g.barbadense_cottongen_reftransV1_0094200, g.barbadense_cottongen_reftransV1_0094200 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094200
Unique Name	g.barbadense_cottongen_reftransV1_0094200
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2606

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At09	chromosome	g.barbadense_cottongen_reftransV1_0094200:4..2606 . At09:9648330..9654324 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.228e-25
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGS+IQAALAEWTGQRTVPNVFIG KHIGGCD+T ALH+EGKL+PLLTEAGAI K+S 
Sbjct:   50 DGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTST 107

HSP 2 Score: 78.9518 bits (193), Expect = 1.631e-15
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            M+L KAK+IVS NPV VFSK+YCPFCV VK LL +LGA+FKA+ELD E
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.222e-23
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = -2

Query:  911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081
            DGS++Q+ALAEWTGQRTVPNVFI GKHIGGCD T+AL+ EGKLVPLLTEAGAI  S+
Sbjct:   50 DGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106

HSP 2 Score: 77.411 bits (189), Expect = 5.700e-15
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MAL KAK+ V++ PVVV+SKSYCPFCV VK+L +QLGA+FKAIELD E
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.641e-23
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = -2

Query:  923 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAI 1081
            DGS+IQ ALAEWTGQRTVPNVFIGGKHIGGCDST A H +G+LVPLLTEAGA+
Sbjct:   50 DGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102

HSP 2 Score: 71.633 bits (174), Expect = 5.115e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MA+ K K++VS+N VVVFSK+YCP+C  VK+LL QLGA +K +ELD E
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.978e-23
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = -2

Query:  923 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAI 1081
            DGSD+Q ALAEWTGQRTVPNVFIGGKHIGGCD T  +H+EGKL+PLLTEAGA+
Sbjct:   50 DGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102

HSP 2 Score: 53.5286 bits (127), Expect = 5.415e-7
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MA+ KA+++VS+N VVVFSK++CP+C  VKQLL QLGA FK IELD E
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.030e-22
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = -2

Query:  923 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAI 1081
            DGS IQ+ LAEWTGQRTVPNVFIGG HIGGCD+T  LHK+GKLVPLLTEAGAI
Sbjct:   50 DGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAI 102

HSP 2 Score: 78.9518 bits (193), Expect = 1.568e-15
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MA+QKAK+IV++  VVVFSK+YCP+CV VK+LLQQLGA FKA+ELD E
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.529e-22
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGS++Q+ALA+WTGQRTVP VFI GKHIGGCD TMA+HK G LVPLLTEAGAI   S+
Sbjct:   76 DGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIATPSL 133

HSP 2 Score: 73.1738 bits (178), Expect = 2.158e-13
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MAL KAK+IV+++PVVVFSK+YCPFC  VK+LL +L AS+KA+ELD E
Sbjct:   27 MALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVE 74

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.340e-20
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = -2

Query:  911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081
            DG +IQ+AL+EWTGQ TVPNVFI G HIGGCD  M  +K+GKLVPLLTEAGAI  +S
Sbjct:   66 DGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNS 122

HSP 2 Score: 67.0106 bits (162), Expect = 2.488e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = -2

Query: 2324 REKKMALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDR 2476
             E ++ + KAK+IVS  PVVVFSK+YC +C  VKQLL QLGA+FK +ELD 
Sbjct:   13 EEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDE 63

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.178e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = -2

Query:  929 GDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAG 1084
             DGS++Q+A  + +G RTVP VFI  K IGGCD+T  LH +GKL+PLL EAG
Sbjct:   47 SDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.585e-11
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = -2

Query:  932 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEA 1081
            +GS +Q  L + TGQ TVPNVFIGGKHIGGC  T+ LH +G+L  +L EA
Sbjct:  123 EGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.887e-10
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = -2

Query:  935 GDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTE 1084
              G  +Q  L   TGQ TVPNVFIGGKHIGGC  T+ LH++G+L  +L+E
Sbjct:  107 AQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A0D2RWD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G031800 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.154e-29
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV
Sbjct:   50 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 107

HSP 2 Score: 99.3673 bits (246), Expect = 1.181e-20
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELD+E
Sbjct:    1 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDKE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: W9SBA6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020532 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.681e-25
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = -2

