g.barbadense_cottongen_reftransV1_0094655, g.barbadense_cottongen_reftransV1_0094655 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094655
Unique Name	g.barbadense_cottongen_reftransV1_0094655
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2919

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy Swiss-Prot
Match: YCV6_SCHPO (Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.510e-23
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = -1

Query:  799 RIRTIDAVIITHSHADAIGGLDDLRDWT-NNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQ-EEPFIVHDLQI--TPLPVWHG---------RGYRSLGFRFGDICYISDVSDIPEETYPLL 1170
            +IR +DAVI+TH HADAI G+DDLR+WT   +QP + IY+ ER ++V++++  Y+V+      G +V    F++   ++PF + D+ I  TPLPV HG         + Y  +GFR GD+ YISD + +P  T  L+
Sbjct:   88 KIRYLDAVILTHDHADAINGMDDLREWTLGFLQPSVKIYLTERTYKVIERSFPYMVNAKNATGGGSVPTFDFHVFSPDKPFKLDDIDISVTPLPVHHGVYFIEGKESQTYFCMGFRVGDMSYISDCNYVPPTTKKLM 224

HSP 2 Score: 63.929 bits (154), Expect = 1.882e-9
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = -3

Query: 2186 SEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEP-GNINRRRNTSLLIHYGRPSGR--CNILIDAGKFFYHSALQWFPE 2419
            S+++F+GTG S GIP V CLT     C  C  +  P G  N R NTS+L+     SG    NILID GK FY SAL+ F E
Sbjct:    6 SKLLFMGTGCSSGIPNVCCLTLEKPTCRTCLASLTPEGRKNNRFNTSVLLQVDDGSGDRPKNILIDCGKHFYVSALKHFVE 86

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BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy Swiss-Prot
Match: LIPB_PORGI (Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=lipB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.206e-10
Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = -1

Query:  790 RSLSKKDQWRNVFLIILWYICR---LSCIFVVVTSCICVRIRTIDAVIITHSHADAIGGLDDLRD--WTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNC 1278
            RS  + D+     L+I+    +   + C        +   I ++DAV++TH H D +GGLDDLR   W      ++++Y  +   + ++   +Y+   +   PG  + KL   +  + PF V DL + PL + HGR    LG++ G++ +++D+ DI  E    L +C
Sbjct:   25 RSEDRHDKRTRTSLLIITDAGKRILIDCSPDFRQQALFAGIDSLDAVLLTHEHFDHVGGLDDLRTICWHR----ELAVYAEQNVLDSIRDRLHYVFRKNP-YPGTPLLKL-CEVKPDMPFQVADLTVEPLRIMHGR-LPILGYKIGEMAFLTDMKDIAAEEIECLKSC 185

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BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A0D2UPV9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G064800 PE=4 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 3.636e-81
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = -3

Query: 2177 MVAFSMVPFLGTVRSTPSLTSLAPYKRQISIRISPVSXXXXXXXXXXXFLQACLQSSSATMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2632
            MVAFSMVPFLGTVRSTPSLTSLAPYKRQISIRISPVSFPRNGFFPFRRFLQACLQSSSATMDTRE LPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLI YGRPSGRCNILIDAGKFFYHSALQWFPEFG+
Sbjct:    1 MVAFSMVPFLGTVRSTPSLTSLAPYKRQISIRISPVSFPRNGFFPFRRFLQACLQSSSATMDTREKLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIRYGRPSGRCNILIDAGKFFYHSALQWFPEFGI 152

HSP 2 Score: 262.692 bits (670), Expect = 2.305e-77
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = -1

Query:  787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167
            IRTIDAVIITHSHADAIGGLDDLRDWTNNVQP ISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLL NCE
Sbjct:  152 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPNISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLENCE 278

HSP 3 Score: 45.4394 bits (106), Expect = 2.305e-77
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            C++L  DALRPDRSSSTHFGLPR 
Sbjct:  277 CEILILDALRPDRSSSTHFGLPRA 300

HSP 4 Score: 33.113 bits (74), Expect = 2.305e-77
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKIKPKRTLFTG
Sbjct:  302 EEVRKIKPKRTLFTG 316

