g.barbadense_cottongen_reftransV1_0093858, g.barbadense_cottongen_reftransV1_0093858 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0093858
Unique Nameg.barbadense_cottongen_reftransV1_0093858
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2813
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt12chromosomeg.barbadense_cottongen_reftransV1_0093858:1..2813 .
Dt12:13272354..13276650 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2SWE1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.202e-89
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = -1
Query: 1200 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVS 1592
            +   LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV+
Sbjct:   97 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSVA 227          

HSP 2 Score: 82.8037 bits (203), Expect = 2.202e-89
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923
            LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:  258 LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 293          

HSP 3 Score: 73.9442 bits (180), Expect = 2.202e-89
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
            VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH
Sbjct:  226 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 260          

HSP 4 Score: 166.777 bits (421), Expect = 2.829e-41
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -2
Query: 2180 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2410
            MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWVVG
Sbjct:    1 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVVG 77          

HSP 5 Score: 71.2478 bits (173), Expect = 2.896e-24
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3
Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQYMYYSFFRETVNSDAEDYGDHMDASKRI
Sbjct:  350 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 381          

HSP 6 Score: 70.8626 bits (172), Expect = 2.896e-24
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1
Query:  294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389
            SILVRTSEWENIKPNMPWLLDAAICVALDLV+
Sbjct:  319 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 350          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2SWD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.140e-80
Identity = 168/259 (64.86%), Postives = 180/259 (69.50%), Query Frame = -1
Query:  816 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1592
            +   LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS             ++N+ +                ++++ +N          GSK W+      T              RR             LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   97 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS-------------VANYGT----------------FLAASINLPL-------GSKAWMEARSGFT-------------SRR-------------LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 293          

HSP 2 Score: 166.777 bits (421), Expect = 6.592e-42
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -2
Query: 2180 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2410
            MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWVVG
Sbjct:    1 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVVG 77          

HSP 3 Score: 73.9442 bits (180), Expect = 7.633e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
            VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH
Sbjct:  226 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 260          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2RB29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 2.989e-80
Identity = 168/258 (65.12%), Postives = 179/258 (69.38%), Query Frame = -1
Query:  819 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN 1592
            +   LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS             ++N+ +                ++++ +N          GSK W+      T              RR             LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN
Sbjct:   97 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS-------------VANYGT----------------FLAASINLPL-------GSKAWMEARSGFT-------------SRR-------------LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN 292          

HSP 2 Score: 166.777 bits (421), Expect = 5.091e-42
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -2
Query: 2180 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2410
            MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWVVG
Sbjct:    1 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVVG 77          

HSP 3 Score: 73.9442 bits (180), Expect = 6.969e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
            VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH
Sbjct:  226 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 260          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2RB35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 4.510e-80
Identity = 167/259 (64.48%), Postives = 179/259 (69.11%), Query Frame = -1
Query:  816 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1592
            +   LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV             +N+ +                ++++ +N          GSK W+      T               RR +             EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   31 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV-------------ANYGT----------------FLAASINLPL-------GSKAWMEARSGFTS--------------RRLLH------------EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 227          

HSP 2 Score: 71.2478 bits (173), Expect = 2.235e-24
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1
Query:  294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389
            SILVRTSEWENIKPNMPWLLDAAICVALDLV+
Sbjct:  253 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 284          

HSP 3 Score: 71.2478 bits (173), Expect = 2.235e-24
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3
Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQYMYYSFFRETVNSDAEDYGDHMDASKRI
Sbjct:  284 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 315          

HSP 4 Score: 73.9442 bits (180), Expect = 8.679e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
            VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH
Sbjct:  160 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 194          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DFX9_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 11 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 3.165e-62
Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1
Query:  816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580
            LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q            E SM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   90 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQ------------EQSMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 282          

HSP 2 Score: 142.895 bits (359), Expect = 1.006e-33
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2
Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75          

HSP 3 Score: 67.781 bits (164), Expect = 7.311e-9
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  215 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 249          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DHH8_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 8 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.010e-61
Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1
Query:  816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580
            LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q Q            SM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   90 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 282          

HSP 2 Score: 142.51 bits (358), Expect = 1.206e-33
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2
Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75          

HSP 3 Score: 67.781 bits (164), Expect = 7.066e-9
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  215 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 249          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DG08_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 7 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.214e-61
Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1
Query:  816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580
            LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q Q            SM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   99 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291          

HSP 2 Score: 143.28 bits (360), Expect = 8.557e-34
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2
Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75          

HSP 3 Score: 67.781 bits (164), Expect = 6.844e-9
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  224 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 258          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DHH5_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 3 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.071e-61
Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1
Query:  816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580
            LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q Q            SM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   99 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291          

HSP 2 Score: 142.895 bits (359), Expect = 1.181e-33
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2
Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75          