Query:  911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081
            DG++IQAALAEWTGQRTVPNVFIGGKHIGGCD+TMALHKEGKLVPLLTEAGA+ K+S
Sbjct:   86 DGAEIQAALAEWTGQRTVPNVFIGGKHIGGCDATMALHKEGKLVPLLTEAGALAKAS 142

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A076KWF9_TOBAC (Gluaredoxin OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.801e-25
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = -2

Query:  911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081
            DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKLVPLLTEAGA+ KSS
Sbjct:   50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLVPLLTEAGALAKSS 106

HSP 2 Score: 81.2629 bits (199), Expect = 2.397e-14
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MAL KAK+IVS NPVVVFSK+YCPFCV VK LL +LGASF A+ELD E
Sbjct:    1 MALAKAKEIVSANPVVVFSKTYCPFCVSVKDLLSKLGASFNAVELDTE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A067EMY2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0339621mg PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.244e-25
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH+EGKLVPLLTEAGA+ K++ 
Sbjct:    1 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 58

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: B3F8F4_SOLTU (Glutaredoxin OS=Solanum tuberosum GN=GRX3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.438e-25
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKLVPLLTEAGA+ K+S 
Sbjct:   50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLVPLLTEAGALAKTST 107

HSP 2 Score: 78.9518 bits (193), Expect = 1.207e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            M+L KAK+IVS NPV VFSK+YCPFCV VK LL +LGA+FKA+ELD E
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: K4C310_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=LOC544298 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.180e-24
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGS+IQAALAEWTGQRTVPNVFIGGKHIGGCD+T ALH+EGKL+PLLTEAGAI K+S 
Sbjct:   50 DGSEIQAALAEWTGQRTVPNVFIGGKHIGGCDATTALHREGKLLPLLTEAGAIAKTST 107

HSP 2 Score: 78.9518 bits (193), Expect = 1.196e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            M+L KAK+IVS NPV VFSK+YCPFCV VK LL +LGA+FKA+ELD E
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A0A0B0P648_GOSAR (Glutaredoxin-C2-like protein OS=Gossypium arboreum GN=F383_26431 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.242e-24
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DG+DIQAALAEWTGQRTVPNVFIGG HIGGCDST  LH +GKLVPLLTEAGA TKSSV
Sbjct:   50 DGADIQAALAEWTGQRTVPNVFIGGNHIGGCDSTTGLHNQGKLVPLLTEAGAFTKSSV 107

HSP 2 Score: 92.0485 bits (227), Expect = 3.453e-18
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            MALQKAKDI+STN VVVFSKSYCPFCVDVKQLLQ+LGASFK IELD+E
Sbjct:    1 MALQKAKDIISTNTVVVFSKSYCPFCVDVKQLLQKLGASFKVIELDKE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: A1ECK0_9ROSI (Putative glutaredoxin OS=Citrus hybrid cultivar PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.711e-24
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH+EGKLVPLLTEAGA+ K++ 
Sbjct:   50 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 107

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: M0ZI72_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000482 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.897e-24
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = -2

Query:  911 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSS 1081
            DGS+IQAALAEWTGQRT+PNVFIGGKHIGGCDST ALH+EG LVPLLTEAGA  KSS
Sbjct:   50 DGSEIQAALAEWTGQRTIPNVFIGGKHIGGCDSTTALHREGNLVPLLTEAGAPVKSS 106

HSP 2 Score: 77.0258 bits (188), Expect = 6.303e-13
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -2

Query: 2321 MALQKAKDIVSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDRE 2464
            M L KAK+I++ NPVVVFSK+YCPFCV VK LL  +G SFKAIELD E
Sbjct:    1 MVLTKAKEIITANPVVVFSKTYCPFCVSVKDLLSNVGTSFKAIELDSE 48

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Match: V4THB5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017265mg PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.577e-24
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = -2

Query:  908 DGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAITKSSV 1081
            DGSDIQ+ALAEWTGQ+TVPNVFIGGKHIGGCDST ALH EGKLVPLLTEAGA+ K++ 
Sbjct:   50 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTAA 107