HSP 5 Score: 83.1889 bits (204), Expect = 1.196e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL
Sbjct:  314 FTGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 354

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A0B0P9V6_GOSAR (Hydrolase OS=Gossypium arboreum GN=F383_27975 PE=4 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 3.591e-78
Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = -1

Query:  787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167
            IRTIDAVIITHSHADAIGGLDDLRDWTNNVQP ISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNC+
Sbjct:  152 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPNISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCK 278

HSP 2 Score: 47.7506 bits (112), Expect = 3.591e-78
Identity = 20/24 (83.33%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            CK+L  DALRPDRSSSTHFGLPR 
Sbjct:  277 CKILILDALRPDRSSSTHFGLPRA 300

HSP 3 Score: 33.113 bits (74), Expect = 3.591e-78
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKIKPKRTLFTG
Sbjct:  302 EEVRKIKPKRTLFTG 316

HSP 4 Score: 199.519 bits (506), Expect = 6.127e-53
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = -3

Query: 2177 SATMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2461
            SATMDTRE LPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLI YGRPSGRCNILIDAGKFFYHSALQWFPEFG+
Sbjct:   58 SATMDTREKLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIRYGRPSGRCNILIDAGKFFYHSALQWFPEFGI 152

HSP 5 Score: 82.0333 bits (201), Expect = 2.906e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDHEKVSEYLENLMETEGLD+QLSYDGLRIPVSL
Sbjct:  314 FTGMMHLMDHEKVSEYLENLMETEGLDIQLSYDGLRIPVSL 354

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A061GCI0_THECC (Catalytic, putative isoform 2 OS=Theobroma cacao GN=TCM_029044 PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 4.567e-73
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = -1

Query:  787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167
            IRTIDAVIITHSHADAIGGLDDLRDWTNNVQP I IYVA RDFEVMKKTHYYLVDTSVI+PGAAVS+LQFNII EEPFIVHDLQ+TPLPVWHGRGYRSLGFRFG+ICYISDVS+IPEETYPLL NCE
Sbjct:   69 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVANRDFEVMKKTHYYLVDTSVIVPGAAVSELQFNIIHEEPFIVHDLQVTPLPVWHGRGYRSLGFRFGNICYISDVSEIPEETYPLLENCE 195

HSP 2 Score: 45.8246 bits (107), Expect = 4.567e-73
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            C++L  DALRPDRSSSTHFGLPR 
Sbjct:  194 CEILILDALRPDRSSSTHFGLPRA 217

HSP 3 Score: 31.187 bits (69), Expect = 4.567e-73
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKIKPKRTL TG
Sbjct:  219 EEVRKIKPKRTLLTG 233

HSP 4 Score: 91.6633 bits (226), Expect = 6.228e-19
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = -3

Query: 2177 LVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2338
            LVC+KAAE GN NRR NTS+LI   +PSG CNILIDAGKFFYHSAL+WFP FG+
Sbjct:   16 LVCTKAAELGNKNRRLNTSILIRNSKPSGSCNILIDAGKFFYHSALRWFPAFGI 69

HSP 5 Score: 32.3426 bits (72), Expect = 6.228e-19
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = -1

Query: 2461 MGSFRSGGFFKLAFNLV 2511
            MGS +SGGFFKLAFNLV
Sbjct:    1 MGSSQSGGFFKLAFNLV 17

HSP 6 Score: 66.6254 bits (161), Expect = 1.142e-8
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = -3

Query:  215 GMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 331
            GMMHLMDHE V++YL  LME+EGLDVQLSYDGLR+P++L
Sbjct:  233 GMMHLMDHEIVNDYLIKLMESEGLDVQLSYDGLRVPITL 271

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A061GDA0_THECC (Catalytic, putative isoform 1 OS=Theobroma cacao GN=TCM_029044 PE=4 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 5.866e-73
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = -1

Query:  787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167
            IRTIDAVIITHSHADAIGGLDDLRDWTNNVQP I IYVA RDFEVMKKTHYYLVDTSVI+PGAAVS+LQFNII EEPFIVHDLQ+TPLPVWHGRGYRSLGFRFG+ICYISDVS+IPEETYPLL NCE
Sbjct:  152 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVANRDFEVMKKTHYYLVDTSVIVPGAAVSELQFNIIHEEPFIVHDLQVTPLPVWHGRGYRSLGFRFGNICYISDVSEIPEETYPLLENCE 278

