g.barbadense_cottongen_reftransV1_0093370, g.barbadense_cottongen_reftransV1_0093370 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0PN82_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06565 PE=4 SV=1) HSP 1 Score: 408.297 bits (1048), Expect = 7.325e-131 Identity = 193/197 (97.97%), Postives = 195/197 (98.98%), Query Frame = -1 Query: 232 LLFQFFSAFPWLRESTEINSHVIPVDQDHRNLPTRETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFSFFPTHVEWD 822 L +FFSAFPWLRESTEINSHVIPVDQDHRNLPTRETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYF+FFPTHVEWD Sbjct: 186 LKTKFFSAFPWLRESTEINSHVIPVDQDHRNLPTRETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFAFFPTHVEWD 382 HSP 2 Score: 219.55 bits (558), Expect = 4.690e-61 Identity = 112/126 (88.89%), Postives = 114/126 (90.48%), Query Frame = -3 Query: 1547 EKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSM 1924 EK VE IVKVLKDRIDRKMKN KMA MESVILVVRTMMANNASHLLPEVLG+LKQIK QWPVRSDIQTEKQ LQLIK SYK+ VLTE AKNEL AVG KIEGLDEQRLKDLTNTDNLNAIFSGSM Sbjct: 54 EKPVETIVKVLKDRIDRKMKNDKMAGMESVILVVRTMMANNASHLLPEVLGSLKQIKKQWPVRSDIQTEKQNLQLIKKSYKDKVLTEEEAKNELFAVGMKIEGLDEQRLKDLTNTDNLNAIFSGSM 179 HSP 3 Score: 33.8834 bits (76), Expect = 4.690e-61 Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = -1 Query: 1954 KRRRREGISDTGEASTSEKHP 2016 KRRR +G SDT ASTS+KHP Sbjct: 20 KRRRHQGTSDTDVASTSKKHP 40 HSP 4 Score: 32.7278 bits (73), Expect = 4.690e-61 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = -2 Query: 2016 MSSRRKKNKELASDNFPEK 2072 MSS RKKNKELASDN PE+ Sbjct: 1 MSSGRKKNKELASDNSPEE 19
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0PUE7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_13079 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.629e-29 Identity = 69/124 (55.65%), Postives = 85/124 (68.55%), Query Frame = -1 Query: 262 EVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYF 633 EVL S L +L +QLYD++N +V D+ GL+ ALK T WG+ P+YL+P+A RIEKARG+ T H + + VCAA+KEMEE +E WD LKKW ATLN AKK GF V FAD LL L AY Sbjct: 390 EVL-SKLRDLENQLYDKDNNKVEYKDFLGLEQALKKTAWGKTPNYLQPIAIRIEKARGKATDVFHIPAQVPVCAAIKEMEEFPVEDLDWDTLKKWGATLNYAKKYGFQVGFADKLLKKNLLAYL 512 HSP 2 Score: 64.3142 bits (155), Expect = 2.699e-7 Identity = 47/128 (36.72%), Postives = 62/128 (48.44%), Query Frame = -3 Query: 1604 VEKIVKVLKDRIDRKMKN-GKMADMESVILVVRTM--------MANNASHLLPEV---------------LGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQ 1915 +KI K DR R++ N GK+ D E + R + M AS L +V L + QIK QWP++SD+ KQ++Q I +K+ VL E AK LL VGEKIE LD Q Sbjct: 234 AQKIGKFYDDRTQRRINNNGKITDWERKLNWERKLEGMKKMATMVTKASQCLDDVPIVTKFTGMKGSQQILCYIDQIKMQWPMQSDLLVIKQEIQEIDRKHKDAVLAEDEAKWRLLLVGEKIEELDRQ 361
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0P3D7_GOSAR (Coiled-coil domain-containing 27 OS=Gossypium arboreum GN=F383_24365 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.425e-28 Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = -3 Query: 1556 ETSTGKQFGRACREKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFS 1963 E ST +Q R + K+V KV KDRI R++KN AD + +I +V MMA NASHLLP VLG+L+QI TQWP+R D+Q KQK+Q I+S+YK+ LT+ AK L+ VG+++E LD++RLKD T NL+A+F+ Sbjct: 120 EPSTSRQQERF-KGKTVAGRAKVYKDRISRRIKNDTKADKDVIIWIVCKMMAINASHLLPRVLGSLEQINTQWPIRPDLQHIKQKIQEIESNYKDDSLTD-EAKRRLVEVGDELERLDQERLKDSTKAGNLDAVFT 