g.barbadense_cottongen_reftransV1_0094183, g.barbadense_cottongen_reftransV1_0094183 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094183
Unique Nameg.barbadense_cottongen_reftransV1_0094183
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1987
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At10chromosomeg.barbadense_cottongen_reftransV1_0094183:1..1987 .
At10:20755502..20757600 +
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.039e-14
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I ++ L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL  A+ +G LQ LLAAS
Sbjct:   47 VIFSKSYCPYCLRSKRIFSQ-LKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLLAAS 130

HSP 2 Score: 53.9138 bits (128), Expect = 4.013e-7
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = -3 
Query: 1617 AKANNSASAFVQNAIFSNKIVMFSKSYCPY 1706
            A A NS SAFVQNAI SNKIV+FSKSYCPY
Sbjct:   27 AGAANSVSAFVQNAILSNKIVIFSKSYCPY 56
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.318e-13
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = -2 
Query:  721 SRDLLYNSTFLEY-ICSKRVILNEALTC*AFVLD---DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969
            +R  +++ T+  Y + +KR+  +         LD   DG EIQ V+LDLVGR TVPQVFVNG+H+GGSDD ++A  NG LQ LL  S
Sbjct:   41 NRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNS 127
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.648e-10
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = -2 
Query:  697 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS*C*KEGNK 873
            +DG  IQ  + ++VGR TVPQVF+NGKH+GGSDD  DA  +G L  LL  S     GNK
Sbjct:   78 EDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVS-----GNK 131
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 7.751e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = -2 
Query:  730 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLL 873
            +DG EIQ  + D+VGR TVPQVFV+GKH+GGSDD  +A  +G L  LL
Sbjct:   81 EDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A0D2VKS3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G099900 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.765e-23
Identity = 90/163 (55.21%), Postives = 92/163 (56.44%), Query Frame = -3 
Query: 1299 MVRQSRXXXXXXXXXXXXXXXXXXLRLAKANNSASAFVQNAIFSNKIVMFSKSYCPYVFVIYSFI*TSQSS**RIKIS*LSSTPHNQSYCPFFNPIFFVGISSKVELKRQFIDGXXXXXXXXLVRRHCMRAKRIFSELNEKPYVVELDLRGICGCSLSASDMY 1787
            MVRQSRLILSLLGAVLVLLVIGNALRLAKANNSASAFVQNAIFSNKIVMFSK                                   SYCP                                   +CMRAKRIF+ELNEKPYVVELDLRGICGCSL ASDMY
Sbjct:    1 MVRQSRLILSLLGAVLVLLVIGNALRLAKANNSASAFVQNAIFSNKIVMFSK-----------------------------------SYCP-----------------------------------YCMRAKRIFAELNEKPYVVELDLRGICGCSLFASDMY 93
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A0B0NJV0_GOSAR (Glutaredoxin-C3-like protein OS=Gossypium arboreum GN=F383_14052 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.495e-23
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I +E L    +V+     DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS
Sbjct:   48 VMFSKSYCPYCMRAKRIFSE-LNEKPYVVELDLRDDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 131

HSP 2 Score: 72.0182 bits (175), Expect = 2.803e-11
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = -3 
Query: 1617 MVRQSRXXXXXXXXXXXXXXXXXXLRLAKANNSASAFVQNAIFSNKIVMFSKSYCPY 1787
            MVRQSRLILSLLGAVLVLLVIGNALRLAKANNSASAFVQNAIFSNKIVMFSKSYCPY
Sbjct:    1 MVRQSRLILSLLGAVLVLLVIGNALRLAKANNSASAFVQNAIFSNKIVMFSKSYCPY 57
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A0D2T5P5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G099900 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.253e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = -2 
Query:  721 DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 873