HSP 2 Score: 45.4394 bits (106), Expect = 5.866e-73
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            C++L  DALRPDRSSSTHFGLPR 
Sbjct:  277 CEILILDALRPDRSSSTHFGLPRA 300

HSP 3 Score: 30.8018 bits (68), Expect = 5.866e-73
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKIKPKRTL TG
Sbjct:  302 EEVRKIKPKRTLLTG 316

HSP 4 Score: 218.009 bits (554), Expect = 1.580e-59
Identity = 120/152 (78.95%), Postives = 131/152 (86.18%), Query Frame = -3

Query: 2177 MVAFSMVPFLGTVRSTPSLTSLAPYKRQISIRISPVSXXXXXXXXXXXFLQACLQSSSATMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2632
            MVA SMVPFLGTVR TPSLTSL PYKR+ISI+ +P+SFPRNGFFP RRFLQACLQSS A+ D    LPAE SEIIF+GTGTSEGIPRVSCLTDPVKKC VC+KAAE GN NRR NTS+LI   +PSG CNILIDAGKFFYHSAL+WFP FG+
Sbjct:    1 MVALSMVPFLGTVRYTPSLTSLTPYKRKISIQNTPISFPRNGFFPIRRFLQACLQSSFASEDAGARLPAEQSEIIFMGTGTSEGIPRVSCLTDPVKKCPVCTKAAELGNKNRRLNTSILIRNSKPSGSCNILIDAGKFFYHSALRWFPAFGI 152

HSP 5 Score: 67.3958 bits (163), Expect = 1.884e-8
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = -3

Query:  215 GMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 331
            GMMHLMDHE V++YL  LME+EGLDVQLSYDGLR+P++L
Sbjct:  316 GMMHLMDHEIVNDYLIKLMESEGLDVQLSYDGLRVPITL 354

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: U5GI90_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s04460g PE=4 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.235e-72
Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = -1

Query:  787 VTSCICVRIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1191
            VT CI VR+RTIDAVIITHSHADAIGGLDDLRDWTNNVQP I IYVAERDFEVMKKTHYYLVDTSV+ PGAAVS+LQFN+I EEPF+V+DL+ TPLPVWHG GYRSLGFRFG+ICYISDVS+IPEETYPLL +CE
Sbjct:   23 VTICIPVRLRTIDAVIITHSHADAIGGLDDLRDWTNNVQPYIPIYVAERDFEVMKKTHYYLVDTSVVTPGAAVSELQFNLIHEEPFVVNDLKFTPLPVWHGHGYRSLGFRFGNICYISDVSEIPEETYPLLKDCE 157

HSP 2 Score: 46.595 bits (109), Expect = 1.235e-72
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = -3

Query:  605 CKMLSQDALRPDRSSSTHFGLPR 673
            C++L  DALRPDRSSSTHFGLPR
Sbjct:  156 CELLIMDALRPDRSSSTHFGLPR 178

HSP 3 Score: 31.5722 bits (70), Expect = 1.235e-72
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKI+P+RTLFTG
Sbjct:  181 EEVRKIQPRRTLFTG 195

HSP 4 Score: 65.0846 bits (157), Expect = 3.134e-8
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDH+ V+EYL  LMETEGL+V+LSYDGL +PV+L
Sbjct:  193 FTGMMHLMDHDNVNEYLAKLMETEGLNVELSYDGLCVPVTL 233

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A5BN04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006256 PE=4 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.203e-72
Identity = 125/155 (80.65%), Postives = 134/155 (86.45%), Query Frame = -1

Query:  787 VFLIILWYICRL--SCIFVVVTSCICVRIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1245
             FL ++ + C +        VTSCI VRIRTIDAVIITHSHADAIGGLDDLRDWTNNVQP I IYVA RDFEVMKKTHYYLVDTSVIIPGAAVS+LQFNII EEPFIVHDL++ PLPVWHG GYRSLGFRFG+ICYISDVS+IPEETYPLL NCE
Sbjct:  164 AFLTVILFYCFVFHHMYLPFVTSCISVRIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVAPRDFEVMKKTHYYLVDTSVIIPGAAVSELQFNIIHEEPFIVHDLKVIPLPVWHGPGYRSLGFRFGNICYISDVSEIPEETYPLLKNCE 318