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
GLRX_SOLLC	1.228e-25	84.48	Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1	[more]
GRXC6_ORYSJ	1.222e-23	80.70	Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN...	[more]
GLRX_RICCO	1.641e-23	84.91	Glutaredoxin OS=Ricinus communis PE=3 SV=1	[more]
GLRX_VERFO	1.978e-23	83.02	Glutaredoxin OS=Vernicia fordii PE=3 SV=1	[more]
GRXC2_ARATH	1.030e-22	84.91	Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P...	[more]
GRXC4_ORYSJ	9.529e-22	75.86	Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub...	[more]
GRXC1_ARATH	9.340e-20	71.93	Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P...	[more]
GLRX_DICDI	1.178e-12	59.62	Glutaredoxin OS=Dictyostelium discoideum GN=grxA P...	[more]
GRS12_ARATH	5.585e-11	60.00	Monothiol glutaredoxin-S12, chloroplastic OS=Arabi...	[more]
GRS10_ORYSJ	1.887e-10	56.00	Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0094200 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2RWD4_GOSRA	6.154e-29	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
W9SBA6_9ROSA	2.681e-25	89.47	Uncharacterized protein OS=Morus notabilis GN=L484...	[more]
A0A076KWF9_TOBAC	2.801e-25	89.47	Gluaredoxin OS=Nicotiana tabacum PE=2 SV=1	[more]
A0A067EMY2_CITSI	9.244e-25	84.48	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
B3F8F4_SOLTU	9.438e-25	86.21	Glutaredoxin OS=Solanum tuberosum GN=GRX3 PE=2 SV=...	[more]
K4C310_SOLLC	1.180e-24	86.21	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
A0A0B0P648_GOSAR	1.242e-24	87.93	Glutaredoxin-C2-like protein OS=Gossypium arboreum...	[more]
A1ECK0_9ROSI	1.711e-24	84.48	Putative glutaredoxin OS=Citrus hybrid cultivar PE...	[more]
M0ZI72_SOLTU	3.897e-24	87.72	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
V4THB5_9ROSI	8.577e-24	84.48	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 56..69 score: 63.39 coord: 70..83 score: 47.62
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 48..73 e-value: 5.2E-7 score: 29.7
IPR002109	Glutaredoxin	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 1..99 score: 16.387
IPR012336	Thioredoxin-like fold	GENE3D	3.40.30.10		coord: 15..98 e-value: 6.3E-23 score: 80.2
IPR012336	Thioredoxin-like fold	SUPERFAMILY	52833	Thioredoxin-like	coord: 45..98
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 46..98
None	No IPR available	PANTHER	PTHR10168:SF104	SUBFAMILY NOT NAMED	coord: 46..98

