQMSP+ S+  S     SS    P        V+ +DHP+KL++REVQ+DKRAT+ +R+ RHGSRR KKG PD +   +N++ +     +++EA++  SKLQREEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS SMDKIL KLRTAQ+KAQEMRSSI   +D Q PK S K +FF  H R++ +SSCFTC
Sbjct:    1 MRKNLNSSLSLGTFPSPGAGNFQE-------KGWCSERVP---HPSGSSRRHISA--LTPFYSGRTMPSKWEDAERWICSPVLGYGVTKYSQCLHHQRRPKSKSGPIVSPGIAYYSNCSPSMQVVD---SSSVRNFIANSPFSTGVLMPKGLVPHYNG-------GGIGGQ--------TIVARSVSGPGWSDLPSESSSPSSQDE-KVDGINDAENTVTRVISRRDMATQMSPEGSTCSSPRERSSSPPSIP-------PVEQSDHPAKLEIREVQVDKRATLVSRTTRHGSRRSKKGLPDVQDINQNASDSRISLWNVSEASSEFSKLQREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSLSMDKILNKLRTAQIKAQEMRSSIPTTQDPQTPKISHKASFFHRHTRLTSVSSCFTC 383          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: B9H6G4_POPTR (Remorin family protein OS=Populus trichocarpa GN=POPTR_0005s18170g PE=4 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 3.343e-125
Identity = 234/424 (55.19%), Postives = 286/424 (67.45%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPI-VPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFH--IRMSFLSSCFTCHGF 1871
            MK+  +S   LG FPSPGG+ Y++N      KGWSSER+     S+G+ RRHISA  LTPFYSGR LPSKWEDAERWICSPVLGYGV+K+   H  RR KSKSGPI +PPGI +Y NCSPSM ++DGG     RN M  SPFSTGVLM +GV  H  G       G V+   S + +SD               L SE S  SSQDE+ + + D    + R+ SRRDMATQMSP+ S+  S     S    SPP   P+     +DHP+KL++REVQ+DKRATV   SKR GSRRIK+G+PD E F  N+A   + S DI+E  +  SKLQREEAKI+AWENLQ+A+AEAAIRKLEMKLEKKRS+SMDKI+ KLR AQ+KA+EMRSS+S ++D+Q+ + S K   FH   R++ L SCFTCH F
Sbjct:    1 MKQNLISSQSLGAFPSPGGARYQEN------KGWSSERIPHP--SSGSGRRHISA--LTPFYSGRALPSKWEDAERWICSPVLGYGVAKSSQCHPLRRAKSKSGPINLPPGIGYYHNCSPSMGVIDGG---IGRNFMVNSPFSTGVLMPNGVGAHCSGSGGGGGQGHVERLASALSRSD---------------LASEPSSSSSQDERPEGVDDGNNTVDRIISRRDMATQMSPEGSTHSSCRGRSS----SPPSTDPV-LEPQSDHPAKLEIREVQVDKRATVIRWSKRPGSRRIKRGQPDVEEFNPNAADAHSSSWDISEEVSDFSKLQREEAKITAWENLQKARAEAAIRKLEMKLEKKRSSSMDKIMNKLRIAQMKAEEMRSSMSIRQDQQVSQKSHKIKLFHKRARLTSLGSCFTCHAF 391          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A067GUX9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014969mg PE=4 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 2.051e-121
Identity = 237/423 (56.03%), Postives = 284/423 (67.14%), Query Frame = 3
Query:  636 HLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGV---SKN-VNYHLQRRPKSKSGPIVPPGIAFYSNC-SPS--MNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAI--IPG--WXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHIR--MSFLSSCFTCH 1865
            H  TFPSPG           + KGWSSERV    +S   SRRHISA+SLTPFYSGR LPSKWEDAERWICSPV GYG+   +KN ++   QRRPKSKSGPIVPP    +++  SPS  M +LDGG    V+N +AGSPFSTGVL+AD +S ++ G             Q  ++ + S  ARS    +PG  WS     +SS  S  + KLD+I DAE ++ RV SRRDMATQMSP++S++ S          S  P +   A   NDHP+KL+VREVQIDK +T  + SKRH SRRIK G PD + FY+N   T A SLD++E A SISKLQREEAKI+AWENLQRAKAEAAIRKLEMKLEK+RS S DKIL KL+ AQ+KAQEMR SIS K+ +Q+PKT+ K  FFH    MS   SCFTCH
