g.barbadense_cottongen_reftransV1_0093432, g.barbadense_cottongen_reftransV1_0093432 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0093432
Unique Nameg.barbadense_cottongen_reftransV1_0093432
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At10chromosomeg.barbadense_cottongen_reftransV1_0093432:13..2302 .
At10:11334523..11360359 +
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy Swiss-Prot
Match: MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.813e-31
Identity = 86/169 (50.89%), Postives = 117/169 (69.23%), Query Frame = -3 
Query:  645 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIP--IXXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQ-GMSSNMFA 1142
            M+TLK+HLPFSG EG+NELR+IA RFEEKIF+ A +Q+DYL++IS+KMLTME KSQN   ++   +IP       + +   +QGQ +P  +S   +Q+   LL Q++ NN AS G+  S  L S MP VS +T N   +VV QN NMQN++G+ Q+S GQ G+SSNMF+
Sbjct:   39 METLKKHLPFSGPEGINELRRIAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSA--AIPAANNGTSIDSIPTNQGQLLPGSLSTNQSQAPQPLLSQTMQNNTAS-GMTGSTALPSSMPPVSSITNNNTTSVVNQNANMQNVAGMLQDSSGQHGLSSNMFS 204

HSP 2 Score: 61.6178 bits (148), Expect = 2.686e-8
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MD NNW  + P+GEP MDTGDWRTQL P SRQ+IVNK+
Sbjct:    1 MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A0D2T4M4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G085600 PE=4 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 3.415e-85
Identity = 239/258 (92.64%), Postives = 245/258 (94.96%), Query Frame = -3 
Query:  369 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPIXXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSLMQSHMXXXXXXXXXXXXXXXXXXXXXXXSVIQQSSMQSTPLPG 1142
            MDTLKRHLPFSGQ+GLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTG+NS PPDPGSQGMQNQVHSQGQSIPISLQ NQSQAQLLPQSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN  +Q    +     QQQQQQQQQQLYHQQLQNQL+KQK+QQGNLQPSLMQSHMQQQQNLLPPTQLQSSQQSGMQTSSVIQQSSMQSTPLPG
Sbjct:   39 MDTLKRHLPFSGQDGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGNNSKPPDPGSQGMQNQVHSQGQSIPISLQCNQSQAQLLPQSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN--QQRQMPRQQVLPQQQQQQQQQQLYHQQLQNQLIKQKLQQGNLQPSLMQSHMQQQQNLLPPTQLQSSQQSGMQTSSVIQQSSMQSTPLPG 294

HSP 2 Score: 78.5666 bits (192), Expect = 1.245e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MDTNNW STPPSGEPTMDTGDWRTQLQP SRQRIVNK+
Sbjct:    1 MDTNNWRSTPPSGEPTMDTGDWRTQLQPDSRQRIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A0D2RIW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G085600 PE=4 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.469e-85
Identity = 239/258 (92.64%), Postives = 245/258 (94.96%), Query Frame = -3 
Query:  369 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPIXXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSLMQSHMXXXXXXXXXXXXXXXXXXXXXXXSVIQQSSMQSTPLPG 1142
            MDTLKRHLPFSGQ+GLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTG+NS PPDPGSQGMQNQVHSQGQSIPISLQ NQSQAQLLPQSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN  +Q    +     QQQQQQQQQQLYHQQLQNQL+KQK+QQGNLQPSLMQSHMQQQQNLLPPTQLQSSQQSGMQTSSVIQQSSMQSTPLPG
Sbjct:   39 MDTLKRHLPFSGQDGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGNNSKPPDPGSQGMQNQVHSQGQSIPISLQCNQSQAQLLPQSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN--QQRQMPRQQVLPQQQQQQQQQQLYHQQLQNQLIKQKLQQGNLQPSLMQSHMQQQQNLLPPTQLQSSQQSGMQTSSVIQQSSMQSTPLPG 294