HSP 2 Score: 180.259 bits (456), Expect = 8.204e-46
Identity = 94/149 (63.09%), Postives = 113/149 (75.84%), Query Frame = -3

Query: 2174 MVPFLGTVRSTPS-LTSLAPYKRQISIRISPVSXXXXXXXXXXXFLQACLQSSSATMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGLV 2617
            MVPFLG++R+ PS +T  +PYKR+I      +S  R G  PF+R  +ACL+S SA  +TR  LP E SEIIF+GTGTSEGIPRVSCLT+P+K CLVCSKAA+P + NRR NTS+LI Y   SG C ILID GKFFYHSAL+WFP FGL+
Sbjct:    1 MVPFLGSIRANPSSITCFSPYKRRIFFDKPAISVSRYGSSPFQRLFRACLESDSAKGNTRVQLPVEQSEIIFLGTGTSEGIPRVSCLTNPLKTCLVCSKAADPSSKNRRLNTSILIRYPSSSGGCTILIDVGKFFYHSALRWFPTFGLL 149

HSP 3 Score: 71.2478 bits (173), Expect = 1.061e-9
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDHEKVSE LE L +TEGLDVQLSYDGLR+PV+L
Sbjct:  337 FTGMMHLMDHEKVSEDLEKLKKTEGLDVQLSYDGLRVPVTL 377

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A067FCY5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018792mg PE=4 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 8.120e-72
Identity = 116/137 (84.67%), Postives = 124/137 (90.51%), Query Frame = -1

Query:  787 VVVTSCICVRIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1197
            +++TSCI  RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQ  I IYVA RDFEVMKKTHYYLVDTS IIPGAAVS+LQFNII EEPF V DL+ITPLPVWHG GYRSLGFRFG+ICYISDVS+IPEETYP L +CE
Sbjct:   21 LIITSCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCE 157

HSP 2 Score: 46.595 bits (109), Expect = 8.120e-72
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            C++L  DALRPDRSSSTHFGLPR 
Sbjct:  156 CEILIMDALRPDRSSSTHFGLPRA 179

HSP 3 Score: 30.4166 bits (67), Expect = 8.120e-72
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKI+PKRTLF G
Sbjct:  181 EEVRKIQPKRTLFIG 195

HSP 4 Score: 67.781 bits (164), Expect = 3.781e-9
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDHEKV+E L  LMETEGLDVQLSYDGLR+PV L
Sbjct:  193 FIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 233

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A022Q0R9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009104mg PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 2.412e-71
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = -1

Query:  787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167
            IRTIDAVIITHSHADAIGGLDDLRDWTNNVQP + IY AERDFEVMKKTHYY++DTS + PGAAVS LQFNIIQE+PF+VHDLQ TPLPVWHGRGYRSLGFRFG+ICYISDVSDIPE+TYPLL NCE
Sbjct:  151 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPSVPIYTAERDFEVMKKTHYYIIDTSDVTPGAAVSDLQFNIIQEKPFLVHDLQFTPLPVWHGRGYRSLGFRFGNICYISDVSDIPEDTYPLLENCE 277

HSP 2 Score: 45.0542 bits (105), Expect = 2.412e-71
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            C++L  DALRPDRSS+THFGLPR 
Sbjct:  276 CEILIMDALRPDRSSATHFGLPRA 299

HSP 3 Score: 32.3426 bits (72), Expect = 2.412e-71
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKI+PKRTLFTG
Sbjct:  301 EEVRKIQPKRTLFTG 315

HSP 4 Score: 150.599 bits (379), Expect = 7.454e-36
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = -3

Query: 2177 LQACLQSSSA--TMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2485
            +QA L SSSA  ++  +EN+    SEIIFIGTGTSEGIPRVSCLT+P K C VCSKA EPGN NRR NTSLL+ + RPSG+CNILIDAGKFFYHSAL WFP +G+
Sbjct:   49 IQASLHSSSAGDSVGAKENV--GQSEIIFIGTGTSEGIPRVSCLTNPDKTCPVCSKAVEPGNKNRRLNTSLLVRFPRPSGKCNILIDAGKFFYHSALTWFPAYGI 151