            DDGAEIQYVILDLVGR TVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS
Sbjct:   81 DDGAEIQYVILDLVGRRTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 131

HSP 2 Score: 72.0182 bits (175), Expect = 3.292e-11
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = -3 
Query: 1617 MVRQSRXXXXXXXXXXXXXXXXXXLRLAKANNSASAFVQNAIFSNKIVMFSKSYCPY 1787
            MVRQSRLILSLLGAVLVLLVIGNALRLAKANNSASAFVQNAIFSNKIVMFSKSYCPY
Sbjct:    1 MVRQSRLILSLLGAVLVLLVIGNALRLAKANNSASAFVQNAIFSNKIVMFSKSYCPY 57
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A061DFF0_THECC (Glutaredoxin-1, grx1, putative OS=Theobroma cacao GN=TCM_000270 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.889e-17
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I +E L+   +V+     DDG +IQYV+LDLVGR TVPQVFV GKHIGGSDDL DAVH+G LQ LLAAS
Sbjct:   47 VIFSKSYCPYCFRAKRIFSE-LSEKPYVVELDLRDDGGKIQYVLLDLVGRSTVPQVFVKGKHIGGSDDLKDAVHSGKLQKLLAAS 130

HSP 2 Score: 62.003 bits (149), Expect = 8.492e-8
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = -3 
Query: 1611 RLAKANNSASAFVQNAIFSNKIVMFSKSYCPYVF 1712
            R AKANNSASAFVQN IFS+KIV+FSKSYCPY F
Sbjct:   25 RQAKANNSASAFVQNTIFSHKIVIFSKSYCPYCF 58
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A087GEK3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499300 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.636e-16
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I +E L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL+DAV NG LQ LLAAS
Sbjct:   48 VIFSKSYCPYCLRSKRIFSE-LKEQPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLADAVENGQLQKLLAAS 131
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A067KLJ3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13662 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.118e-16
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = -2 
Query:  727 RDLLYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLA 966
            R ++++ ++  Y    + I +E L   A+V+     DDGA+IQYV+LDLVGR TVPQVFVNGKHIGGSDDL DAV +G L  LLA
Sbjct:   61 RIVIFSKSYCPYCFRAKRIFSE-LHEKAYVVELDLRDDGAQIQYVLLDLVGRRTVPQVFVNGKHIGGSDDLKDAVQSGKLLELLA 144
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A078CZI2_BRANA (BnaC09g08100D protein OS=Brassica napus GN=BnaC09g08100D PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.802e-16
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I  E L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL+DAV NG LQ LLAAS
Sbjct:   53 VIFSKSYCPYCLRSKRIFRE-LKEQPFVVELDLREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLADAVENGQLQKLLAAS 136
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: A0A0D3E2Q3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.802e-16
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = -2 
Query:  721 LLYNSTFLEYICSKRVILNEALTC*AFVLD-----DGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 960
            ++++ ++  Y    + I  E L    FV++     DG +IQY +L+ VGR TVPQVFVNGKHIGGSDDL+DAV NG LQ LLAAS
Sbjct:   53 VIFSKSYCPYCLRSKRIFRE-LKEQPFVVELDLREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLADAVENGQLQKLLAAS 136
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: V7CML1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G166500g PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.931e-15
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = -2 
Query:  721 SRDLLYNSTFLEYIC-SKRVI--LNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLAAS 969
            +R  +++ ++  Y   SKR++  LNE      FV+     DDG EIQ V+LDL+GR TVPQVFVNGKHIGGSDDLS AV +G LQ LL+AS
Sbjct:   43 NRITVFSKSYCPYCLRSKRLLAELNEK----PFVVELDLRDDGYEIQSVLLDLIGRRTVPQVFVNGKHIGGSDDLSAAVQSGELQKLLSAS 129
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Match: B9T5Y7_RICCO (Glutaredoxin-1, grx1, putative OS=Ricinus communis GN=RCOM_0415510 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.903e-15
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = -2 
