g.barbadense_cottongen_reftransV1_0092932, g.barbadense_cottongen_reftransV1_0092932 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092932
Unique Nameg.barbadense_cottongen_reftransV1_0092932
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2813
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: M5W9S3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008324mg PE=4 SV=1)

HSP 1 Score: 524.628 bits (1350), Expect = 2.170e-175
Identity = 255/332 (76.81%), Postives = 293/332 (88.25%), Query Frame = -2
Query:  332 RYFETLQKELAPYDCVLYEMVASRESLENRR--NPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYADKA 1321
            RYFETLQKEL  YDCVLYEMV SRESLENRR    +   ++K SRS+GFNILGCIQRQMAR L L+FQLDCLDY+++NWYHADLD+ETF+LLQ EKGESFFTFARDMT++STKA++Q A+IP+ L PWRSKL WA+RVLPMPLVGLLII GVCAD GS+ S +PE EALSRLDFGAAMKVFLAKRLTSEFTQ TADVEE SVIIGERNRAA +ALR+A++ G+N+IAILYGGGHMPDLGRRL +E +L+P++  WI+AWSI KQDL S+SLPFLK MAEVSGWPLNRYQTLALLIFSSVLALDLWFWELF GTAVNW  ++AS+V++Y D +
Sbjct:    3 RYFETLQKELESYDCVLYEMVTSRESLENRRILAATKRLKVKGSRSKGFNILGCIQRQMARFLTLDFQLDCLDYESENWYHADLDFETFQLLQQEKGESFFTFARDMTVRSTKAMIQTATIPEGLGPWRSKLKWAARVLPMPLVGLLIIGGVCADTGSEDSEFPEFEALSRLDFGAAMKVFLAKRLTSEFTQATADVEESSVIIGERNRAAMDALRKAIDGGNNRIAILYGGGHMPDLGRRL-QELELIPTQAQWISAWSIRKQDLNSSSLPFLKKMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFFGTAVNWSYQLASQVSEYIDNS 333          
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: A0A022Q5Y3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006454mg PE=4 SV=1)

HSP 1 Score: 514.998 bits (1325), Expect = 6.004e-170
Identity = 255/333 (76.58%), Postives = 287/333 (86.19%), Query Frame = -2
Query:  338 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIP-DDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYAD 1333
            I D  YF+TLQ+ L PYDCVLYEMVASRESLENRRNP A K+ K S SRGFNI+G IQRQMA++L L+FQLDCLDY++ NWYHADLD+ETFKLLQ EKGESFFTFARDMTLKSTKA+V P + P +DL PWRSKLLWASRV+PMPLVGLLII  VCAD G   S YPELEALSRLDFG AMKVFLAKRLTSEF+ VTADVEEKSVIIGERNRAATEAL +A++ G NKIAILYGGGHMPDLGRRLRE+FDLVPS+V WITAWSI  ++L S S P LK +A+V GWPLNRYQTLALLIFSSVLA+DLWFWELF  T+V+W+S + S++ Q+ D
Sbjct:  106 IADKEYFDTLQEVLEPYDCVLYEMVASRESLENRRNPEATKKPKGSSSRGFNIIGFIQRQMAKLLTLDFQLDCLDYESKNWYHADLDFETFKLLQQEKGESFFTFARDMTLKSTKAMVMPTTPPREDLGPWRSKLLWASRVVPMPLVGLLIIGSVCADVGGD-SEYPELEALSRLDFGGAMKVFLAKRLTSEFSMVTADVEEKSVIIGERNRAATEALHQAIDSGKNKIAILYGGGHMPDLGRRLREDFDLVPSQVQWITAWSIRDKNLSSRSFPVLKRLAQVFGWPLNRYQTLALLIFSSVLAVDLWFWELFFDTSVSWVSNVGSDLLQFFD 437          
