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Analyses
This contig is derived from or has results from the following analyses
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 48..53 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 7..24 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 25..29 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 78..100 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1..6 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 54..77 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 30..47 |
| None | No IPR available | TMHMM | TMhelix | | coord: 54..76 |
| None | No IPR available | TMHMM | TMhelix | | coord: 30..47 |
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093387 ID=g.barbadense_cottongen_reftransV1_0093387; Name=g.barbadense_cottongen_reftransV1_0093387; organism=Gossypium barbadense; type=contig; length=2503bp
GACCTCTGACAAATCCATCATTTGCAAATTCCCAACGATCGCTATCAATT
TTTCTAAAACCCTGGAAAAACTTTCAAGTGTTACTACTTGTCAATGTCTT
CAATAATGGTTAGTAATTCAAAAAGAAAACAGCCATGCATTACACACCCC
CTCCTCCCAAAAAAATTGTATTCTAATGCAATCGGACAGATATACAGGCA
TGTATAATACACACGTACAAAGATGCTATAATTGCTCACTAAATCAAACT
GCTTCATTTGTACCATAAGCAAATGTATCCTGAGTATCAAGATTTCTGGT
TTATTAATCCACTAGTATTGCCGGTTGACAGAAATGACAAGAGGTACATA
ATATAGGTCAACCGTGCCTCTAATTATCTAATGATACTGCATCCATCTAT
GTTGCTTTGACTCTTATTATTTTTCGAAGCACCCATGTCTGGCATTCATG
CCTGGCACATAACCAAACATGGGTATGGGACATAACTCTCCATGAACCCT
CTAGATACGCAGAAATACTTCAGAACAAAAATTGAACACTCCCTTATCCA
ACACTTACGTCCAAGTAATATAGGTATAAGCTCATGTATCAGATACGAAC
TAAGCTGCCTACCTGCTTAGACTCGGCATAAAACATTTAAATTCAGCATT
TTATGGGCTTGTGTGATTCAAAATGTCAAATTAATGCCCTAGACAGCAAA
ATCCCGCACAAACAGCACAACCATTAAGGATTCCATTGTTTGAAAGTTGC
CCTAATCGAGAATGATTTAGTGAGAAACCTTCTAGTCCAGAAGCAATTAC
TTTAGTACATCATGTAAAAGTTTATTGTTCATGGTTACAACAACTATCAG
TTGTAAACGAAGAAAATTCATTAGTCGACCAAGCCCAGCCTATATGTTCG
GACCTTTATTTTCATATTCAATAGATTTAACTAATGAAAAGGCACTCTGA
GGCTATTGAAACTCATTTGACGAATACTTCATGGTGGAACAGATCTAAAA
GGGGATCCTTTATCAATCAGCAGAACATTCAAAAACAATGAGAGACCGGA
AAAAACAAGAGGAAAGACCGAGATAATGTCAACCAAAATGCCAGCGGAAA
AGGGGCAAAAGTAGTTAAAGACTCTGCCTCTTTTACCACCTACAACAAAG
TACAAAATCAAGATGGAAAAAGTCGAACAAAGTTGCAGAAATACCTTATG
ATTACCTTCTAAATAATCATGAAATAAATCACTGAAAATAAACCACTGAA
AAAGTATCAAGAACTTAAACGAATAAATCATTTCATTCTGCTAACACAAA
TAAGAACCAAATAGAGCAGGAAAACAAGAGGGCAGATGACAGTTGGAAAA
TAGCAGTTGGATAAAATAATTTCAACAACTTTTTCCAAAATCTAACCAAA
AGGGCATTAGACAACATTTAGATGTTGCTCATTGTTAAAACTCTGATATT
AGCCATGAATGGCACTAAAGTGCCCTATCAACACAAAGAAATTCCTAATT
TGAATTATGCTTAATCACCATTTATCACTCTGCAACTCGCGAATCGCACT
TCAGGGTGTATTGTCAGTGTATTCTTCCTAACAGTTAGTCTATGAACTTT
TTAAAAACGGTATAGAGAATCATAATGATGATGAATACAAGGCAAGAACT
TTAGAGTTCCACCGAAAGCTGACATTTACTATCTCTTTTAACATGTAGTC
CTGAATTAGGCACACAATATCAGGATACAAAGCAAATAATTCCCCCTTTT
GGTACCAACAAGAAATTTTACACTGTGATTTCGATTGAATCGAATCATTC
CCATGAAAATGAAAGGATCAACTAACAAAACTTAGTCATAGTCAAGCTTT
GTTAGGCCTAAGATAGATAAATAAATAAAGAAGTCCAACGAAGCCAACCA
TTTTTACTCTCATAAATCCAATCAATCAAACAAAAAAATTGAGCAAACAT
TCAACCTAACTGCTAGTGGTAGCGTATAGTCCTTTCCTCATCATTGCTAC
GTATTGAAACCAAGCCAAGAATCTCTACAAATTTAAATTCCGAAACTTGA
ATTCCCACTACTTAGAATATAACCCCAAGACTGCAAAGTGAACACCAAAA
TCAAGCTCTCACAAGCAAAGAACCGAACTCAAAACCACAAATAAAGCAAT
ATTAACAAAATCCCAAATATTCAAAACAATAAAAATTCCAGCACAGATGT
ACCAAAGAACCCGATTCAGAACTCCAAGAACCCAAACACACACACACAAA
AAGGAGAGAAAGAAAGAAACCAATTTTGACGTGTTTTAAAAAGGAAGGAG
GAGGAGGAGGAGGAGGATAGAAATGTGCGTTTTCAACGCCAAATGATGCG
TCTTATTTGTAAAGCTGAAGCACGAGGAGTCTAAGGTATTTTTCTTGTAT
ACTATGAAAACGTCGGTCGCTCATGCTTCGTGTTTGCCTCTTCCTTTTTT
CTTTTAATTGTTATTTATTAATGTTGTAAGAACCAGAAGTGCTCACATTC
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