g.barbadense_cottongen_reftransV1_0093858, g.barbadense_cottongen_reftransV1_0093858 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2SWE1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 2.202e-89 Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = -1 Query: 1200 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVS 1592 + LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV+ Sbjct: 97 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSVA 227 HSP 2 Score: 82.8037 bits (203), Expect = 2.202e-89 Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1 Query: 816 LLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 923 LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 258 LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 293 HSP 3 Score: 73.9442 bits (180), Expect = 2.202e-89 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH Sbjct: 226 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 260 HSP 4 Score: 166.777 bits (421), Expect = 2.829e-41 Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -2 Query: 2180 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2410 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWVVG Sbjct: 1 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVVG 77 HSP 5 Score: 71.2478 bits (173), Expect = 2.896e-24 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3 Query: 130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI Sbjct: 350 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 381 HSP 6 Score: 70.8626 bits (172), Expect = 2.896e-24 Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 Query: 294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389 SILVRTSEWENIKPNMPWLLDAAICVALDLV+ Sbjct: 319 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 350
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2SWD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 1.140e-80 Identity = 168/259 (64.86%), Postives = 180/259 (69.50%), Query Frame = -1 Query: 816 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1592 + LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS ++N+ + ++++ +N GSK W+ T RR LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 97 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS-------------VANYGT----------------FLAASINLPL-------GSKAWMEARSGFT-------------SRR-------------LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 293 HSP 2 Score: 166.777 bits (421), Expect = 6.592e-42 Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -2 Query: 2180 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2410 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWVVG Sbjct: 1 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVVG 77 HSP 3 Score: 73.9442 bits (180), Expect = 7.633e-11 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH Sbjct: 226 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 260
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2RB29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 2.989e-80 Identity = 168/258 (65.12%), Postives = 179/258 (69.38%), Query Frame = -1 Query: 819 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN 1592 + LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS ++N+ + ++++ +N GSK W+ T RR LL EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN Sbjct: 97 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRS-------------VANYGT----------------FLAASINLPL-------GSKAWMEARSGFT-------------SRR-------------LLHEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN 292 HSP 2 Score: 166.777 bits (421), Expect = 5.091e-42 Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = -2 Query: 2180 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2410 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWVVG Sbjct: 1 MSQSQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVVG 77 HSP 3 Score: 73.9442 bits (180), Expect = 6.969e-11 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH Sbjct: 226 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 260
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A0D2RB35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G070100 PE=4 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 4.510e-80 Identity = 167/259 (64.48%), Postives = 179/259 (69.11%), Query Frame = -1 Query: 816 FACQLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1592 + LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV +N+ + ++++ +N GSK W+ T RR + EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 31 YTALLYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELDSGSSSEDESAHVSSKKSATQPRPIPRSV-------------ANYGT----------------FLAASINLPL-------GSKAWMEARSGFTS--------------RRLLH------------EHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNI 227 HSP 2 Score: 71.2478 bits (173), Expect = 2.235e-24 Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 Query: 294 SILVRTSEWENIKPNMPWLLDAAICVALDLVV 389 SILVRTSEWENIKPNMPWLLDAAICVALDLV+ Sbjct: 253 SILVRTSEWENIKPNMPWLLDAAICVALDLVI 284 HSP 3 Score: 71.2478 bits (173), Expect = 2.235e-24 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -3 Query: 130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI Sbjct: 284 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 315 HSP 4 Score: 73.9442 bits (180), Expect = 8.679e-11 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH Sbjct: 160 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 194
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DFX9_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 11 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 3.165e-62 Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1 Query: 816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580 LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ + + + +P GSK W+ T RR +Q E SM HS FGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 90 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQ------------EQSMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 282 HSP 2 Score: 142.895 bits (359), Expect = 1.006e-33 Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401 S AYCVKENKPC WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G Sbjct: 2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75 HSP 3 Score: 67.781 bits (164), Expect = 7.311e-9 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL Sbjct: 215 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 249