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: W1NSC2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00109p00030850 PE=4 SV=1)

HSP 1 Score: 503.442 bits (1295), Expect = 3.172e-165
Identity = 250/335 (74.63%), Postives = 286/335 (85.37%), Query Frame = -2
Query:  344 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNP---XXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSN--SLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQY 1333
            I D  YF TLQKEL  YD VLYEMVASRE+LE+RRN     ++ +LK SRSRGFNILGCIQRQMAR L L+FQLDCLDYQ D WYHADLD+ETFKLLQLE+GESFFTFARDMT++STKA+VQPA++P++L PWRSKLLWASRVLPMPLVGLLII  VCA     ++ YPE +ALSRLDFGAAMKVFLAKRLT+EFTQ TA+VEEKSVIIG+RNR A EAL+RA++DG  KIA+LYGGGHMPD+GRRLRE+FDL PS V WITAWSI  QD+QS   SLPFLK +AE+SGWPLNRYQTLALLIFSSVLA+DLWFWELF  + VNW ++ ASE+  +
Sbjct:  127 IADKEYFATLQKELETYDRVLYEMVASRENLESRRNARDLKSSTKLKGSRSRGFNILGCIQRQMARALALDFQLDCLDYQGDKWYHADLDFETFKLLQLERGESFFTFARDMTIRSTKAIVQPATVPEELGPWRSKLLWASRVLPMPLVGLLIIGSVCAPADKPSTEYPEWKALSRLDFGAAMKVFLAKRLTTEFTQATAEVEEKSVIIGDRNRVALEALQRAIDDGCQKIAVLYGGGHMPDMGRRLREDFDLAPSHVSWITAWSIGNQDVQSKNQSLPFLKALAEISGWPLNRYQTLALLIFSSVLAIDLWFWELFFSSLVNWAAQAASEIPHF 461          
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: A0A087G8J6_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G215400 PE=4 SV=1)

HSP 1 Score: 503.056 bits (1294), Expect = 4.599e-165
Identity = 248/338 (73.37%), Postives = 288/338 (85.21%), Query Frame = -2
Query:  323 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQ-DLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYADKARVM 1333
            I D  YF+TLQKEL PYD +LYEMVAS+E LENRRNP AAKRLKSSR RGF+ILG IQRQMAR L L+FQLDC+DY+A+NWYHADLDY+TF+LLQ+EKGESFF+FA+DMT++STKA++QPAS  + LDP RSKL W SRV PMPLVGL +I   CAD  +Q S+YPELEALSRLDFGAAMKVFLAKRLTSE TQVT+D+EEKSVIIGERNRAATEALR+A+  GHN+IAILYGGGHMPDLGRRLREEFDLVPS V W+TAWSI    DL++ S P L+ MAEV  WPLNRYQTLALLIFSSVLALDL FWELF  + ++W S+I +E+ +  D A+++
Sbjct:  123 IADKEYFDTLQKELEPYDSILYEMVASKEVLENRRNPIAAKRLKSSRPRGFSILGFIQRQMARTLTLDFQLDCMDYEAENWYHADLDYDTFRLLQIEKGESFFSFAKDMTIRSTKAIMQPASTTEGLDPLRSKLRWVSRVFPMPLVGLFLIGAFCADFETQTSDYPELEALSRLDFGAAMKVFLAKRLTSELTQVTSDIEEKSVIIGERNRAATEALRKAIEQGHNRIAILYGGGHMPDLGRRLREEFDLVPSEVRWVTAWSIRNPLDLETTSFPILRRMAEVLRWPLNRYQTLALLIFSSVLALDLCFWELFFDSTIDWASQIGAELYRIVDNAKIV 460          
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Match: I3T6N1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 498.434 bits (1282), Expect = 1.971e-163
