g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH14_MOUSE (Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.284e-20 Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = -1 Query: 1369 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPES----------EIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGW 1803 TV+ITGA SG+G TA L + GAR+++ R+ AEEA ++ E ++ +++V LDL+SL SVR F EL +++LINNAG F + +EDG EM F N+LGHFLLT LLL + +A P RIV VSS ++ + Sbjct: 46 TVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSA-----PSRIVVVSSKLYKY 195 HSP 2 Score: 56.6102 bits (135), Expect = 3.302e-7 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = -2 Query: 1020 FVWLSVPSQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1190 F L+ Y+ + Y+ SKLAN+L T+ELA+RL+ NVTVN +HPGIVRT L R Sbjct: 200 FEDLNSEQSYNKSFCYSRSKLANILFTRELARRLE--GTNVTVNVLHPGIVRTNLGR 254
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.421e-20 Identity = 65/163 (39.88%), Postives = 91/163 (55.83%), Query Frame = -1 Query: 1354 TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEF-------PE------SEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDM 1803 TV+ITGA SG+G TA L + GAR+++ R+ AEEA ++ E PE E+IV LDL+SL SVR F E+ +++LINNAG F + +EDG EM F N+LGHF LL ++ ++ P RIV VSS ++ + GD+ Sbjct: 45 TVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHF-----LLTNLLLGLLKSSAPSRIVVVSSKLYKY--GDI 200 HSP 2 Score: 56.225 bits (134), Expect = 4.538e-7 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = -2 Query: 1020 LSVPSQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1181 L+ Y+ + Y+ SKLAN+L T+ELA+RL+ NVTVN +HPGIVRT L R Sbjct: 205 LNSEQSYNKSFCYSRSKLANILFTRELARRLE--GTNVTVNVLHPGIVRTNLGR 256
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.946e-20 Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = -1 Query: 1375 KSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1854 K A V T L V+ITGA +GIG ETAR LA+RGAR+ + R++ E A + I ++ S+++V LDLS S+R F + ++ILINNAG ++ + DG E A N+LGHFLLT LLL + ++A P R+VN+SS H Sbjct: 24 KFFAGGVCRTDVQLFGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESA-----PARVVNLSSVAH 178
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_DROME (WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.267e-19 Identity = 60/134 (44.78%), Postives = 75/134 (55.97%), Query Frame = -1 Query: 1468 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFP--ESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHF 1863 F S STA +V DL T +ITGA GIG ETAR LA G ++ RN +AE A RI E P S ALDLSSL SV+ FV E++ ++ LI NAG FA + + DG+E TF ++L HF Sbjct: 104 FDSCSTALQVLHG-KDLHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHF 236
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 2.534e-19 Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = -1 Query: 1375 KSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1854 K A V T L V+ITGA +GIG ETAR LA RGAR+ + R++ E A + I + S+++V LDLS S+R F + ++ILINNAG ++ + DG E N+LGHFLLT LLL + +A P R+VNVSS H Sbjct: 24 KFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSA-----PARVVNVSSVAH 178
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 6.971e-19 Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -1 Query: 1375 IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPG---RIVNVSSSIH 1797 I+TG T GIG TA+ LA+ G +++ N A++ ++I E ++ + DL+S+TS+R FV + + +P+++LINNAG + DG E F NYLGHF LL N ++ T K++G PG R+V VSS+ H Sbjct: 47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHF----LLTNLLLDTLKESGSPGHSARVVTVSSATH 186
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 9.966e-19 Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = -1 Query: 1375 VIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1800 V++TGA +GIG ETA+ LA+RGAR+ L R+++ E I + +++V LDLS S+R F + +++LINNAG ++ + DG EM N+LGHFLLT LLL + ++A P RIVNVSS H Sbjct: 44 VVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNVSSLAH 180
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 3.583e-18 Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = -1 Query: 1375 IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1797 I+TGA +GIG ETA+ LA+RGAR+ L R++ E A I + S++ V LDL+ S+R F + + +++LINNAG ++ + DG EM N+LGHFLLT LLL + ++A P RIVN+SS H Sbjct: 42 IVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESA-----PSRIVNLSSLGH 177
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.363e-16 Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = -1 Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815 LR V+ITGA+SG+G TA+ LA+ G +++ R+ LKAA AK+ + + +M LDL+SL SVR FV +P+++LINNA + A E + + DG E++ TN+LGHF Sbjct: 84 LRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAARAAKS---AGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTADGFEISVGTNHLGHF 201
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.167e-16 Identity = 46/121 (38.02%), Postives = 75/121 (61.98%), Query Frame = -1 Query: 1468 LRSITVIITGATSGIGAETARVLAKRGA-RLVLPARN-LKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKF---AHEHAISEDGIEMTFATNYLGHF 1815 +R+ IITGA+SG+G TA+ LA+ G +++ R+ LK A A+A + P+ ++ LDL+SL SVR FV + L++P+++++ NA + A E + + DG EM+ N+LGHF Sbjct: 80 VRTGNAIITGASSGLGLATAKALAESGKWHVIMACRDYLKTARAARA---AGMPKGSYTIVHLDLASLDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTAKEPSFTADGFEMSVGVNHLGHF 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3N0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=4 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 1.848e-119 Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = -1 Query: 1318 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 198