HSP 3 Score: 67.781 bits (164), Expect = 7.244e-9
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  224 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 258          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DG05_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 2 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.353e-61
Identity = 139/263 (52.85%), Postives = 156/263 (59.32%), Query Frame = -1
Query:  801 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV---SIELN 1580
            LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q Q            SM HS FGQWLGWLMAAIYMGGRIPQIWLN+   ++EL 
Sbjct:   99 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNIKRGTVELT 299          

HSP 2 Score: 142.895 bits (359), Expect = 1.157e-33
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2
Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75          

HSP 3 Score: 67.781 bits (164), Expect = 7.293e-9
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  224 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 258          
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DFX7_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 6 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.114e-60
Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1
Query:  816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580
            LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK  SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ +     +   +            +P                          GSK W+      T               RR +Q Q            SM HS FGQWLGWLMAAIYMGGRIPQIWLN+
Sbjct:   90 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 282          

HSP 2 Score: 142.895 bits (359), Expect = 3.473e-33
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2
Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401
            S AYCVKENKPC  WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G
Sbjct:    2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75          

HSP 3 Score: 62.7734 bits (151), Expect = 2.612e-16
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = -1
Query:  294 IMSSFAL----NVFHSILVRTSEWENIKPNMPWLLDAAICVALDLVV 422
            +M  FAL        SILVRT+EWE+IK NMPWLLDAA+CVALDL +
Sbjct:  293 LMFIFALIANATYVASILVRTTEWESIKANMPWLLDAAVCVALDLFI 339          

HSP 4 Score: 52.373 bits (124), Expect = 2.612e-16
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = -3
Query:  130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225
            IILQY+YY +FR+T NSD EDYGD+M+ASK +
Sbjct:  339 IILQYVYYKYFRKTDNSDGEDYGDYMEASKEV 370          