HSP 2 Score: 78.5666 bits (192), Expect = 1.157e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MDTNNW STPPSGEPTMDTGDWRTQLQP SRQRIVNK+
Sbjct:    1 MDTNNWRSTPPSGEPTMDTGDWRTQLQPDSRQRIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A0B0PQG8_GOSAR (Putative mediator of RNA polymerase II transcription subunit 15 OS=Gossypium arboreum GN=F383_14349 PE=4 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.617e-82
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = -3 
Query:  642 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPIXXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN 1142
            MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQ+TVPNTG+NS PPDPGSQGMQNQVHSQGQSIPISLQSNQSQAQLLP SVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN
Sbjct:   39 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQSTVPNTGNNSKPPDPGSQGMQNQVHSQGQSIPISLQSNQSQAQLLPPSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN 205

HSP 2 Score: 78.5666 bits (192), Expect = 1.255e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MDTNNW STPPSGEPTMDTGDWRTQLQP SRQRIVNK+
Sbjct:    1 MDTNNWRSTPPSGEPTMDTGDWRTQLQPDSRQRIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A061G942_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027312 PE=4 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.229e-73
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = -3 
Query:  642 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPI--XXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN 1142
            MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAA+SQSDYL+RISLKMLTME KSQN++PNTG+N  PPDPGSQ MQNQVH QGQSIPI      +Q++ QLLPQ+VPNNMASAGVQSSAGLQSGMP VSGLTQNP+PNVVGQN+NMQNMSGI+QNSLGQGM SN+FAN
Sbjct:   39 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKSQNSIPNTGNNGKPPDPGSQAMQNQVHGQGQSIPIPLQSNQSQARQQLLPQNVPNNMASAGVQSSAGLQSGMPPVSGLTQNPIPNVVGQNSNMQNMSGITQNSLGQGMPSNIFAN 207

HSP 2 Score: 70.8626 bits (172), Expect = 2.887e-9
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MD NNW  TPPSGEPTMDTGDWRTQLQ  SRQRIVNK+
Sbjct:    1 MDNNNWRPTPPSGEPTMDTGDWRTQLQADSRQRIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A061G947_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027316 PE=4 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 4.308e-72
Identity = 140/168 (83.33%), Postives = 150/168 (89.29%), Query Frame = -3 
Query:  642 DTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPI--XXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN 1139
            DTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAA+SQSDYL+RISLKMLTME K QNT+PNTG NS PPDPGSQ MQNQVHSQGQSIPI      +Q++ QLLPQ+VPNNM SAGVQSSAGLQ GMP VSGLTQNP+PNVVGQN+NMQNMSG  QNSLGQGM SN+FAN
Sbjct:   40 DTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAASSQSDYLRRISLKMLTMETKCQNTIPNTGTNSKPPDPGSQAMQNQVHSQGQSIPIPLQSNQSQTRQQLLPQNVPNNMTSAGVQSSAGLQYGMPPVSGLTQNPIPNVVGQNSNMQNMSGTMQNSLGQGMPSNIFAN 207

HSP 2 Score: 69.3218 bits (168), Expect = 9.832e-9
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MD +NW  TPPSGEPTMDTGDWRTQLQ  SRQRIVNK+
Sbjct:    1 MDNSNWRPTPPSGEPTMDTGDWRTQLQADSRQRIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A0D2RZQ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G126200 PE=4 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 4.067e-71
Identity = 139/169 (82.25%), Postives = 155/169 (91.72%), Query Frame = -3 
Query:  642 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPI--XXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN 1142
            MDTLKRHLPFSGQ+GL+ELRKIAVRFEEKIFTAA+SQ+DYL+RISLKMLTME KSQNT+PNTG+NS PPDPGSQGMQNQVHSQGQS+PI      +Q+  QLLPQSVPNNMASAGVQSSAGLQSGMP VSGL+QNP+ NVVGQN+N+QNMSGI QNS+GQGM SN+FAN
Sbjct:   39 MDTLKRHLPFSGQDGLSELRKIAVRFEEKIFTAASSQTDYLRRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPVSGLSQNPISNVVGQNSNIQNMSGILQNSMGQGMPSNIFAN 207

