g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092931
Unique Name	g.barbadense_cottongen_reftransV1_0092931
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2262

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0092931:1..2262 . Dt08:37952556..37955215 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.859e-41
Identity = 94/183 (51.37%), Postives = 126/183 (68.85%), Query Frame = -1

Query: 1345 YLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1893
            +  GS G SGF S+STAEEVT    D   +T I+TGA+SGIG ETARVL+ RG  +V+  RN  +  + K  IV + P +++ VM LDLSS+ SVR F SE +S  LP+N+LINNAG  A    +S+D IE+ FATN+LGHFLLTKLLL+TM  T++++   GRIVN+SS  H +   + +R+
Sbjct:    2 WFFGSKGASGFSSRSTAEEVTHGV-DGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEGVRF 183

HSP 2 Score: 56.9954 bits (136), Expect = 2.567e-7
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = -2

Query: 1020 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1169
            S Y + RAY  SKL NVLH  EL ++LK+   N+T N +HPG + T L R
Sbjct:  190 SSYSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGR 239

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.012e-38
Identity = 91/177 (51.41%), Postives = 122/177 (68.93%), Query Frame = -1

Query: 1345 GVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1875
            GVSGF   STAE+VT    D   +T I+TGA+SGIGAET RVLA RGA +++  RN+ AA++ K  I+ + P +++  + LDLSSL SV+ F SE  S   P+NILINNAG  A    +S+D IE+ FATN++GHFLLT LLL+TM KT +++   GRIVNV+S  H +   + IR+
Sbjct:    9 GVSGFSGSSTAEQVTHGI-DATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRF 184

HSP 2 Score: 55.8398 bits (133), Expect = 6.618e-7
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTRERE---GLITGI 1169
            S Y+  RAY  SKLANVLH  +L + LK+   N+T N +HPG + T L R      GLI  I
Sbjct:  191 SSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFRHNSAVNGLINVI 252

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.416e-25
Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = -1

Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863
            +   STA E+ +   DL    +IITGA SGIG ETA+  A  GA ++L  RN+    +A  RI+ E+ ++++  M LDL+SL SV+NF    +S N+P++IL+ NA  F     ++EDG+E TF  N+LGHF L +LL + + +++     P R+V VSS  H
Sbjct:  107 YDGNSTAMEILQG-RDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRRSS-----PARVVVVSSESH 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.693e-24
Identity = 62/163 (38.04%), Postives = 102/163 (62.58%), Query Frame = -1

Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863
            +   +TA E+ +   D     V++TGA SGIG ETA+  A  GA ++L  RN+  A EA +RI+ E+ ++++  M LDL+ L SV++F    ++ N+P+++L+ NA  FA   ++++DG+E TF  N+LGHF L +LL + + ++A     P R++ VSS  H
Sbjct:  107 YDGSTTAMEILQG-RDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.717e-23
Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = -1

Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863
            +   +TA E+ +   D     V++TGA SGIG ETA+  A  GA ++L  RNL  A EA +RI+ E+ ++++  M LDL+ L SV++F    ++ N+ +++L+ NAG FA    +++DG+E TF  N+LGHF L +LL + + +++     P R++ VSS  H
Sbjct:  107 YDGSTTAMEILQG-RDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSS-----PARVIVVSSESH 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.854e-23
Identity = 58/148 (39.19%), Postives = 95/148 (64.19%), Query Frame = -1

Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818
            D     V++TGA SGIG ETA+  A  GA ++L  RN+  A EA +RI+ E+ ++++  + LDL+ L SV++F    ++ N+P+++L+ NA  FA   ++++DG+E TF  N+LGHF L +LL + + ++A     P R++ VSS  H
Sbjct:  121 DFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.821e-22
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = -1

Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824
            CP   +I   TVI+TGA +GIG +TA  LA+RG  ++L  R+++  E A   I  E     +    LDL+SL S+R F +++      V+ILINNAG     H  +EDG EM F  N+LGHFLLT LLL+ +  +A     P RI+N+SS  H
Sbjct:   30 CPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.205e-21
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -1

Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818
            DL    +I+TGA SGIG ETAR  A  GA ++L  RN   A +A + I+ E+ ++ + V+ LDL+SL SVR F    ++  LP+++L+ NA   +    ++EDG E TF   +LGHFLL +LL + +  +A     P R+V VSS  H
Sbjct:  118 DLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTFQICHLGHFLLVQLLQDVLRLSA-----PARVVVVSSESH 260

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.026e-21
Identity = 66/153 (43.14%), Postives = 88/153 (57.52%), Query Frame = -1

Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824
            CP   +I   TVI+TGA +GIG +TA  LAKRG  ++L  R+++  E A   I  E     +    LDL+SL S+R F  ++      V+IL+NNA      H  +EDG EM F  NYLGHFLLT LLL+ +  +A     P RI+N+SS  H
Sbjct:   30 CPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.056e-20
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = -1

Query: 1375 VIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1800
            V+ITGA +GIG ETAR LA+RGAR+ +  R++   E A + I ++   S+++V  LDLS   S+R F     +    ++ILINNAG     ++ + DG E  F  N+LGHFLLT LLL  + ++A     P R+VN+SS  H
Sbjct:   42 VVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSSIAH 178

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: M1AWI9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012251 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 7.150e-91
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYL+GS G SG+GSKSTAE VTE  PDLRS+T IITGATSGIGAETARV+AKRG +L+LPAR++KAAEE KARI+SE PE+EIIVMALDLSSL+SVR FV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL  M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+  I++ K
Sbjct:    1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVMAKRGVKLILPARSVKAAEETKARILSEVPEAEIIVMALDLSSLSSVRKFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANKTGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197

HSP 2 Score: 110.923 bits (276), Expect = 3.656e-26
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = -2

Query:  999 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1169
            SQYDATRAYALSKLANVLHTKELAQ LK++ ANVTVNCVHPGIVRTRLTREREGL+T
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQILKKMGANVTVNCVHPGIVRTRLTREREGLVT 254

HSP 3 Score: 37.3502 bits (85), Expect = 3.656e-26
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = -1

Query:  853 DLVFFLASKLLKTIPQVN 906
            DLVFFL SKLLKTIPQV+
Sbjct:  255 DLVFFLTSKLLKTIPQVS 272

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: K4CPT3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g082870.2 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.305e-90
Identity = 153/197 (77.66%), Postives = 176/197 (89.34%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYL+GS G SG+GSKSTAE VTE  PDLRS+T IITGATSGIGAETARVLAKRG +L+LPAR++KAAEE K RI+SE PE+EIIVMALDLSSL+SVRNFV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL  M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+  I++ K
Sbjct:    1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVLAKRGVKLILPARSVKAAEETKTRILSEVPEAEIIVMALDLSSLSSVRNFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANETGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197

HSP 2 Score: 108.227 bits (269), Expect = 7.388e-51
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = -3

Query:  569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763
            QAAATTCYVATHPRL N+SGKYFADCNE  +SKLGSNS EAA++W+ASEIMV+K++ A  DPL A
Sbjct:  270 QAAATTCYVATHPRLANVSGKYFADCNEVCSSKLGSNSTEAARIWSASEIMVAKNSNANLDPLEA 334

HSP 3 Score: 107.457 bits (267), Expect = 7.388e-51
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELA+ LK+  ANVTVNCVHPGIVRTRLTREREGL+T +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELARVLKKTGANVTVNCVHPGIVRTRLTREREGLVTDL 256

HSP 4 Score: 35.8094 bits (81), Expect = 7.388e-51
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFL SKLLKTIPQ
Sbjct:  255 DLVFFLTSKLLKTIPQ 270

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: V7CPT2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G301600g PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.581e-90
Identity = 155/197 (78.68%), Postives = 177/197 (89.85%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            M++TLKYL+GS G SGFGSKSTAE+VTE   DLRS T IITGATSGIGAETARVLAKRG RL+LPAR++KAAE+AKARIVSE P+SEIIVMALDLSSL SVR+FV++  SL LP+++LINNAGKFAHEHA+SEDG+EMTFATNYLGHFLLTKLL+ TM +TAK+TGV GRIVNVSSSIHGWFSGD I Y+  ISR+K
Sbjct:    1 MIDTLKYLLGSAGPSGFGSKSTAEQVTENRADLRSFTAIITGATSGIGAETARVLAKRGVRLILPARSVKAAEDAKARIVSECPDSEIIVMALDLSSLNSVRSFVNQFNSLGLPLHLLINNAGKFAHEHALSEDGVEMTFATNYLGHFLLTKLLVKTMAETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNK 197