HSP 5 Score: 69.3218 bits (168), Expect = 3.606e-9
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDHEK+SE L  L ETEGLD+QLSYDGLR+P+SL
Sbjct:  313 FTGMMHLMDHEKISEDLMKLKETEGLDIQLSYDGLRVPISL 353

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: M0ZR91_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400002494 PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.675e-71
Identity = 112/130 (86.15%), Postives = 121/130 (93.08%), Query Frame = -1

Query:  787 CVRIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1176
            CVRIRTIDAVIITHSHADAIGG+DDLRDWTNNVQP I IYVA RDFEVMKKTHYYL+D S IIPGAAVS+LQFNII+E+PFIVHDL++ PLPVWHG GYRSLGFRFG+ CYISDVSDIPEETYPLL +CE
Sbjct:    9 CVRIRTIDAVIITHSHADAIGGMDDLRDWTNNVQPSIPIYVASRDFEVMKKTHYYLIDKSDIIPGAAVSELQFNIIKEDPFIVHDLKVIPLPVWHGSGYRSLGFRFGNTCYISDVSDIPEETYPLLQDCE 138

HSP 2 Score: 45.4394 bits (106), Expect = 2.675e-71
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            C++L  DALRPDRSS+THFGLPR 
Sbjct:  137 CELLIMDALRPDRSSATHFGLPRA 160

HSP 3 Score: 33.4982 bits (75), Expect = 2.675e-71
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKIKPKRTLFTG
Sbjct:  162 EEVRKIKPKRTLFTG 176

HSP 4 Score: 66.2402 bits (160), Expect = 1.051e-8
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDHE V+E L  L ETEG+DVQLSYDGLR+PVSL
Sbjct:  174 FTGMMHLMDHEVVTERLLKLRETEGIDVQLSYDGLRVPVSL 214

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A0A0LFS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G848240 PE=4 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 7.837e-71
Identity = 110/130 (84.62%), Postives = 123/130 (94.62%), Query Frame = -1

Query:  787 CVRIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1176
               IRTIDAVIITHSHADAIGGLDDLRDWTNNVQP + IYVA+RDFEVM+KTHYYLVDTSVI+PGAAVS+LQFNII EEPF+V+DL++TPLPVWHGRGYRSLGFRFG++CYISDVS+IPEETYPLL +CE
Sbjct:   61 AFEIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPSVPIYVAQRDFEVMQKTHYYLVDTSVILPGAAVSELQFNIIPEEPFVVNDLKVTPLPVWHGRGYRSLGFRFGNVCYISDVSEIPEETYPLLKDCE 190

HSP 2 Score: 45.8246 bits (107), Expect = 7.837e-71
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3

Query:  602 CKMLSQDALRPDRSSSTHFGLPRV 673
            C++L  DALRPDRSSSTHFGLPR 
Sbjct:  189 CEVLILDALRPDRSSSTHFGLPRA 212

HSP 3 Score: 32.3426 bits (72), Expect = 7.837e-71
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  471 EEVRKIKPKRTLFTG 515
            EEVRKI+PKRTLFTG
Sbjct:  214 EEVRKIQPKRTLFTG 228

HSP 4 Score: 88.9669 bits (219), Expect = 8.024e-16
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = -3

Query: 2183 LTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEF 2362
            L +P +  +VC KAAEPGN NRR NTS+L+ Y  PSG  NILID GKFFYHSAL+WFP F
Sbjct:    3 LNNPQEHFMVCFKAAEPGNKNRRLNTSILVRYVGPSGNRNILIDVGKFFYHSALRWFPAF 62

HSP 5 Score: 65.855 bits (159), Expect = 2.225e-8
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = -3

Query:  215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337
            + GMMHLMDHE+V+ YL  L ETEGLD QLSYDGLRIPV+L
Sbjct:  226 FTGMMHLMDHEEVNGYLLKLKETEGLDAQLSYDGLRIPVTL 266