HSP 2 Score: 71.2478 bits (173), Expect = 2.088e-9
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MDTNNW  TPPSGEP+MD+GDWRT LQP SRQRIVNK+
Sbjct:    1 MDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A0D2TIP0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G126200 PE=4 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.857e-71
Identity = 139/169 (82.25%), Postives = 155/169 (91.72%), Query Frame = -3 
Query:  642 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPI--XXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQNSLGQGMSSNMFAN 1142
            MDTLKRHLPFSGQ+GL+ELRKIAVRFEEKIFTAA+SQ+DYL+RISLKMLTME KSQNT+PNTG+NS PPDPGSQGMQNQVHSQGQS+PI      +Q+  QLLPQSVPNNMASAGVQSSAGLQSGMP VSGL+QNP+ NVVGQN+N+QNMSGI QNS+GQGM SN+FAN
Sbjct:   39 MDTLKRHLPFSGQDGLSELRKIAVRFEEKIFTAASSQTDYLRRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPVSGLSQNPISNVVGQNSNIQNMSGILQNSMGQGMPSNIFAN 207

HSP 2 Score: 71.2478 bits (173), Expect = 2.337e-9
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = -2 
Query: 1972 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2085
            MDTNNW  TPPSGEP+MD+GDWRT LQP SRQRIVNK+
Sbjct:    1 MDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKI 38
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: A0A0D2RED2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G085500 PE=4 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.084e-63
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = -3 
Query:  717 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNTGDNSIPPDPGSQGMQNQVHSQGQSIPIXXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQN 1142
            M+T  RHLPFSGQ+GLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLT+E KSQNTVPNT DNSIPPDPGSQGMQNQVHSQGQSIPISLQSNQSQAQLLPQSVPNNMASAGVQSSAGLQS MPAVSGLT +PV +VV Q+
Sbjct:   39 METFMRHLPFSGQDGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTVEIKSQNTVPNTRDNSIPPDPGSQGMQNQVHSQGQSIPISLQSNQSQAQLLPQSVPNNMASAGVQSSAGLQSEMPAVSGLTLSPVSDVVEQH 180

HSP 2 Score: 77.411 bits (189), Expect = 1.399e-12
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = -2 
Query: 1957 MDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV*VNFM 2085
            MDTNNW STPPSGEPT DTGDWRTQLQP SRQRI+NK+   FM
Sbjct:    1 MDTNNWRSTPPSGEPTTDTGDWRTQLQPDSRQRIINKIMETFM 43
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: B9SWU1_RICCO (Transcription cofactor, putative OS=Ricinus communis GN=RCOM_0011080 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.449e-56
Identity = 123/180 (68.33%), Postives = 146/180 (81.11%), Query Frame = -3 
Query:  642 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNT------GDNSIPPDPG-SQGMQNQVHSQGQS--IPIXXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQ----NSLGQGMSSNMFAN 1142
            M+TLKRHLPFSGQEGL EL+KIAVRFEEKI+TAATSQSDYL++ISLKMLTME+KSQN VPN+      G+N+ PPDPG SQ MQ QVH+QGQS  +P+S    Q++ QLL Q++ NNMAS G+QSSAGL S +P VSGL Q  +PNVVGQN+NMQN+SG+ Q    NSLGQG+ SNMFAN
Sbjct:   39 METLKRHLPFSGQEGLEELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNNVPNSVPPNPFGNNNRPPDPGASQSMQPQVHNQGQSLPVPLSANQTQTRQQLLSQNIQNNMASTGIQSSAGLTSALPPVSGLAQTSIPNVVGQNSNMQNISGVPQNSAGNSLGQGVPSNMFAN 218
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Match: Q8H6Q7_PONTR (CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 5.151e-54
Identity = 119/179 (66.48%), Postives = 148/179 (82.68%), Query Frame = -3 
Query:  642 MDTLKRHLPFSGQEGLNELRKIAVRFEEKIFTAATSQSDYLKRISLKMLTMENKSQNTVPNT------GDNSIPPDPGSQGMQNQVHSQGQS--IPIXXXXXXXXXXXXXXSVPNNMASAGVQSSAGLQSGMPAVSGLTQNPVPNVVGQNTNMQNMSGISQ----NSLGQGMSSNMFAN 1142
            MDTLKRHLPFSGQ+GLNEL+KIA RFEEKI+TAA+SQSDYL++ISLKML+ME+KSQN +PN+      G ++ PPDPGS  MQNQVH+QGQS  IP+S   +Q + QLL Q++ NNM+SAGVQ S+GL S +P+VSGL+Q+P+P+VVGQ  NMQNMSGISQ    NS+GQG+ SN+FAN
Sbjct:   54 MDTLKRHLPFSGQDGLNELKKIAGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPGS--MQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMSSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFAN 230