Query:  727 LLYNSTFLEYICSKRVILNEALTC*AFVL-----DDGAEIQYVILDLVGRGTVPQVFVNGKHIGGSDDLSDAVHNGTLQSLLA 960
            ++++ ++  Y    + I NE L    +V+     DDGA+IQYV+LDL GR TVPQVFVNGKHIGGSDDL  AV +G LQ LLA
Sbjct:   52 VIFSKSYCPYCLRAKRIFNE-LHEQPYVVELDLRDDGAQIQYVLLDLFGRRTVPQVFVNGKHIGGSDDLKAAVQSGKLQKLLA 133
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
GRXC3_ARATH1.039e-1448.24Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ2.318e-1348.28Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC4_ARATH2.648e-1054.24Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ7.751e-1060.42Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0094183 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2VKS3_GOSRA2.765e-2355.21Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NJV0_GOSAR6.495e-2365.88Glutaredoxin-C3-like protein OS=Gossypium arboreum... [more]
A0A0D2T5P5_GOSRA5.253e-2298.04Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DFF0_THECC1.889e-1755.29Glutaredoxin-1, grx1, putative OS=Theobroma cacao ... [more]
A0A087GEK3_ARAAL3.636e-1652.94Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
A0A067KLJ3_JATCU5.118e-1655.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A078CZI2_BRANA7.802e-1652.94BnaC09g08100D protein OS=Brassica napus GN=BnaC09g... [more]
A0A0D3E2Q3_BRAOL7.802e-1652.94Uncharacterized protein OS=Brassica oleracea var. ... [more]
V7CML1_PHAVU1.931e-1554.95Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
B9T5Y7_RICCO2.903e-1554.22Glutaredoxin-1, grx1, putative OS=Ricinus communis... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094183 ID=g.barbadense_cottongen_reftransV1_0094183; Name=g.barbadense_cottongen_reftransV1_0094183; organism=Gossypium barbadense; type=contig; length=1987bp
CCTCAGGTCCTAGGCACATGCAGTGGTGCTGCCAGTCATTCAAATTATTG
ACATTTTGGCACTCTAGGCCTATTCTGTTTTATAAATGTCTACAAGCCTT
CACCCCAAAAACAAAGTCCCACTGGCCATTGCCTGTGAACTGTGAATGTC
ATTACTGCTTATTATTATCTCATTTAAATGTGGCTGGGCTGCTGGGGCAA
TTTGTTGAGAGATGTCCTGCCAATAAATATGCACAAACTCTGGGGAAATC
CTTTAATCAGAATAGTTTCATTATGATTCAAAATCTTTGTTCAGTTAGAG
CCAAATTTCTTCTTTGTTTTCAAGGCCAAACATTTACATATGATTCTTCA
GTCAAATCCATGAATCAAATCCAACACCATAAAAATCCCACTTCAAAGAA
AGCATGCCTATACCAAGAAACAACAAAATAGAAAAAAGGGATCCATTGAC
AGTAAGTATAAGATTATGTGAAAACTAAATCAAAGTCATTGCTCCCTCCC
CACACCTACATTTACAATGAACTTTAGACCTAAAACATAGTCATTCTCTT
CCATGATGAAGATGAAATATAAGATAACCTCAAAGAGACATGCCATTATC
ACAGCGCACTCAACAAAATCTTGCAGTGAACTTACTAAGTTCACAACCCA
GAAATGATCTTCTAATCCACAGGCAGCTTTACAGTTCACAAGTCAATTTA
TTTCCTTCTTTCTAACATTAACTTGCAGCTAGAAGGCTTTGCAATGTACC
ATTATGGACTGCATCACTGAGATCATCAGAGCCTCCAATATGCTTTCCAT
TCACAAACACTTGTGGAACAGTTCCACGACCTACCAAATCCAGGATGACA
TACTGGATTTCAGCTCCATCATCTAAAACAAAAGCTCAACAAGTCAAAGC
TTCATTTAAAATTACTCTTTTTGAACATATATATTCTAAGAAGGTCGAAT
TGTATAAAAGGTCCCTGGACTATGTGTTTTTGGCAGATTTTGCCCCTCTA
CCATAATTTGATCATCTCTACATTCAATTGATTCAATCAAATAATTTGAC
TACCTTATTTTTCTTTAAACATTTGACGTACAAAAAATGCCAATATGTAT
ATGGCACATCATCATATGATAAAAAAAAAAGCGATGTCAAACTGTTTGAC
TGAATTAACAGAACATATTGATCTCGAGTTTGAAAATACACATCTCGAGA
CATAGGGAACTAAAAATGATCAAATTATAGTAGAGAGACTAAACCCATAA
AAAATGCCTAGTACAAGGACCTTCTATACAATTTAACCTATAAAGAACAT
ACATATCAGAAGCAGATAAAGAACATCCACAAATACCTCGGAGATCAAGC
TCTACAACATAAGGTTTCTCATTTAACTCAGAGAAAATGCGCTTGGCACG
CATGCAATGCCTACGAACAAGACAAAGCGAAAGAAGTTGGAGCAACCCAT
CAATGAATTGACGTTTCAGTTCAACTTTAGAAGAAATACCCACGAAGAAA
ATGGGGTTAAAAAAAGGGCAATAAGATTGATTATGCGGAGTACTAGATAA
CTATGATATCTTGATTCTTTATTATGAAGATTGAGAGGTTTAGATGAAAC
TGTAAATAACAAAGACATACGGGCAATAGGATTTGGAGAACATAACGATC
TTGTTGGAGAAGATGGCGTTTTGGACAAAGGCGGAGGCTGAATTGTTGGC
TTTGGCTAGCCTCAGAGCATTTCCAATCACCAGCAACACCAAAACTGCGC
CAAGTAGTGAAAGGATCAACCTCGATTGCCTCACCATGTCTTCTATTTCT
TTTATTCCAAACGGGGGAATTTCTGGGGTTTTGCCTGTAACTCACAAAGG
AATCAACTTTACCGATTTGTAGAGTTTCATATACATCAAAGTGCGTGTTT
GATTCATCATCTCCAGAGGCCTAGGCGAGTAGCCCATCAAATTTGAGGCC
AATTCTAGTTCATTGGACTTCCAAGTTTGAGACTTCG
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