253 HSP 2 Score: 115.546 bits (288), Expect = 7.672e-24 Identity = 68/151 (45.03%), Postives = 94/151 (62.25%), Query Frame = -1 Query: 262 LSNFSTETNGLVSPV-DQGNGGFVSFEVLR-SNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYF 708 +S S+ L S V DQ +G + E L+ S + L ++LYD++NK+V ++D+ GL+ AL + PDYL PVATRI+ RG T + +LVCAA+KEMEE++++ W LKKWAATLN AK F V FA+NLL L +YF Sbjct: 320 ISYLSSTWPWLFSAVQDQDHGSLFTCEELQYSTVSELENELYDKDNKKVDVTDFHGLEQALNNILCFETPDYLNPVATRIQNVRGTDTDFCYHNIQVLVCAAIKEMEEVSIKELNWHTLKKWAATLNQAKGLDFEVGFANNLLQKNLCSYF 470
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NGG6_GOSAR (Pentafunctional arom polypeptide OS=Gossypium arboreum GN=F383_16071 PE=4 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.462e-27 Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = -1 Query: 259 DQDHRNLPTRETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFS 747 D ++ +LPT + S L Q G +SFE S + I+QLY+ +N +V D+ GL+ AL +T WG+ PDYL+ + RIE ARG+ T H +LVCA +KEME ++LE W LKKW A LN A + GF V FA+NLL + AYF Sbjct: 145 DSENASLPTEQNEFS--------LSCAPAQDRGSCMSFE---SKFVHFINQLYNNDNSKVEYKDFQGLEDALANTAWGKVPDYLKSIGIRIEDARGKATGFFHTGIQILVCAVIKEMEHMSLEDLDWGTLKKWTAALNYANEHGFQVGFANNLLQWNVVAYFQ 296
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0M7T1_GOSAR (Germacrene D synthase OS=Gossypium arboreum GN=F383_37222 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.337e-26 Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = -1 Query: 265 DQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDT-GWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAY 663 DQ +G + E ++S L +L +QLYDENN +V + D++GL+ ALK T G PDYL P+A +IE+ARGE T H + VCAA+KEM++L + DMLKKWAA LN A++ GF V FAD+LL AY Sbjct: 112 DQDHGSLSTLEGIQSLLKSLENQLYDENNNKVSVKDFEGLEEALKKTNGLDLLPDYLRPIANQIEEARGEATGIAHSYVQVFVCAAIKEMQDLAP--VEMDMLKKWAAALNYARQYGFQVTFADHLLRKNFDAY 243 HSP 2 Score: 65.0846 bits (157), Expect = 2.529e-8 Identity = 32/83 (38.55%), Postives = 54/83 (65.06%), Query Frame = -3 Query: 1532 VLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCVHF 1780 + + KQIKT+WP+R D+Q+ QK+Q IK+ +K+ +LTE EL V +K+ LD++R ++ T +L+A+FS + C + Sbjct: 21 IPASFKQIKTRWPMRPDLQSILQKIQDIKAKFKDHLLTEDKVNEELDTVEDKLNELDQKRSEE--QTRDLDAVFSNAKFCSAY 101
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NNU8_GOSAR (Pentafunctional arom polypeptide OS=Gossypium arboreum GN=F383_19151 PE=4 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 2.610e-26 Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = -1 Query: 262 DQDHRNLPTRETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYF 747 D ++ +LPT + S L Q G +S E S + I+QLYD +N +V D+ GL+ AL +T WG+ PDYL+ + RIE ARG+ T H +LVCA +KEME+++L W LKKWAA LN A + GF V FA+NLL + AYF Sbjct: 145 DSENASLPTEQNEFS--------LACAPAQDRGSCMSSE---SKFDHFINQLYDNDNNKVEYKDFQGLEDALANTAWGKVPDYLKSIGIRIEDARGKATEFSHTGIQILVCAVIKEMEDMSLGDLDWGTLKKWAAALNYANEHGFQVGFANNLLHRNVVAYF 295
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0D2R562_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G370000 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.561e-25 Identity = 63/142 (44.37%), Postives = 92/142 (64.79%), Query Frame = -3 Query: 1538 ETSTGKQFGRACREKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSMVCV 1963 E+ST + + K+V + KV KDRI R++KN K AD + +I +VR MMA NASHLLP V G+L+QI TQWP+R D+Q KQK+Q I+ K+ T+ + + V ++E +D++RLKD T NL+A+F+ S C+ Sbjct: 79 ESSTSR-LQECLKGKTVAGMAKVYKDRISRRIKNDKEADKDVIIRIVRNMMAINASHLLPRVFGSLEQITTQWPIRPDLQRMKQKIQEIE---KDDSSTDEAKRRIFVEVEYELERIDQERLKDSTKAGNLDAVFTLSSACL 216