Sbjct:   27 HSDTFPSPG-----------APKGWSSERVPHPTSS---SRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGG---RVKNFVAGSPFSTGVLVADRISGNFYG-------------QGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDE-KLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKS-----SFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTAHKAAFFHKHGPMSSFRSCFTCH 413          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: V4SK02_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025727mg PE=4 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 5.240e-121
Identity = 236/423 (55.79%), Postives = 284/423 (67.14%), Query Frame = 3
Query:  636 HLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGV---SKN-VNYHLQRRPKSKSGPIVPPGIAFYSNC-SPS--MNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAI--IPG--WXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHIR--MSFLSSCFTCH 1865
            H  TFPSPG           + +GWSSERV    +S   SRRHISA+SLTPFYSGR LPSKWEDAERWICSPV GYG+   +KN ++   QRRPKSKSGPIVPP    +++  SPS  M +LDGG    V+N +AGSPFSTGVL+AD +S ++ G             Q  ++ + S  ARS    +PG  WS     +SS  S  + KLD+I DAE ++ RV SRRDMATQMSP++S++ S          S  P +   A   NDHP+KL+VREVQIDK +T  + SKRH SRRIK G PD + FY+N   T A SLD++E A SISKLQREEAKI+AWENLQRAKAEAAIRKLEMKLEK+RS S DKIL KL+ AQ+KAQEMR SIS K+ +Q+PKT+ K  FFH    MS   SCFTCH
Sbjct:   24 HSDTFPSPG-----------APRGWSSERVPHPTSS---SRRHISAASLTPFYSGRALPSKWEDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPSTGMQVLDGG---RVKNFVAGSPFSTGVLVADRISGNFYG-------------QGFLLHNGSYAARSRTSNVPGSGWSDLASDDSSPSSQDE-KLDDIPDAEAVVSRVVSRRDMATQMSPESSTNSSPRGKS-----SFSPAVRSVAELQNDHPAKLEVREVQIDKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEMKLEKERSYSTDKILNKLKLAQMKAQEMRISISAKQGQQLPKTARKAAFFHKHALMSSFRSCFTCH 410          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: F6H4K2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00610 PE=4 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 1.055e-115
Identity = 220/422 (52.13%), Postives = 277/422 (65.64%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMA-GSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFF--HIRMSFLSSCFTCH 1865
            MKK +V+  +LG+FPSPG S+Y D    V  KGWSSERV  S NS    RR+I  S+L PF SGR LPSKWEDAERWI SPV GY V+K+     QRRPKSKSGP+  PG+A+  N SP+M + DGGG   VRN M   SPFSTGV++A+G+S+HY         G  +G Q   V ++ ++ RS  IPGWS  L   SS  S  + KL   KDAE M+  V SRRD+ATQMSPD+++  S       F   P P+LP   ++   H  K +VR+VQ+DK  T+   SK+HG++   +  PD E   +N+A   A S DIAE + +I KL+REEAKI+AWENLQ+AKAEAAI+KLEMKLEKKR+ASMDKIL KLR A++KA+EMRSSIS  +  Q  KTS K   F  +++   L  CFTCH