HSP 2 Score: 71.633 bits (174), Expect = 1.915e-9
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = -2 
Query: 1972 FCNWELFVA----NLMDTNNWMSTPPSGEPTMDTGDWRTQLQPVSRQRIVNKV 2118
              N E+  A    NLMDTNNW  TPP GE  +DTGDWRTQLQP SRQRIVNK+
Sbjct:    1 MTNTEIIGAKSYKNLMDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKI 53
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
MD15A_ARATH1.813e-3150.89Mediator of RNA polymerase II transcription subuni... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0093432 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2T4M4_GOSRA3.415e-8592.64Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RIW5_GOSRA3.469e-8592.64Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0PQG8_GOSAR1.617e-8297.60Putative mediator of RNA polymerase II transcripti... [more]
A0A061G942_THECC2.229e-7384.02Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
A0A061G947_THECC4.308e-7283.33Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
A0A0D2RZQ6_GOSRA4.067e-7182.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TIP0_GOSRA6.857e-7182.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RED2_GOSRA1.084e-6390.14Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9SWU1_RICCO4.449e-5668.33Transcription cofactor, putative OS=Ricinus commun... [more]
Q8H6Q7_PONTR5.151e-5466.48CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1[more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0093432 ID=g.barbadense_cottongen_reftransV1_0093432; Name=g.barbadense_cottongen_reftransV1_0093432; organism=Gossypium barbadense; type=contig; length=2302bp
TGATATAGCTGTTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCATATTTGG
AAGACTATTGGCCTGGCCTAGCAACCTCTGCTGCTGCATGTCTGCAATGC
TGTTTTGTTGTCCTATTAATTGATTCTGCTGTGAATTTGCAGCATTTGCC
TGTTGTCCCACAATGTGTGGCTGCTGATGCTGTGGCTGTGGAGGCTGATG
CTGATGCTGCTGCTGAGGCATCATTGACTGCTGTGTCATTGGTGTTTGTT
GTTGATGAATACCACTACTAGCGGCCTGTTGTGCCTGTTGCTGCTGTCTA
AACTGTTGATGCTGCTGAAGCATGGACTGACTTGACTGTTGTAAAGAAGA
TTGCTGATTGTGTTGAAGACCAGGGAGAGGAGTCGATTGCATGGAAGATT