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NTP5_GOSAR (Phosphate acyltransferase OS=Gossypium arboreum GN=F383_00140 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.722e-24 Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = -1 Query: 256 TETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDTGWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEE-LTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFSF 693 TE N + PVDQ +GG ++ E+L+ N + S L++++N V ++ + GLQ AL T +G PDYL+ + T IE RGE T HK +LVCAA+KEME+ T + S + LKKWAATLN+ K+ F V+FAD L+ A +++ Sbjct: 437 TEMNNVTIPVDQDHGGLLAREILKCNYSSWHSGLFNKDNNSVEVAHFHGLQQALDKTRYGETPDYLKHIVTLIEVDRGEATKFGHKNIEVLVCAAIKEMEDWRTPKDSGCNQLKKWAATLNMGKEQDFEVKFADEKLMNISLACYAY 583
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0D2PKA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G370000 PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 3.940e-24 Identity = 61/136 (44.85%), Postives = 89/136 (65.44%), Query Frame = -3 Query: 1556 ETSTGKQFGRACREKSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFS 1963 E+ST + + K+V + KV KDRI R++KN K AD + +I +VR MMA NASHLLP V G+L+QI TQWP+R D+Q KQK+Q I+ K+ T+ + + V ++E +D++RLKD T NL+A+F+ Sbjct: 79 ESSTSR-LQECLKGKTVAGMAKVYKDRISRRIKNDKEADKDVIIRIVRNMMAINASHLLPRVFGSLEQITTQWPIRPDLQRMKQKIQEIE---KDDSSTDEAKRRIFVEVEYELERIDQERLKDSTKAGNLDAVFT 210
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Match: A0A0B0NH86_GOSAR (HemA OS=Gossypium arboreum GN=F383_17699 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 6.152e-24 Identity = 70/155 (45.16%), Postives = 90/155 (58.06%), Query Frame = -1 Query: 256 ETLLSNFSTETNGLVSPVDQGNGGFVSFEVLRSNLCNLISQLYDENNKEVGISDYDGLQLALKDT-GWGRPPDYLEPVATRIEKARGEPTADIHKVSLLLVCAAVKEMEELTLEYSKWDMLKKWAATLNVAKKSGFIVEFADNLLLTKLFAYFSF 717 +TL+ FS+E L S DQ S L + +L +QLYDENN +V D++GL+ ALK T P YL+P+A +IEKA GE T H LLVCAA+ EM+E ++ W+ LKKW ATLN A++ GF V FAD LL AY F Sbjct: 327 KTLIEKFSSEFPWLFSQ-DQVQE---SLSTLGAQFKSLENQLYDENNNKVSFKDFEGLEEALKKTNALDLLPGYLKPIANQIEKAHGEATGIAHAYIQLLVCAAINEMQESAVKSLNWETLKKWGATLNYARQLGFQVSFADELLRKTFGAYVCF 477 HSP 2 Score: 63.1586 bits (152), Expect = 5.210e-7 Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = -3 Query: 1469 QFGRACRE-KSVEKIVKVLKDRIDRKMKNGKMADMESVILVVRTMMANNASHLLPEVLGTLKQIKTQWPVRSDIQTEKQKLQLIKSSYKNGVLTEGNAKNELLAVGEKIEGLDEQRLKDLTNTDNLNAIFSGSM----VCVHFRSVFLLHWTKSLFHQSYSDLA 1945 QF C + +SV K +K+LKDRI R+ K D+E ++ + + A S +P + QI+ +WP+R D+Q QK+Q IK+ K+ VLTE + EL V ++++ L +R K+ +L+A+ M + F S F +++ +S S L Sbjct: 196 QFPEVCSDSRSVRKRMKILKDRIHRQKMADKRTDLELLLWMKLKLKAFPVSLQIP---ASFNQIRNEWPMRPDLQIILQKMQDIKAKSKDLVLTENDMNGELGIVIQELDTLRARRSKE--QERDLDAVLDTDMGTKTLIEKFSSEFPWLFSQDQVQESLSTLG 354 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0093370 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 17
Pagesback to topSequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0093370 ID=g.barbadense_cottongen_reftransV1_0093370; Name=g.barbadense_cottongen_reftransV1_0093370; organism=Gossypium barbadense; type=contig; length=2517bpback to top |