Sbjct:    1 MKKSAVTSHNLGSFPSPGTSNYGDGSGGVP-KGWSSERVPPSVNSG---RRYIGGSTLMPFNSGRALPSKWEDAERWISSPVSGYSVNKSSLAQPQRRPKSKSGPLGLPGVAYNPNYSPAMPVFDGGG---VRNFMGPSSPFSTGVMVAEGLSLHY---------GAGNGGQPHPVPNEHSMERSISIPGWSDFLSESSSPNSQDE-KLGGSKDAETMVSPVVSRRDIATQMSPDSNTHSSPKDR---FSFPPSPLLP--TLEQQTHSVKSEVRDVQVDKGVTMIRWSKKHGAKTTMRAPPDVEETDKNAAEAQASSWDIAEPSKNILKLKREEAKITAWENLQKAKAEAAIQKLEMKLEKKRAASMDKILSKLRMAEMKAEEMRSSISESQANQDSKTSHKVASFRKNVQKGSLGGCFTCH 400          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A068U2E5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039894001 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 1.072e-101
Identity = 212/420 (50.48%), Postives = 279/420 (66.43%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAV--DNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHIRMSFLSSCFTC 1862
            MKK S S+ + G + SPG  +Y DN      KGWSSERV    N   NSRRH+SA++L PF SGRTLPSKW+DAERWI SPV GYGV K  N   QRRPKSKSGP+ PPG+ +  N SP+  +L+GG   T    MAGSP +TGVL+ DG+S+HY            +G +S  V ++  +A +A  PG  SD ++E S+PSSQD +L  + +AE  + RV SRRD+ATQMSP+  S++SS +  SSF   P   LP+PA    +N + +K+++R+VQ+DK AT+T +SK+ G+RR+++   DF+          A   DI+ AA ++SK +REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRSASMDKIL KLR AQ KAQ+MR+S + K   Q   ++  F   +++ S L  CF C
Sbjct:    1 MKKSSGSIGNSGAYTSPGTPEYGDNYGRGIPKGWSSERVPLPTN---NSRRHVSAAALMPFNSGRTLPSKWDDAERWITSPVSGYGVCKTSNVQPQRRPKSKSGPLGPPGLMYMPNYSPTAPVLEGGSGST---FMAGSPLTTGVLVPDGLSIHY---------ATGNGVKSNSVFAERAIAHAATAPG-LSDFLNECSIPSSQDHELGYL-EAERGVSRVISRRDVATQMSPEG-STYSSPKGNSSFSAFP---LPIPAAVEQHNYNSAKVEIRDVQVDKGATITRQSKKLGARRMRRKSSDFKEL--------ASPWDISGAAKTLSKSRREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSASMDKILNKLRAAQTKAQDMRNSNTDKHAHQSRISTKSFFRKYMKTSPLIECFFC 391          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RBI2_GOSRA0.000e+099.29Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DGY7_THECC0.000e+084.32Remorin family protein, putative isoform 1 OS=Theo... [more]
A0A0D2SWT0_GOSRA0.000e+097.78Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DHX3_THECC0.000e+085.54Remorin family protein, putative isoform 2 OS=Theo... [more]
B9SC72_RICCO1.019e-13156.77DNA binding protein, putative OS=Ricinus communis ... [more]
B9H6G4_POPTR3.343e-12555.19Remorin family protein OS=Populus trichocarpa GN=P... [more]
A0A067GUX9_CITSI2.051e-12156.03Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4SK02_9ROSI5.240e-12155.79Uncharacterized protein OS=Citrus clementina GN=CI... [more]
F6H4K2_VITVI1.055e-11552.13Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A068U2E5_COFCA1.072e-10150.48Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 344..364
NoneNo IPR availablePANTHERPTHR31471:SF2SUBFAMILY NOT NAMEDcoord: 1..419
NoneNo IPR availablePANTHERPTHR31471FAMILY NOT NAMEDcoord: 1..419