Identity = 244/331 (73.72%), Postives = 281/331 (84.89%), Query Frame = -2
Query:  341 IGDCRYFETLQKELAPYDCVLYEMVASRESLENRRNPXXXXXXXXXXXRGFNILGCIQRQMARILMLNFQLDCLDYQADNWYHADLDYETFKLLQLEKGESFFTFARDMTLKSTKALVQPASIPDDLDPWRSKLLWASRVLPMPLVGLLIISGVCADGGSQASNYPELEALSRLDFGAAMKVFLAKRLTSEFTQVTADVEEKSVIIGERNRAATEALRRAVNDGHNKIAILYGGGHMPDLGRRLREEFDLVPSRVHWITAWSITKQDLQSNSLPFLKMMAEVSGWPLNRYQTLALLIFSSVLALDLWFWELFCGTAVNWISEIASEVAQYA 1333
            I D  YF  LQKEL  YDCVLYEMVAS+++LE  RNP A KRLK S++RGFNI+GCIQRQMA+IL L+FQLDCL+YQ++NW HADLDYETF+LLQ  KGES F+FA+D TL+STKA++QP SIP+DLDPWRSKLLWASRVLPMPLVGL +I  VCA+ GS AS YPE+EALSRLD  AAMK+FLAK LTS+ TQ TADVEEKSVIIGERNR A E LRRA++ G NKIAILYGGGHMPDLGRRLREEFDLVP  V W+TAWSI K+ L ++SLPFLK MA  SGWPLNRYQTLALLIFSS+LA+DLWFWELF GT V W+S++ +E+ +Y 
Sbjct:  120 IADEEYFLALQKELESYDCVLYEMVASKKTLEKMRNPKAKKRLKRSQTRGFNIIGCIQRQMAQILKLDFQLDCLNYQSENWQHADLDYETFQLLQEAKGESLFSFAKDTTLRSTKAMLQP-SIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKLFLAKSLTSDLTQNTADVEEKSVIIGERNRVAIENLRRAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPYGVEWVTAWSIRKRKLDTSSLPFLKTMARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTMVTWVSDVTTEILRYV 449          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of g.barbadense_cottongen_reftransV1_0092932 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5W9S3_PRUPE2.170e-17576.81Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A022Q5Y3_ERYGU6.004e-17076.58Uncharacterized protein OS=Erythranthe guttata GN=... [more]
W1NSC2_AMBTC3.172e-16574.63Uncharacterized protein OS=Amborella trichopoda GN... [more]
A0A087G8J6_ARAAL4.599e-16573.37Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
I3T6N1_MEDTR1.971e-16373.72Uncharacterized protein OS=Medicago truncatula PE=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35757FAMILY NOT NAMEDcoord: 1..317

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092932 ID=g.barbadense_cottongen_reftransV1_0092932; Name=g.barbadense_cottongen_reftransV1_0092932; organism=Gossypium barbadense; type=contig; length=2813bp
GAGTAAAAAAAATAACTTACTGATAGTTAGATGAGTACTAAATATAATAT
CAACACAAGCATGCACATAAATTTGCAAAGCGAACCTATTTGATCAATTA
GTTTATTCTTCCACTATGAATGAGTTCAATAAACTTGCTACTTTTACATT
TTTTCTTTTTTCCCTAACATCAGTTATATCCGAAACTCGAAATTCGAAAC
TTGAAACTCGAAACCCGAAACCCGAAACCTGAAACCCGAAGTGTTCATAT
TTACACCGGTACGAATATATATACGTATCCGTGTTGAATGTCAATCGAAA
CAATATATCCAAATAAGGCTCACATCACCCGTGCTTTATCTGCATATTGA
GCAACTTCCGATGCTATTTCAGAGATCCAATTAACCGCGGTGCCGCAAAA