HSP 2 Score: 107.842 bits (268), Expect = 1.000e-50
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            S YDATRAYALSKLANV HTKELA+RL+Q+ ANVTVNCVHPGIVRTRLTREREGL+T +
Sbjct:  198 SHYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDL 256

HSP 3 Score: 105.916 bits (263), Expect = 1.000e-50
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = -3

Query:  569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763
            QAAATTCYVATHPRL ++SGKYFADCNE  TSKLGSNS EA++LWA SE M+S+  KA FD L A
Sbjct:  270 QAAATTCYVATHPRLFDVSGKYFADCNETSTSKLGSNSTEASRLWATSEFMISRGPKAAFDLLKA 334

HSP 4 Score: 36.965 bits (84), Expect = 1.000e-50
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKTIPQ
Sbjct:  255 DLVFFLASKLLKTIPQ 270

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: M1AWI8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012251 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.734e-90
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYL+GS G SG+GSKSTAE VTE  PDLRS+T IITGATSGIGAETARV+AKRG +L+LPAR++KAAEE KARI+SE PE+EIIVMALDLSSL+SVR FV+E E LN P+N+LINNAGKFAH+HAISEDGIEMTFATN+LGHFLLTKLLL  M++TA +TGV GRIVNVSSSIHGWFSGD I+Y+  I++ K
Sbjct:    1 MLETVKYLLGSAGASGYGSKSTAENVTEQSPDLRSVTAIITGATSGIGAETARVMAKRGVKLILPARSVKAAEETKARILSEVPEAEIIVMALDLSSLSSVRKFVAEFEYLNFPLNLLINNAGKFAHQHAISEDGIEMTFATNHLGHFLLTKLLLKKMIETANKTGVQGRIVNVSSSIHGWFSGDSIQYLRLITKDK 197

HSP 2 Score: 110.153 bits (274), Expect = 1.376e-51
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELAQ LK++ ANVTVNCVHPGIVRTRLTREREGL+T +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQILKKMGANVTVNCVHPGIVRTRLTREREGLVTDL 256

HSP 3 Score: 108.227 bits (269), Expect = 1.376e-51
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = -3

Query:  569 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSA 763
            QAAATTCYVATHPRL N+SGKYFADCNE  +SKLGSNS EAA++W+ASEIMV+K++ A  DPL A
Sbjct:  270 QAAATTCYVATHPRLANVSGKYFADCNEVCSSKLGSNSTEAARIWSASEIMVAKNSNANLDPLDA 334

HSP 4 Score: 35.8094 bits (81), Expect = 1.376e-51
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFL SKLLKTIPQ
Sbjct:  255 DLVFFLTSKLLKTIPQ 270

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: V4MEM7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025670mg PE=4 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.789e-89
Identity = 153/197 (77.66%), Postives = 176/197 (89.34%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            M+ET KYLIG+ G SGFGSKSTA+EVTE C DLRS T IITGATSGIGAETARVLAKRGARL+ PARN+KAAEEAK +IVSEFPE+EI+VM LDLSS++SVR+FVS+ ESL+LP+N+LINNAGK AHEHAISEDGIEMTFATNYLGHFLLT LLL  M++TA++TGV GRIVNV+S IHGWFSGD+I Y+  IS+ K
Sbjct:    1 MIETGKYLIGAAGASGFGSKSTADEVTENC-DLRSTTAIITGATSGIGAETARVLAKRGARLIFPARNVKAAEEAKGKIVSEFPETEIVVMELDLSSISSVRSFVSDFESLDLPLNLLINNAGKLAHEHAISEDGIEMTFATNYLGHFLLTSLLLKKMIQTAEETGVQGRIVNVTSGIHGWFSGDLIGYLRLISQPK 196