IPR005516Remorin, C-terminalPFAMPF03763Remorin_Ccoord: 318..402
e-value: 9.1E-25
score: 86.5

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094670 ID=g.barbadense_cottongen_reftransV1_0094670; Name=g.barbadense_cottongen_reftransV1_0094670; organism=Gossypium barbadense; type=contig; length=2299bp
ATGAAAATGGGAAATGTATGGAAAATGTTCTTAAATTTCAATCTTCAAAG
TCCAAGTATATGGCCTCCTTGTTCTTGTTGGTCACCCATGGATTCTTTTT
CCTTTTTCTTGGGTGGCTTTTCTGTTGTCTTATTCATGTGGTTTTACTTG
AGTATCTGAGATTTCAACTAGTAAAAAAGTAAAAGGACTATGTATAAAAA
CGATGAAAATATCGTTGTCTTTGACAGATACTGCTGATAAAAACGTCTAA
TGCTTACTTCGTCAACATTCTTAGCTTTTGTAATCAATGATTTGAAGCTG
TGTTTTGGCATTTTTCATTCTCAATGGAGCAACCCTTCATGAGGCTTGTC
TTAGATGCAAACAAATCTTTGTACCCAAGGATCGGATAGCTTCCCAAAAT
AATAAATTAATGTAAAAAAAAGGGGTATATAATTAGCTGCAAACAACAGT
AAAAACCAGCTTTCAAACAAATTCTTTCATTGTCTCAATGACCCTTTTAG
ACAGTCTTGCCGGCAAACCGAATAATCAATTTTATCTGTTCAAAGTCTAG
CTCTTTCTGGCACTGGGTGAGGTATCAGGCTAAGACTGTTGGGGGTGATT
GAGAGTGAATGAAGAAAGGGTCTGTTTCTTTGAGCCATCTGGGTACTTTT
CCAAGCCCAGGAGGTTCAGATTACCGTGATAATGGGGCGGTGGTGAGTCA
AAAAGGTTGGAGTTCAGAGCGAGTGGCGCGTTCAGCTAACAGCAATGGCA
ATAGCAGAAGACATATCAGTGCTTCATCTTTGACACCTTTTTACAGTGGA
AGAACTTTGCCTTCCAAATGGGAAGATGCTGAGAGGTGGATTTGTAGCCC
TGTTTTGGGTTATGGTGTTAGCAAGAACGTAAACTATCATCTCCAGAGGC
GGCCAAAGTCTAAAAGTGGGCCGATTGTGCCCCCTGGGATTGCTTTCTAC
TCCAATTGCTCGCCTTCCATGAACTTGCTTGATGGTGGAGGGAGTGGGAC
TGTGAGGAATTTAATGGCAGGGTCTCCATTTTCAACTGGGGTTTTGATGG
CTGATGGGGTTTCCGTTCATTATCTTGGTTGTAGAGCCGCCGCAGCTGCT
GGAGATGTTGACGGCGATCAATCTTGTATGGTGCAGAGTGATAGTAATGT
AGCACGATCCGCTATTATACCTGGATGGTCGTCAGATTTGGTCAGTGAGT
CTTCATTGCCAAGCTCTCAAGATGAAAAACTTGATGAAATCAAGGATGCC
GAAATGATGCTGTGTCGTGTAGCTTCGCGGAGGGATATGGCTACACAAAT
GAGCCCGGACAACAGTAGCAGCCACTCATCTACTAGAGCGAGGTCTTCAT
TCGGCCACTCACCTCCCCCTATCCTTCCTCTTCCTGCTGTGGACAACAAT
GATCATCCTTCTAAACTGGACGTCAGGGAAGTGCAGATAGACAAACGAGC
CACTGTTACTAACCGGTCAAAAAGGCATGGGTCGAGAAGAATCAAGAAAG
GCGAGCCGGATTTTGAAGGCTTCTACCGAAACAGCGCCCCAACTTCTGCT
TTATCTCTGGATATCGCAGAGGCAGCAACAAGCATTTCAAAGTTGCAAAG
AGAGGAAGCAAAGATCAGTGCTTGGGAGAATCTGCAGAGGGCAAAAGCTG
AGGCAGCCATACGTAAACTAGAGATGAAATTAGAAAAGAAGAGATCAGCT
TCAATGGATAAGATCTTGAGGAAGCTGAGAACGGCTCAGGTGAAAGCTCA
AGAAATGAGGAGTTCCATATCAGGCAAAGAGGATGAACAGATTCCCAAGA
CTTCACCGAAGTTTACATTCTTCCATATCCGCATGAGTTTTCTCAGCAGT
TGCTTCACCTGCCATGGTTTCTAGTTTCTTGCAAATCTTATGTCCATATC
CTCAAATCTTTTCCATAAAGTATTAGCTTCCAATGGAGTATTTGTTTCCG
GATTTTTTTCGCTGCTGGTTTCTCGGCTTCCCTACTCTTCCATGTAAATT
ATCTTAAGATTTCTAGATTCGATGGTCCAGGAGACTGCAGATTTCAACTT
CTTGTTCTTAGTGGATGTGATTTTTTTTGGTTCTTTTTTAAAGGAAATGT
CATCTTTTATGCTTTGCAATGTCAACTAACTAGAATAGGTTAGCTTATAT
ATTTGCTTTACTGTCTGATAAGTTAGTGATGAAACATAAAAATACCAGCT
TAATGTATGACAGGGTATACCAACAATTCCATGCAAAATATTTGTAACTT
GCATACCATTGACGGTAAGTTTCAGATGGAAGTGTTTGGTAAAGATAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005516Remorin_C