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
YCV6_SCHPO	3.510e-23	40.88	Putative hydrolase C777.06c OS=Schizosaccharomyces...	[more]
LIPB_PORGI	2.206e-10	27.98	Octanoyltransferase OS=Porphyromonas gingivalis (s...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2UPV9_GOSRA	3.636e-81	98.03	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P9V6_GOSAR	3.591e-78	98.43	Hydrolase OS=Gossypium arboreum GN=F383_27975 PE=4...	[more]
A0A061GCI0_THECC	4.567e-73	92.13	Catalytic, putative isoform 2 OS=Theobroma cacao G...	[more]
A0A061GDA0_THECC	5.866e-73	92.13	Catalytic, putative isoform 1 OS=Theobroma cacao G...	[more]
U5GI90_POPTR	1.235e-72	85.93	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A5BN04_VITVI	2.203e-72	80.65	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A067FCY5_CITSI	8.120e-72	84.67	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A022Q0R9_ERYGU	2.412e-71	87.40	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
M0ZR91_SOLTU	2.675e-71	86.15	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
A0A0A0LFS7_CUCSA	7.837e-71	84.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	GENE3D	3.60.15.10		coord: 24..155 e-value: 2.5E-21 score: 75.6
IPR001279	Metallo-beta-lactamase	PFAM	PF12706	Lactamase_B_2	coord: 25..155 e-value: 7.1E-18 score: 64.7
IPR001279	Metallo-beta-lactamase	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 23..155
None	No IPR available	PANTHER	PTHR12553	RIBONUCLEASE Z	coord: 24..155
None	No IPR available	PANTHER	PTHR12553:SF38	SUBFAMILY NOT NAMED	coord: 24..155