HSP 5 Score: 68.1662 bits (165), Expect = 1.060e-8
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2
Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114
             A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL 
Sbjct:  215 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 249          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2SWE1_GOSRA2.202e-8996.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SWD6_GOSRA1.140e-8064.86Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RB29_GOSRA2.989e-8065.12Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RB35_GOSRA4.510e-8064.48Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DFX9_THECC3.165e-6253.73PQ-loop repeat family protein / transmembrane fami... [more]
A0A061DHH8_THECC1.010e-6153.73PQ-loop repeat family protein / transmembrane fami... [more]
A0A061DG08_THECC1.214e-6153.73PQ-loop repeat family protein / transmembrane fami... [more]
A0A061DHH5_THECC2.071e-6153.73PQ-loop repeat family protein / transmembrane fami... [more]
A0A061DG05_THECC2.353e-6152.85PQ-loop repeat family protein / transmembrane fami... [more]
A0A061DFX7_THECC1.114e-6053.73PQ-loop repeat family protein / transmembrane fami... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR16201FAMILY NOT NAMEDcoord: 97..133
coord: 8..69
NoneNo IPR availablePANTHERPTHR16201:SF43PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEINcoord: 97..133
coord: 8..69
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0093858 ID=g.barbadense_cottongen_reftransV1_0093858; Name=g.barbadense_cottongen_reftransV1_0093858; organism=Gossypium barbadense; type=contig; length=2813bp
ATATTCCTACAGAAAGAGAAGCTTATACTACTACTACTACTACTACTACT
ACTACTACTACTACTACTACCACCACCATACTAGCGAGATACAAACAGCA
ACTTGTCCCCTAAAGATTTCAGTCATTTAGATTCTTTTACTTGCATCCAT
GTGATCTCCATAATCTTCTGCATCACTGTTAACTGTCTCTCTGAAAAAGG
AGTAATACATATACTGTAATATGATCTGTTATAAACAATGTTAAGGTTTA
ATGTTTGTGTAAGCAGAAATTGTTGTAAGAAAATCAACAAGGATACAACT
AAGTCGAGTGCCACGCAAATTGCAGCATCCAGCAGCCATGGCATGTTAGG
CTTAATGTTTTCCCATTCACTGGTTCTCACTAGAATACTGTGAAAAACAT
TCAAGGCAAAGCTTGACATAATCATACAACACGGTACCTAAAATTGTAAA
ATCAATGTCTAAAAAACCGGAATCGATGTCAAAGAACTGTGAGAGCTCCA
GCCACCGGTTCAACAGATCATTTTTTTTTTACAGCGGTGAGTGAAATAAA
TAGAAAAGTCTGAGGCAGAGCTAACCTTGCCACATATGTAGCATTAGCTA
TCAGTGCAAAGATGAACATGAGAGGATTCAAGCCCTATATGATTTCCACT
CATTTAGTCAAATTCAATATATTTATATATAGTTAAGAGTTAATAGTACT
ACCTCAACACTGCCTCTTTTGATCTGGTCAACAAAAGCAAATCATTTGGT
AAGTAACCAAAACGACTATAATGAGAAAAAAAAATGCATGGTTTTTATGA
ATTTAGCTCAATGCTTACATTTAACCATATCTGAGGGATTCGGCCGCCCA
TGTATATGGCGGCCATTAGCCATCCCAGCCACTGCCCAAAGGTGCTGTGG
CTCATACTGTGTTCCTGCAACAGAGACTGATGGTTTTAAGTTATTTGCAG
TTGCATGGGTCGACGTCGATCTTTGTCGAATTCGAGTTAGAATTAACCAG
GAACGGTACATGTAATAGTCTTCGACTGGTAAAGCCAGATCTTGCTTCCA
TCCATGCCTTACTTCCTAAAGGCAAGTTGATTGAGGCAGCTAGAAATGTA
CCATAATTTGCAACCTGATCATTCATACGGAATTTACACTAAAAAAACCG
AACAAAAGTTGGATATTTTAAGTTTTTGAAACATCAAAGCGGGTTCAAGG
CTCACGGATCTTGGGATTGGCCTAGGTTGAGTGGCGGACTTTTTTGATGA
AACATGAGCTGATTCATCTTCTGAGGAGGAACCACTGTCGAGTTCCATAG
CTGAAGGGCCACTTTTAGCTGCTCTCATATATGTTCGGATAGGTGGAGTG
CCACTGCCAGCCAAAGATCTAGCCGACATGTAGTAATACTCCCTGCGAGG
ATTGGGTTTTTGTGAGGCCCTAGGAATGGGAATGCCTGAGCCAGGTTTCC
CAGCCTTCAATGGTTTTTTCTCATCTTCAACCATGTTGTCAGCTTTGATC
CGTCTACATTTCCACCACCTATAGATATAATCATAGTATATACTTTCAAG
TACTAGAACCACAGTACTAGCTGTATAGAGCTGACAAGCAAAATCAGGCA
ATTAGGTTTGGAAGTGCCAATGCAACCCAAAGTATGGGTTATGAACCGAA
TGGGCTCGGTACAACTTTGAACAATAGACCCATGATGTTGACAATGACTT
GGGTTAGATCGTTTTACTTTGACCCAAATGGTTCTTCAAGAATAGTCCTT
AAGTGCAATAATAAATAGAAGAAGGGTTCATTAATGAAATGAAACATGTA
AAACCTAGACTGTCAGTAGCGAACCAGAGCAGTGTAGAACTGAGTTGGCA
ACTGCATCCACAAAATTCAATTAGTCTCGTTAATCTTTTTTTTTTTTTTC
ATATGAAAGATAGCATTTTTGTTGATAAAACAAAGTCATGGTTAAATCCA
ATAAAGCCCGAGGAAAAGAAAAAGAGAGCTCACCGTTGCAGGTTCCAGAA
GGCATCCAACAAGGTTGAACACATCACTGCAACACCAAACAAAGATGAAC
GATAGTCATGATAAAGCATAAACAAGACAGGAATTTATATATGATGACGA
ACATTCTATGTATCATTAAAGAAAAGAAAACGAGAGTGATAATATGGTTT
TTCTTTTTGGAGGAGAAGAAGGAATCAAACCCAACAACCCAAGTGAGGAG
AAAAAGAAGGGAAACTCCATGGCTGGACTTGGTTTTGAAGTTGGTGATGA
TTTGAGGGATATCTGCAACTCCCCAGCAGACAAGACTAGTTAACCCAAAA
CCAAAAGACAAATCATCCTTTAGATTGCAAAGACAGTCTTTGAAATATCT
CTCAACCCACACATTGCAGGGCTTGTTTTCCTTAACACAGTAAGCTTGAG
ACTGAGACATACCAAAACAAAACAAAAAAAGAAAATACTGCAAAAAAAAC
TAGGTAAGTTGATGAGTTTTGTGGAAAGAAGAGCCTATATATATCCAAAA
GTTGGTTCAATTAGTATTAGTAAATAGAAAGACCAGAAATCACTTAAAAT
TATTTATGTCCTTTTAAGAGTGAAGCGAAAGGACTTCAACGCTCTCTCTC
TTCTCTTCCTCTTTCTCGTATGCATATTCTTATCCTGGATGCTTTTACAT
TCAATCTTCAACTTTTTCACACAGAAAAACCACTTTTGATTTCTTGTATG
AATCTTATGAAAGCATATTCCTGTCATTCATCGATGCATGATTGCATGTA
AAAACTTCATGGACGGTTCAAATTCATCAGTGCTGCAACAAAGGAAAATG
AGACAATATTGAA
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