GAGTTCCCAAAACCAGAGATCCAATGCGAGGACCGAGGAAAAGATGAGTA
ATGCCAATGTCTGGTAACGGTTCAATGGCCAGCCGGAAACTTCAGCCATC
ATCTTCAAAAACGGAAGGGAATTGCTCTGGAGATCTTGTTTCGTAATGGA
CCAAGCTGTTATCCAATGTACTCGGGAAGGAACAAGGTCGAATTCCTCTC
TTAAACGCCTACCTAAGTCCGGCATGTGACCACCCCCATAGAGTATTGCT
ATCTTGTTATGACCATCATTGACCGCTCGTCTCAATGCTTCTGTTGCAGC
CCTGTTCCTCTCGCCGATGATAACCGATTTCTCTTCCACATCGGCTGTCA
CTTGAGTGAACTCGGAGGTTAGTCGTTTTGCCAGGAAAACCTTCATGGCG
GCACCAAAATCAAGCCTTGATAAAGCTTCTAGCTCGGGATAATTGGATGC
TTGGCTTCCTCCATCAGCACAAACACCGCTAATAATAAGAAGACCAACGA
GTGGCATAGGTAGCACACGAGAAGCCCATAGAAGCTTGGATCTCCAAGGA
TCAAGGTCATCCGGGATTGAAGCGGGCTGCACTAAAGCTTTCGTTGATTT
AAGGGTCATATCCCTTGCAAATGTAAAGAAACTTTCGCCTTTTTCTAGCT
GAAGTAACTTGAAGGTCTCATAGTCAAGATCTGCGTGGTACCAATTATCA
GCCTGGTAATCGAGACAATCTAATTGGAAATTGAGCATGAGTATCCGAGC
CATCTGCCGTTGAATGCATCCCAGAATGTTGAAACCTCGTGATCGTGAAC
TTTTGAGTCGTTTTGCTGCCGAAGGGTTCCTTCGGTTTTCCAAACTCTCC
CTACTAGCAACCATCTCATACAGAACACAATCATATGGTGCAAGTTCCTT
CTGAAGAGTCTCAAAGTACCTGCAGTCACCAATTTAATCAGGAAAATCCA
TACATAGCAAAGTCGGTACAAGAAAACCGAACATTTTAGCCACACAAGCA
CAAGGAAATTGTCAGAGAGTGAGAACTCAATCCGCTACACTCCGACAAAG
GTTCCGAATGAGATATTAAGAAGACAAAAGTACTCTCATCTTTAACATGT
TCTAATCATTCTTCATGTAGGCACGCAAAACCGAAACCTGAATTATAGAA
CAACACAAACAATTCACAAACCGTACAATCCCAATCACAGAACAATAGCA
ATCCAATTCAGTATGACTAACGATTCAATTATATAAATACAAAAGCTACA
TGCATACATTCAAACCGACGAATCGTATTTCGTTCCTATTAGACTATCCC
TATCGAATAAGGTTTCATATAACCGTTGTGTTCCACTTTCTGTTTGTCGT
ACCGAACCGATCCAATGACAACCCTCCATTCAAAATAAATAATCATGAAA
AATCACGGAAAAATAGAATCCAATTCAGTATGACTAACAATTCGATTATA
TAAACACAAGCTATATGTATAAAATCAAACGATGAATCGTATTTCTTTCC
TCTTAGACTAACCCTATCAAATAAGGTTTCATATAAGTAACTATTTGCAT
TTCAATTTCTGTTCCTCGTACTAAACCAATCCAATGTCAACCCTCCATTC
AAAATACATAATCATGTGTAATCTCATATAAAAATCAAGAAACAATAGCA
ATCCAATTCAATATGACTAGCGATTCGATTATATAAACACAAAAGCTATA
TGTATACATTCAAACCGATGAGTCGTATTTCATTCCTATTAGACTATCCC
TACCGAATAAGGTTTCATATAAGTAACCATTGCGTTCCTCATACCGAACC
GATCCAATGACAACCCTCCATTCAAAATACATAATCAAGAAAATCAATGA
ACAATAGCAATCCAATTCAGTATGACTAACGATTCGATTATATAAACAAA
AAACTATATATATAGATTCAAACCGATGAATCGTATTTTGTTCCTATTAG
ACTATCCCCTACCGAATAAGGTTTCCTATAAACAACCACTCGCATTCCAA
TTTCCGTTCCTCGTACCGAACCGATAAACATATTTAATAATAGTGATTAG
AAAACAATTGTTGAAAGTAACATTGAAATAAACTATAACCAGATAACCAA
AAGCTATATGTATATATAAGTTGTGTTCCGATTTTTGCTCCTCGTACCGA
ACCGATCAGCATTCCTAGTAACATTGAAATAAACTAAAACCAAATAACCA
AGGACTCGATTATATAAACACAAAAGCTATATGTATAAATTCAAACGGAT
GAATCGTATTACGTTCCTAGTAGACTATCCCCTGTCGAATAAGGTGTTAT
ATAAGTTGTGTTCCGATTTTTGCTCCTCGTACCGAACCGATCAGCATTCC
TAGTAACATTGAAATAAACTAAAACCAAATAACCAAGGACTCGATTATAT
AAACACAAAAGCT
back to top