GCTGTATAACAGATGATGTTTGCATACCGGATTGCTGAGAAGATTGCAAC
TGAGTAGGTGGTAACAGGTTCTGCTGTTGCTGCATGTGAGACTGCATAAG
TGAGGGCTGAAGATTTCCCTGTTGCATCTTTTGTTTCATAAGTTGATTTT
GTAACTGCTGATGGTATAACTGCTGCTGTTGCTGTTGCTGTTGCTGTTGC
TGTTGTGGAAGCACCTGTTGCCTTGGCATTTGCCGCTGCTGATTAGCAAA
CATATTGGAAGACATCCCTTGCCCCAATGAGTTCTGTGAAATTCCAGACA
TGTTCTGCATGTTGGTATTCTGGCCAACAACATTAGGTACAGGATTCTGG
GTTAGACCAGAGACGGCAGGCATTCCAGATTGTAAACCAGCAGAACTTTG
AACTCCAGCAGACGCCATGTTATTCGGGACACTCTGGGGTAACAGTTGTG
CTTGAGATTGATTACTTTGTAAAGAGATAGGAATTGATTGCCCTTGACTG
TGAACTTGGTTCTGCATGCCCTGAGAACCTGGATCAGGCGGTATGCTGTT
ATCCCCTGTGTTGGGTACAGTATTCTGAGACTTGTTCTCCATTGTAAGCA
TCTTCAAAGATATTCTCTTTAGGTAATCAGACTGGCTGGTTGCTGCAGTA
AAAATCTTTTCCTCAAACCTTACAGCTATTTTCCTGAGTTCATTTAAACC
CTCTTGACCAGAAAATGGAAGGTGCCTCTTCAGTGTATCCATTCTACGTA
CATAGGGCATTGCATGAGTTATGATCACACAAATATGATACATGAGAGAA
GCTTCAAATGCTACATAAATGAATGTTACGGACCAAGTTGTCAGGTTTGT
AAAGCAACACAAAAATCAAATGAAAAATAACCAGGATATAATATAAGAAC
CACAAAATTCTCCTTCCTAACTTTCTTAGGGCAGTCACATTTAAATATCA
TGAAGCCACAACATTGGATTTAACAAAGTTCACCCAAAATAAACTATGAC
TATCATGGCCTTCATATATCAGTTACATTCAGATAGACCACAACCATAAT
TGCCATTGTTCGGATCACAATGTAGAAAGGCAGCTCTGCTAGTGTCAATT
ACAGCAATAAGTTATTTAATGAATAGTCATAATTCAGTCAGTAAGAACAA
AAGAGAACCACCAATCCATACTCCGCTTGAATGAGATAACAGGTCCCAAG
CTTAAAAGGAGCCAAAGATATAAAAGCAAATTGCATCCTTATTCAATCAC
ATAAATTCGTTAAATGCTGAATCTGAATATGCATAAAGTTGGACACAATA
GCTCAGCCACATGCCCCCATCAGGTTCCAGATATGTGGTCCATATATTTT
TTGTACCCAAACTCATGTTAAGACTAAAAGAGCAAGCTTTGGTTCTCAAG
CCATGTATTTACAAAACAAAGAAAACACGTTGGAAGAGGAAAAAAGGCGT
AATTAATGGGAATGTTTGGTTCATAACAATACTAACTAAGACTACGGACA
ACATGCCAAATACTCCCAGCAAGTTAAGTATAAGTATACTTCACCGAAAA
TAGTATCATAAAATTCACTTACACCTTATTGACGATTCTCTGTCGTGAAA
CTGGCTGCAACTGGGTTCTCCAATCACCTGTGTCCATGGTGGGCTCTCCA
CTGGGAGGAGTAGACATCCAGTTATTGGTATCCATCAAATTCGCAACGAA
GAGCTCCCAATTGCAGAAGAGAGATCCGCCTCCAAAATTCCTCAAGGATT
TTTCTCAAACACCAAATCCCCAGACTGAACTAAACACACACGTCCGGTTC
TCTTCGATTATACAGAAAGAAAATTTTAAGTTTTTTGTTTTGTGCTTCTG
AAAGATAATCAGAGGCTTCTTTTATTTTCAGAGAGTATGAATAATACAAA
AG
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