g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = -1 Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815 LR V++TGA+SG+G TA+ LA+ G +++ R+ AE A + P+ VM LDL+SL SVR FV P+++L+ NA + A E S +G E++ ATN+LGHF Sbjct: 86 LRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSV--GMPKDSYTVMHLDLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHF 203
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15 Identity = 48/121 (39.67%), Postives = 75/121 (61.98%), Query Frame = -1 Query: 1468 LRSITVIITGATSGIGAETARVLAKRG-ARLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815 LR T +ITGA+SG+G TA+ LA+ G +V+ R+ LKA+ AKA + + ++ LDL+SL SVR FV+ + L +PV++++ NA + A + + + DG EM+ N+LGHF Sbjct: 83 LRKGTAVITGASSGLGLATAKALAETGRWHVVMGCRDFLKASRAAKA---AGMEKGSYTIVHLDLASLDSVRQFVANVRRLEMPVDVVVCNAAVYQPTAKQPSFTADGFEMSVGVNHLGHF 200
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.763e-15 Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = -1 Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815 LR +VIITGA+SG+G TA+ LA+ G +++ R+ LKA AK+ + P+ +M LDL+SL SVR FV P+++L+ NA + A E + DG E++ TN+LGHF Sbjct: 83 LRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKS---AGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPTAKEPTYTADGFELSVGTNHLGHF 200
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=por PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 3.807e-15 Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = -1 Query: 1468 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1803 TVIITGA+SG+G A+ L +G +++ RNL ++ + FP+ ++ LDL L SVR FV++ L P+ L+ NA + E S D E++ ATN+LGHF Sbjct: 8 TVIITGASSGVGLYGAKALIDKGWHVIMACRNLDKTQKVADEL--GFPKDSYTIIKLDLGYLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATNHLGHF 120
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_LEPBY (Light-dependent protochlorophyllide reductase OS=Leptolyngbya boryana GN=por PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 8.113e-15 Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = -1 Query: 1468 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFA---HEHAISEDGIEMTFATNYLGHF 1803 TV+ITGA+SG+G A+ L KRG +V+ RNL+ A+ A A+ + P+S +M +DL SL SVR FV++ ++ L+ NA + E S +G E++ ATN+ GHF Sbjct: 8 TVVITGASSGVGLYAAKALVKRGWHVVMACRNLEKADSA-AKSLGMSPDS-YTLMHIDLGSLDSVRKFVTQFRESGKSLDALVCNAAVYMPLLKEPMRSPEGYELSVATNHFGHF 120
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3N0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=4 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 1.848e-119 Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = -1 Query: 1318 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 198
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2RYD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 3.263e-119 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3M8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 2.140e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 119.783 bits (299), Expect = 4.522e-30 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 3 Score: 41.2022 bits (95), Expect = 4.522e-30 Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 Query: 853 DLVFFLASKLLKTIPQVN 906 DLVFFLASKLLKTIPQVN Sbjct: 255 DLVFFLASKLLKTIPQVN 272
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.237 bits (944), Expect = 3.934e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 128.257 bits (321), Expect = 2.051e-29 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -2 Query: 987 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 258
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2QWS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 4.873e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 1.131e-117 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 121.324 bits (303), Expect = 1.163e-26 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2 Query: 996 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 255 HSP 3 Score: 106.686 bits (265), Expect = 1.228e-21 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = -2 Query: 621 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 764 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL Sbjct: 254 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 301
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2PB19_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 3.780e-117 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 154.836 bits (390), Expect = 9.092e-69 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM Sbjct: 270 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340 HSP 3 Score: 119.783 bits (299), Expect = 9.092e-69 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 37.3502 bits (85), Expect = 9.092e-69 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0B0P8L4_GOSAR (Short-chain dehydrogenase TIC 32, chloroplastic-like protein OS=Gossypium arboreum GN=F383_02458 PE=3 SV=1) HSP 1 Score: 367.081 bits (941), Expect = 1.632e-116 Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEE TETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEATETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 151.754 bits (382), Expect = 7.839e-68 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVA HPRLLNISGKYFADCNEAWTSKLGSNSNE+AKLWAASEIMVSKHAKAVFDPLSAFDYHHM Sbjct: 270 QAAATTCYVAAHPRLLNISGKYFADCNEAWTSKLGSNSNESAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340 HSP 3 Score: 119.783 bits (299), Expect = 7.839e-68 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 37.3502 bits (85), Expect = 7.839e-68 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A061G5K7_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_016543 PE=3 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 2.348e-103 Identity = 172/197 (87.31%), Postives = 189/197 (95.94%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYL GSTG SGFGSKSTAE+VTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFP+++I+VMALDLSSL+SVR FVSE +SL+LP+N+LINNAGKFAHEH ISEDGIEMTFATNYLGHFLLTKLLLN M+KTAK++GV GRIVNVSSSIHGWFSGD+IR++GQISRSK Sbjct: 1 MLETVKYLFGSTGASGFGSKSTAEQVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPDAKIVVMALDLSSLSSVRKFVSEFQSLSLPLNVLINNAGKFAHEHGISEDGIEMTFATNYLGHFLLTKLLLNKMIKTAKESGVQGRIVNVSSSIHGWFSGDVIRHLGQISRSK 197 HSP 2 Score: 127.872 bits (320), Expect = 6.475e-60 Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVATHPRL+N+SGKYFADCNEA SKLGSNSNEAA+LW ASEIMVS KAVFDP + FDY HM Sbjct: 270 QAAATTCYVATHPRLVNVSGKYFADCNEARPSKLGSNSNEAARLWTASEIMVSIDPKAVFDPRNGFDYDHM 340 HSP 3 Score: 117.087 bits (292), Expect = 6.475e-60 Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 S YDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SPYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 36.965 bits (84), Expect = 6.475e-60 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2SCP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G020400 PE=3 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 1.101e-101 Identity = 170/197 (86.29%), Postives = 184/197 (93.40%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYLIGS G SGFGSKSTAEEVTETCPDLR IT IITGATSGIGAETARVLAKRGARLV+PARNLKAA EAKARIVSEFP SEI++MALDLSSL+SVR FV + ESL+LP+N+L+NNAG+FAH HAISEDGIEMTFATNYLGHFLLTKLLLN MM+T KQTGV GRIVNVSSSI+GWFSGDMIRY+GQISRSK Sbjct: 1 MLETVKYLIGSRGASGFGSKSTAEEVTETCPDLRFITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARIVSEFPNSEIVIMALDLSSLSSVRKFVLDFESLDLPLNLLVNNAGRFAHHHAISEDGIEMTFATNYLGHFLLTKLLLNKMMETTKQTGVQGRIVNVSSSINGWFSGDMIRYLGQISRSK 197 HSP 2 Score: 113.62 bits (283), Expect = 8.363e-50 Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLK++ ANVTVNCVHPGIVRTRLTREREG IT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKEMGANVTVNCVHPGIVRTRLTREREGFITDL 256 HSP 3 Score: 99.3673 bits (246), Expect = 8.363e-50 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = -3 Query: 602 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSK 763 QAA+TTCYVAT+PRL N+SGKYFADCNE WTSKLGS+S EA+KLWAASEIMVS+ Sbjct: 270 QAASTTCYVATYPRLENVSGKYFADCNETWTSKLGSDSIEASKLWAASEIMVSE 323 HSP 4 Score: 35.039 bits (79), Expect = 8.363e-50 Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKT PQ Sbjct: 255 DLVFFLASKLLKTTPQ 270 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bpback to top |