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2RYD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 3.263e-119 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3M8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 2.140e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 119.783 bits (299), Expect = 4.522e-30 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 3 Score: 41.2022 bits (95), Expect = 4.522e-30 Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 Query: 853 DLVFFLASKLLKTIPQVN 906 DLVFFLASKLLKTIPQVN Sbjct: 255 DLVFFLASKLLKTIPQVN 272
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.237 bits (944), Expect = 3.934e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 128.257 bits (321), Expect = 2.051e-29 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -2 Query: 987 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 258
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2QWS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 4.873e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 1.131e-117 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 121.324 bits (303), Expect = 1.163e-26 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2 Query: 996 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 255 HSP 3 Score: 106.686 bits (265), Expect = 1.228e-21 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = -2 Query: 621 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 764 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL Sbjct: 254 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 301
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2PB19_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 3.780e-117 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 154.836 bits (390), Expect = 9.092e-69 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM Sbjct: 270 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340 HSP 3 Score: 119.783 bits (299), Expect = 9.092e-69 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 37.3502 bits (85), Expect = 9.092e-69 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0B0P8L4_GOSAR (Short-chain dehydrogenase TIC 32, chloroplastic-like protein OS=Gossypium arboreum GN=F383_02458 PE=3 SV=1) HSP 1 Score: 367.081 bits (941), Expect = 1.632e-116 Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEE TETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEATETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 151.754 bits (382), Expect = 7.839e-68 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVA HPRLLNISGKYFADCNEAWTSKLGSNSNE+AKLWAASEIMVSKHAKAVFDPLSAFDYHHM Sbjct: 270 QAAATTCYVAAHPRLLNISGKYFADCNEAWTSKLGSNSNESAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340 HSP 3 Score: 119.783 bits (299), Expect = 7.839e-68 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 37.3502 bits (85), Expect = 7.839e-68 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A061G5K7_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_016543 PE=3 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 2.348e-103 Identity = 172/197 (87.31%), Postives = 189/197 (95.94%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYL GSTG SGFGSKSTAE+VTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFP+++I+VMALDLSSL+SVR FVSE +SL+LP+N+LINNAGKFAHEH ISEDGIEMTFATNYLGHFLLTKLLLN M+KTAK++GV GRIVNVSSSIHGWFSGD+IR++GQISRSK Sbjct: 1 MLETVKYLFGSTGASGFGSKSTAEQVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPDAKIVVMALDLSSLSSVRKFVSEFQSLSLPLNVLINNAGKFAHEHGISEDGIEMTFATNYLGHFLLTKLLLNKMIKTAKESGVQGRIVNVSSSIHGWFSGDVIRHLGQISRSK 197 HSP 2 Score: 127.872 bits (320), Expect = 6.475e-60 Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVATHPRL+N+SGKYFADCNEA SKLGSNSNEAA+LW ASEIMVS KAVFDP + FDY HM Sbjct: 270 QAAATTCYVATHPRLVNVSGKYFADCNEARPSKLGSNSNEAARLWTASEIMVSIDPKAVFDPRNGFDYDHM 340 HSP 3 Score: 117.087 bits (292), Expect = 6.475e-60 Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 S YDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SPYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 36.965 bits (84), Expect = 6.475e-60 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2SCP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G020400 PE=3 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 1.101e-101 Identity = 170/197 (86.29%), Postives = 184/197 (93.40%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYLIGS G SGFGSKSTAEEVTETCPDLR IT IITGATSGIGAETARVLAKRGARLV+PARNLKAA EAKARIVSEFP SEI++MALDLSSL+SVR FV + ESL+LP+N+L+NNAG+FAH HAISEDGIEMTFATNYLGHFLLTKLLLN MM+T KQTGV GRIVNVSSSI+GWFSGDMIRY+GQISRSK Sbjct: 1 MLETVKYLIGSRGASGFGSKSTAEEVTETCPDLRFITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARIVSEFPNSEIVIMALDLSSLSSVRKFVLDFESLDLPLNLLVNNAGRFAHHHAISEDGIEMTFATNYLGHFLLTKLLLNKMMETTKQTGVQGRIVNVSSSINGWFSGDMIRYLGQISRSK 197 HSP 2 Score: 113.62 bits (283), Expect = 8.363e-50 Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLK++ ANVTVNCVHPGIVRTRLTREREG IT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKEMGANVTVNCVHPGIVRTRLTREREGFITDL 256 HSP 3 Score: 99.3673 bits (246), Expect = 8.363e-50 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = -3 Query: 602 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSK 763 QAA+TTCYVAT+PRL N+SGKYFADCNE WTSKLGS+S EA+KLWAASEIMVS+ Sbjct: 270 QAASTTCYVATYPRLENVSGKYFADCNETWTSKLGSDSIEASKLWAASEIMVSE 323 HSP 4 Score: 35.039 bits (79), Expect = 8.363e-50 Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKT PQ Sbjct: 255 DLVFFLASKLLKTTPQ 270 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bpback to top |