HSP 2 Score: 102.834 bits (255), Expect = 6.427e-47
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = -2

Query:  999 QYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1166
            Q+DATRAYALSKLANVLHTKEL+ RL+++ ANVTVNCVHPG+V+TRLTR+REGL+T
Sbjct:  198 QFDATRAYALSKLANVLHTKELSSRLQKIGANVTVNCVHPGVVKTRLTRDREGLLT 253

HSP 3 Score: 98.9821 bits (245), Expect = 6.427e-47
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = -3

Query:  572 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVS-KHAKAVFDPLS 763
            QAAATTCYVAT+ RL+N+SGKYF DCNE   S LGSNS+EA KLWAASEI+V+ +H+KA FDP S
Sbjct:  269 QAAATTCYVATNSRLVNVSGKYFTDCNETTPSGLGSNSSEATKLWAASEILVTQQHSKAGFDPFS 333

HSP 4 Score: 36.5798 bits (83), Expect = 6.427e-47
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKT+PQ
Sbjct:  254 DLVFFLASKLLKTVPQ 269

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
TIC32_ARATH	6.859e-41	51.37	Short-chain dehydrogenase TIC 32, chloroplastic OS...	[more]
TIC32_PEA	3.012e-38	51.41	Short-chain dehydrogenase TIC 32, chloroplastic OS...	[more]
WWOX_CHICK	1.416e-25	41.10	WW domain-containing oxidoreductase OS=Gallus gall...	[more]
WWOX_HUMAN	9.693e-24	38.04	WW domain-containing oxidoreductase OS=Homo sapien...	[more]
WWOX_MOUSE	4.717e-23	38.04	WW domain-containing oxidoreductase OS=Mus musculu...	[more]
WWOX_PONAB	5.854e-23	39.19	WW domain-containing oxidoreductase OS=Pongo abeli...	[more]
RDH13_HUMAN	9.821e-22	43.14	Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ...	[more]
WWOX_DANRE	1.205e-21	41.22	WW domain-containing oxidoreductase OS=Danio rerio...	[more]
RDH13_MOUSE	3.026e-21	43.14	Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ...	[more]
RDH12_MOUSE	1.056e-20	42.96	Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
M1AWI9_SOLTU	7.150e-91	77.16	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
K4CPT3_SOLLC	1.305e-90	77.66	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
V7CPT2_PHAVU	3.581e-90	78.68	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
M1AWI8_SOLTU	3.734e-90	77.16	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
V4MEM7_EUTSA	1.789e-89	77.66	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 37..54 score: 43.09 coord: 113..124 score: 43.53 coord: 163..179 score: 28.87
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 37..177 e-value: 9.0E-29 score: 100.2
IPR016040	NAD(P)-binding domain	GENE3D	3.40.50.720		coord: 31..180 e-value: 1.4E-42 score: 145.2
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 31..185
None	No IPR available	PANTHER	PTHR24320	FAMILY NOT NAMED	coord: 13..179
None	No IPR available	PANTHER	PTHR24320:SF100	SUBFAMILY NOT NAMED	coord: 13..179