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094200 ID=g.barbadense_cottongen_reftransV1_0094200; Name=g.barbadense_cottongen_reftransV1_0094200; organism=Gossypium barbadense; type=contig; length=2606bp
TAACAGTTTGGGAGGAGTTGCTTAAAGAGAACAAAGCCTTCTTTCAAGAG
TATTTCCAGGCTTTATCTCCGAGGCAGAGCTCTGTTGATTGAAGCTCTGC
ATGCGGATGATTGATGCAGTTCAGCAGAGAGTTTCCACTCAAAATATGAC
TGCTTTCAGAAAAAGAAAGCATTGGCAAAGATTCAAATAGCAAAAACATC
ATTATCGAAAGCTCCATGAATGAACTTCTAGATGTAAGACCTTGTTTAGA
AATTTAATAACTGAGCAGGAACTTGAGAGACCTGAGATACAGCCTTCAGA
CTACAAATTATAACCGCGTATAATATGCAGGTTTGTTTCTGCTTTTAGGA
CCTGATAAAAATTGTAAGCACGGTACCAGCTATTTCAATCGGATTCAGGG
CCGAGCATCTTTAGTACAAGTTGATTCAATTTTATCTATTTCATTTCATA
CGGTTATAAGGTAATATCATATACCCATATCTGAATATATCTCTAACAAA
CATTAAAAGCCATAATTTAAAGCTTAGTTCTTAAAATTTGGAATGAAGTT
GTGATATTTGCTGTCGTATAAACCAGTTCCAGTTCCAGTTCCTGTTTTAT
GTTTATGGTAAAACCAGTTAACTGTCCAAGCCAATCTTTAGGGCATCCAA
GGCAGAAGTCATGAAGAAAAAAGCCACAGGCAAAACAGCTGAAATCACAT
AGGACAAACATGACAAATCTCTAATATTAGATTCAGCTGTAAAAAGAAAC
TTGAACATGAAAATATTACTAGGAAGTTCAACAGCAATTCAGTTCGATGT
CTATATGCTATATTATGGATTCAACTTAAAGTACAGAATCAACATGAAAT
CGAACTTGGTATTCGTTTATTAATTTTAGGGGAGACAAGCAGCTTAACTC
TATTCTAAACAGATGATTTTGTAATAGCTCCAGCTTCAGTTAGCAGAGGA
ACCAGCTTACCTTCCTTGTGCAAGGCCATTGTAGAATCACAGCCACCAAT
GTGTTTCCCACCAATGAAAACGTTTGGCACAGTCCGCTGGCCGGTCCACT
CAGCCAGAGCTGCTTGAATATCAGATCCATCACCTGGAAAAATACAAAAA
ACGAAAGCTATATTTACTTTGACAACCAATGTGGATATATTCTCACTATT
TATTTTTAAAGCAAGAAAGAGTTGCAAATCCAACCTTAACTCATATTGAC
AATATAAAATTTCCATGTAAGCATCCACAACAATCCTGTGAGGAGCATAC
TGCTTCACTATATTAAACTACGATACCAAATCCCCAATTGAAGATAATGT
ACTCACACTTTTATAAGGCCAGGAAAAGACATTCAATCACTTTAAAGGCA
TTATTTAATAGCCATTATTATAGCTAATGGATGGAGTTGCATTCCATTAC
CTCATACCCAAAACCATACACTTGTGTTGTCCAAACCTACGTCTCAAACC
AATGGAACCACAAACAATGAAACCAACCATGCCTAACAGTCTTATAGGAT
CTTTCAAAGCAAGATTCAAATCAATCGAAGTTGGCTTCAAATTCATTTGT
TCAACATGATCGAGACATGGATATTGATAACAAGACTACAGATTTTCCTA
TACAACCATGTAAATAGACCTTCAAACTCAAGATTACAGCCCACATAAAG
CTTCCAACTGCTCCTTTTTCTTGTAAAGTTCAAGCAACCAACTAAAAATG
GCAGCCAAGTTGAATCAACATGATCCACATCAGTTAATCAATGTTTAATA
GAACGCAAAGTTTGGCTAACCAAAACAATCCTAATTGTTCTTAAAAGACT
TGGGTTAAAAAGCTGAATAACTTTGGATTAATCAAATACTACAAATAAAT
AAATAAAACATGAAAAATTAACATGAGCGCAGCATGAATATACATAATTT
CTCTGACTGAATTGACGTTGAGTTAACTCATAAGACCAACTCATTTAGGG
CTCAATATTAGTTTAGATGACAAACTTTATGCAAGATTTTTCATTTTCTT
TTCCTTTCTTTTCTTTTTTTTTTTTTTGGCTAATTTAGCTATAATTCATT
AGATTATAAAAGAACCGTTTCCTAAAAAGTGGGGAAAACACTTTCACACT
TGATATAACCCATCACGAACAAAAGTTTTGTTTGATTTTACTGAAAGATA
TCACAATATAAAGACACTAAACAGAATCGAATCAAATTAATACTCATAAA
ATTCAAGCAATTAAAAGTATTTTCATTTCAAAACCTAAAAATCACAAAAT
TGTTACGAAACAACATCGTATCTCAAAAAGGGGAAACTTGAATAAAAAAG
AAAAAGAAAGAAAACTAACTTTCTCTGTCGAGCTCAATGGCCTTGAAAGA
AGCTCCAAGTTGTTGAAGCAATTGCTTCACATCCACACAGAACGGACAGT
AGGACTTGCTGAAAACGACGACAGGATTGGTAGATACGATGTCCTTCGCC
TTTTGCAAAGCCATTTTTTTTTCTCTTTCTTAGCCCTGAAAAAATGACTT
CTTTTTTTTTTTTTGGATTTAAAGAGGGAGAGCGTTGAGGATTTTATAGT
GGAGAGAAAATGAGATAGAAAAGAGGTGTGGATTTCGTGAGAGTGGTGGA
GTGATG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR014025	Glutaredoxin_subgr
IPR002109	Glutaredoxin
IPR012336	Thioredoxin-like_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron transfer activity
GO:0015035	protein-disulfide reductase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis

Search form

g.barbadense_cottongen_reftransV1_0094200, g.barbadense_cottongen_reftransV1_0094200 (contig) Gossypium barbadense

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