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094655 ID=g.barbadense_cottongen_reftransV1_0094655; Name=g.barbadense_cottongen_reftransV1_0094655; organism=Gossypium barbadense; type=contig; length=2919bp
TTTTTTAAACAAAACCCATAGATTGATTTTAGATTGATTCTATATAAATA
GATATAAAATAAAAAATTCTATTTATTCTAAGTATACGGGGATCAGCATA
ATGCTCCCCAAGAATTATGTTATATAATGTTAGCTCATTGAATCTTTTCA
GTTGCAGATTACGGTATAACATGTTCTCACCCAAAAAACAACGGCGGACA
AACATACAAAGCTAGAGTGATACCGGTATACGCAATCCGTCATAGCTGAG
TTGTACATCAAGACCCTCGGTTTCCATCAGGTTTTCCAGGTATTCACTCA
CTTTTTCATGGTCCATCAGATGCATCATGCCTCCATAAAATCACAACAGT
AAAACATGGAAAAGTAAACAAATTACATCCTAATGATGCAATAATAAGTT
GTTGAAACTGTGGAACACTTTAGAAGGATGGAATTGAATTGTAGTGATAT
AGGCCTGAAACTAGAGACTTACCAGTAAAGAGTGTCCTCTTCGGCTTAAT
CTTCCGTACTTCCTCTAAAGCCTGAAGATAAAATAGCAAGTGAAAAAGAG
AGAGTAAGTTTTAGCATTTTAATGTTGTTTACCAGAAGATGTACAAGCAG
ATACCCTTGGAAGTCCAAAATGCGTTGATGAAGATCGATCAGGCCTCAAA
GCATCCTGAGAAAGCATTTTACATATGGACTCAATAAGGTATCCAGAAAT
TGCATTAATGAATTTGGATGTAAATTCTTGTGCATGCATGTCGATGTATA
AGGAGATATAGAGAGAGAGAGGACCAGAATGAGGATTTCACAGTTTCCCA
GAAGAGGATAAGTTTCTTCAGGTATATCACTGACATCACTGATGTAACAA
ATATCACCAAAACGAAAACCTAGTGAGCGATAACCACGGCCGTGCCACAC
TGGTAAAGGGGTAATCTGTAAATCATGAACGATGAAAGGTTCTTCTTGTA
TGATATTAAATTGCAGCTTTGAGACAGCAGCACCAGGTATAATCACACTT
GTATCTACCAAATAATAGTGAGTCTTTTTCATCACCTCAAAATCGCGCTC
GGCAACATAAATTGAGATCTTTGGCTGCACGTTGTTTGTCCAGTCACGTA
GATCATCAAGACCTCCAATTGCATCAGCATGAGAATGTGTAATTATAACC
GCATCAATTGTTCTTATCCTGACACAAATGCAACTAGTTACAACAACGAA
AATACACGACAATCGACATATATACCATAAGATAATCAGAAAAACATTCC
TCCACTGGTCTTTTTTGCTTAATGACCTTTAGGACTTGATAATAAACCTG
AGTTTTACTGAAGTTTACACTTAAGGAAGCATCAAAATGGCCTCCAGAAT
GAGTGAATGCTTGCACCATCTAGAAAAGCATATGTAAAGTACATTTTATA
TTATTATGGTTAATGCTAGTATAGGCATTGAGAAAACATTTACATTTATG
TCTATAACCAACAAATACTAAGATTATTTTGACTGAATTCCAGAACTATA
ACATGAGACCACATTTTGACAGAACACTGAAAAATCAAACTCGCACAAGA
AAACTAGTTGGTTCATCGTGCCTACCGTACATGGTGACGCATTCAATATC
ACATAACACTAAAATCAACATTTCAAATTAAAATAACTGAAGCTACAAAT
GAAACTATACAAATGTTGTATTTCATCCCTTCAAATACCATGGAAAGTCT
GATGATTTCAAGGTGTATGGGACTAAAAAGGGGAGGGTTGAAGTAAAAAT
AAAAAATAAAAAAACATCAAGTCATATGCACTAGTATTCTAAGATACATT
AAACTCAGCCACCAAAGCCCATCGATGATCATAATAATAATCTACAATCA
AATATCAACTCCATGAAGGTGAGAAGAAAAGGCTTAAGACAAGGAAAGAC
TATTCCTATGTTATATCCCAGCCATTAGAGCATGAAAACAATATGGTACA
ACACATTTAGATCATATTCCATCTCAGAGTTACAACAAAAAAAATTCCAA
AACTGCAAATGTAATAGCATCTAAGATAACACAAAGGCTAGAACTTCACC
CCCGCAATGAACATACTCTAAGAGTTAATGGATTGAACACCATGGACCAT
CTAATGACTTAAGAGCTAGACATAATAATTCGAACTTTTAAGAAAGAGAA
ACACCAAAATGCTTTTAGTATTAAACTAACCCAAATTCTGGAAACCATTG
AAGAGCACTGTGGTAGAAGAACTTGCCAGCATCAATTAGAATGTTGCATC
TTCCAGAAGGCCTACCATAATGAATAAGTAAGCTTGTATTACGTCTCCGG
TTTATGTTACCAGGCTCTGCTGCTTTGCTGCAAACCAGGCACTTCTTTAC
AGGGTCAGTCAGGCAGCTAACACGAGGAATGCCTTCGCTAGTTCCTGTCC
CTATAAAAATGATCTCGGAATGTTCTGCAGGTAAATTTTCTCTAGTATCC
ATAGTAGCAGAACTAGATTGAAGGCAAGCTTGAAGAAACCTCCTGAACGG
AAAGAACCCATTCCTTGGAAAAGAAACTGGAGAGATTCGTATTGATATTT
GGCGCTTGTAAGGTGCCAAACTCGTTAAAGAAGGTGTAGATCGAACTGTG
CCCAAAAATGGAACCATTGAGAAAGCTACCATTTTCTTATTACTATATAA
TTTCAACTTCCTTTTCCCTTTCTTGTAAATCTCGAATTTTTTTTTTTTAA
TTCAAAAGCAAATCAGCTTTTATTCCGAAATGAAAGGTGAAAATGTTGGT
TTCTTTCTATTTCTCCACACCTTTTGTTTAGCAGTTTTGGTTTGGAGAGC
ATTGGCTGCCTGAAGAAACGAAGCAAAGCATAGATAGGCCAATGTTAACC
ATATATGGTCAATCCTTTTTTTCTCTTTGCTCTTTCTTACATATATTGAA
AATATAGAGAAATTTGGAC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001279	Metallo-B-lactamas

Search form

g.barbadense_cottongen_reftransV1_0094655, g.barbadense_cottongen_reftransV1_0094655 (contig) Gossypium barbadense

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