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DHH8_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 8 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 1.010e-61 Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1 Query: 816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580 LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ + + + +P GSK W+ T RR +Q Q SM HS FGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 90 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 282 HSP 2 Score: 142.51 bits (358), Expect = 1.206e-33 Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401 S AYCVKENKPC WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G Sbjct: 2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75 HSP 3 Score: 67.781 bits (164), Expect = 7.066e-9 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL Sbjct: 215 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 249
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DG08_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 7 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 1.214e-61 Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1 Query: 816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580 LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ + + + +P GSK W+ T RR +Q Q SM HS FGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 99 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291 HSP 2 Score: 143.28 bits (360), Expect = 8.557e-34 Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401 S AYCVKENKPC WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G Sbjct: 2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75 HSP 3 Score: 67.781 bits (164), Expect = 6.844e-9 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL Sbjct: 224 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 258
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DHH5_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 3 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 2.071e-61 Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1 Query: 816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580 LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ + + + +P GSK W+ T RR +Q Q SM HS FGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 99 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 291 HSP 2 Score: 142.895 bits (359), Expect = 1.181e-33 Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401 S AYCVKENKPC WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G Sbjct: 2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75 HSP 3 Score: 67.781 bits (164), Expect = 7.244e-9 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL Sbjct: 224 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 258
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DG05_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 2 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 2.353e-61 Identity = 139/263 (52.85%), Postives = 156/263 (59.32%), Query Frame = -1 Query: 801 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV---SIELN 1580 LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ + + + +P GSK W+ T RR +Q Q SM HS FGQWLGWLMAAIYMGGRIPQIWLN+ ++EL Sbjct: 99 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNIKRGTVELT 299 HSP 2 Score: 142.895 bits (359), Expect = 1.157e-33 Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401 S AYCVKENKPC WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G Sbjct: 2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75 HSP 3 Score: 67.781 bits (164), Expect = 7.293e-9 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL Sbjct: 224 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 258
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Match: A0A061DFX7_THECC (PQ-loop repeat family protein / transmembrane family protein isoform 6 OS=Theobroma cacao GN=TCM_000466 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 1.114e-60 Identity = 137/255 (53.73%), Postives = 152/255 (59.61%), Query Frame = -1 Query: 816 LYTASTVVLVLESIYYDYIYRWWKCRRIKADNMVEDEKKPLKAGKPGSGIPIPRASQKPNPRREYYYMSARSLAGSGTPPIRTYMRAAKSGPSAMELXXXXXXXXXXXXXXSKKSATQPRPIPRSVSLEPALMFQKLKISNFCSVFLV*IPYE*SGCKLWYISSCLNQLAFRK*GMDGSKIWLYQSKTITCTVPG*F*LEFDKDRRRPMQLQIT*NHQSLLQEHSMSHSTFGQWLGWLMAAIYMGGRIPQIWLNV 1580 LYT ST+VLVL++IYYD +YRWWKCRRIK DNMVEDEKKPLK GK SGIPIP+ S K NPR E+YY SARSLAGSGT P RTYMR AKSGPSAMELDS SSSEDE+A VS KKS TQPRPIPR+ + + + +P GSK W+ T RR +Q Q SM HS FGQWLGWLMAAIYMGGRIPQIWLN+ Sbjct: 90 LYTTSTLVLVLQTIYYDNVYRWWKCRRIKTDNMVEDEKKPLKPGKADSGIPIPKPSPKANPRGEFYYTSARSLAGSGTSPFRTYMRVAKSGPSAMELDSDSSSEDEAAPVSFKKSGTQPRPIPRAAASYGTFLAASVN-----------LPL-------------------------GSKAWMEARTGFT--------------SRRLLQEQ------------SMEHSAFGQWLGWLMAAIYMGGRIPQIWLNI 282 HSP 2 Score: 142.895 bits (359), Expect = 3.473e-33 Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 2180 SQAYCVKENKPCNVWVERYFKDCLCNLKDDLSFGFGLTSLVCWGVADIPQIITNFKTKSSHGVSLLFLLTWVVG 2401 S AYCVKENKPC WVER+FKDCLCNLKDD SF FGL SLVCWGVA+IPQIITNFKTKSSHGVSLLFLLTWV G Sbjct: 2 SHAYCVKENKPCVRWVERHFKDCLCNLKDDFSFAFGLVSLVCWGVAEIPQIITNFKTKSSHGVSLLFLLTWVAG 75 HSP 3 Score: 62.7734 bits (151), Expect = 2.612e-16 Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = -1 Query: 294 IMSSFAL----NVFHSILVRTSEWENIKPNMPWLLDAAICVALDLVV 422 +M FAL SILVRT+EWE+IK NMPWLLDAA+CVALDL + Sbjct: 293 LMFIFALIANATYVASILVRTTEWESIKANMPWLLDAAVCVALDLFI 339 HSP 4 Score: 52.373 bits (124), Expect = 2.612e-16 Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = -3 Query: 130 IILQYMYYSFFRETVNSDAEDYGDHMDASKRI 225 IILQY+YY +FR+T NSD EDYGD+M+ASK + Sbjct: 339 IILQYVYYKYFRKTDNSDGEDYGDYMEASKEV 370 HSP 5 Score: 68.1662 bits (165), Expect = 1.060e-8 Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2 Query: 1010 VANYGTFLAASINLPLGSKAWMEARSGFTSRRLLH 1114 A+YGTFLAAS+NLPLGSKAWMEAR+GFTSRRLL Sbjct: 215 AASYGTFLAASVNLPLGSKAWMEARTGFTSRRLLQ 249 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0093858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093858 ID=g.barbadense_cottongen_reftransV1_0093858; Name=g.barbadense_cottongen_reftransV1_0093858; organism=Gossypium barbadense; type=contig; length=2813bpback to top |