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bp
GCCCACTTATTCTCTTCTCTCCCTTTCTTCATTTTTTTTATTGCATATTC
TTCCTAAAGAAACCCATGAACATGTACCTTATATCTATTAATATTCATCC
TGATTAGGGTTTCCAAGTACTTCCACGATTCCAAGCAAAACCCCATCAGC
TCATTAACATATATATCCATCCGCCATAATCATTTTACAATTATCACTGG
ATCCCTTTCTTTATAATCCGTCTTTAAAAAATTAGTATGGGGGTATTATA
GGGCAATATATATGCAAATTATATAATACCAGTACTAATAATAATGGATA
GAAACAGTTTTATAAGTACAAAACCCTCTTCTTTTCCAGTACTAGGTAAG
CTTCTTAACATGTACCGAACCAACATAGCTATAATTTAAGGTGCATAATA
CTTGTATATCTAATTGTCTTTTAACTGATGTATACATATACACTATATTC
CTATCATCTTTTCTCTTCCAACTAAGATATTTCATATCTTTTGCTGTTTC
TGTTTCTAATTTCTAGTCTTCTTTTTTTTTTCATCTCTTTATTTTTATTA
CATATGGTGATAATCGAAGGCACTAAGCGGATCAAACACTGCTTTAGCGT
GTTTGGAAACCATGATTTCAGAGGCAGCCCAAAGCTTTGCAGCTTCGTTG
GAATTCGACCCCAGTTTGGATGTCCATGCTTCGTTGCAGTCTGCAAAGTA
TTTCCCACTTATATTTAGCAGTCTTGGATGCGTGGCGACGTAACAAGTCG
TGGCAGCTGCCTGTACCCTCGACAAATGAAAGTCCATTGTCCATCAAAAC
CACCCACTTCAACTCTCATTAATCAAAAGCTTTAATTACTTAAGATATAT
TAGTTTACCTGAGGAATGGTTTTCAGGAGCTTGGAAGCCAAAAAGAAAAC
CAGATCTGCAGGTTAATATATATTAGATTTTAACCAGAGAGAGTTGAAAG
TTGAAAACATTAAATAAAATCAAATGGCATCTTCTATATGTATATACCTG
TTATCAAGCCCTCACGTTCCCTGGTGAGACGGGTTCTAACAATACCTGGA
TGAACACAGTTCACAGTCACGTTGGCATCCACTTGCTTCAGTCTCTGGGC
AAGCTCCTTGGTATGCAAAACGTTAGCGAGCTTCGAGAGAGCATAAGCAC
GTGTCGCATCGTATTGACTGGGAACAGACAGCCAGACAAAAAACAGACAC
ATGAATTAAAAATCGATAGGAAATGTCAAATCCAAAAGAAAAGAAACCCA
ATCTTCTGTAACAATCATTTACTCCTATACTATGTTCGATTCTGTCACTG
TTATTTATCATTCTTCACCTTTTGCTTCTGGATATCTGGCCTATATATCG
GATCATATCGCCAGAAAACCATCCATGGATACTCGACGACACATTCACTA
TTCTTCCTGGAACACCTGTTTGTTTAGCCGTCTTCATCATCGTGTTTAGC
AACAACTTCGTCAACAAAAAATGACCAAGATAATTAGTGGCAAATGTCAT
CTCGATTCCATCCTCGGAGATTGCATGTTCATGCGCAAACTTCCCGGCAT
TGTTTATGAGGATATTGACTGGCAAGTTAAGAGACTCCAACTCCGATACA
AAATTTCGAACAGAAGTGAGTGAACTAAGATCAAGAGCCATGACAATAAT
TTCTGATTCAGGAAACTCGGAAACTATCCTAGCCTTTGCTTCCTCAGCGG
CTTTAAGGTTCCGAGCTGGAAGCACCAACCTCGCTCCTCGTTTGGCCAAC
ACTCTGGCCGTCTCAGCTCCGATCCCCGACGTCGCACCTGTGATGATGAC
TGTTATAGAGCGGAGATCAGGGCAAGTCTCGGTGACTTCCTCGGCGGTGG
ACTTAGAGCCGAAGCCGCTGACTCCTGTTGAGCCGATCAGGTACTTCAGA
GTCTCTAGCATTTCAACTTCCTTTTTTTTCTTTTAGATATGATACAATTT
TTGAGAGTTTAAAGTTGGGTGAAGAACACACAAAATGACGTAAAAATCAT
TTAAGAAAAACAAACAGCAATAAAGGGGTTTGTTTACTCTTGTGGGATTT
AAGGTTTACTATAGAAAGAAAAGATTATCAGAAATGAAAGTTTTAGGGGA
AAGGAGCTAAAAGCTAATCTGTTTCAAGGACAAAAGAGAAAGTGGGATCG
GATTTTATAATGGAGCTAGCTTTGGTGGGGGAGAATCCAATTGAGAGAAC
GAGAGAGAGAGAGAATGGATTATATGTTTGTCATTTGATTGATTATATTT
AACGAAAATTAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

Search form

g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense

Pages

Pages