g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 6.859e-41 Identity = 94/183 (51.37%), Postives = 126/183 (68.85%), Query Frame = -1 Query: 1345 YLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1893 + GS G SGF S+STAEEVT D +T I+TGA+SGIG ETARVL+ RG +V+ RN + + K IV + P +++ VM LDLSS+ SVR F SE +S LP+N+LINNAG A +S+D IE+ FATN+LGHFLLTKLLL+TM T++++ GRIVN+SS H + + +R+ Sbjct: 2 WFFGSKGASGFSSRSTAEEVTHGV-DGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEGVRF 183 HSP 2 Score: 56.9954 bits (136), Expect = 2.567e-7 Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = -2 Query: 1020 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1169 S Y + RAY SKL NVLH EL ++LK+ N+T N +HPG + T L R Sbjct: 190 SSYSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGR 239
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 3.012e-38 Identity = 91/177 (51.41%), Postives = 122/177 (68.93%), Query Frame = -1 Query: 1345 GVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1875 GVSGF STAE+VT D +T I+TGA+SGIGAET RVLA RGA +++ RN+ AA++ K I+ + P +++ + LDLSSL SV+ F SE S P+NILINNAG A +S+D IE+ FATN++GHFLLT LLL+TM KT +++ GRIVNV+S H + + IR+ Sbjct: 9 GVSGFSGSSTAEQVTHGI-DATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRF 184 HSP 2 Score: 55.8398 bits (133), Expect = 6.618e-7 Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTRERE---GLITGI 1169 S Y+ RAY SKLANVLH +L + LK+ N+T N +HPG + T L R GLI I Sbjct: 191 SSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFRHNSAVNGLINVI 252
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 1.416e-25 Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = -1 Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863 + STA E+ + DL +IITGA SGIG ETA+ A GA ++L RN+ +A RI+ E+ ++++ M LDL+SL SV+NF +S N+P++IL+ NA F ++EDG+E TF N+LGHF L +LL + + +++ P R+V VSS H Sbjct: 107 YDGNSTAMEILQG-RDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRRSS-----PARVVVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 9.693e-24 Identity = 62/163 (38.04%), Postives = 102/163 (62.58%), Query Frame = -1 Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863 + +TA E+ + D V++TGA SGIG ETA+ A GA ++L RN+ A EA +RI+ E+ ++++ M LDL+ L SV++F ++ N+P+++L+ NA FA ++++DG+E TF N+LGHF L +LL + + ++A P R++ VSS H Sbjct: 107 YDGSTTAMEILQG-RDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.717e-23 Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = -1 Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863 + +TA E+ + D V++TGA SGIG ETA+ A GA ++L RNL A EA +RI+ E+ ++++ M LDL+ L SV++F ++ N+ +++L+ NAG FA +++DG+E TF N+LGHF L +LL + + +++ P R++ VSS H Sbjct: 107 YDGSTTAMEILQG-RDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSS-----PARVIVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.854e-23 Identity = 58/148 (39.19%), Postives = 95/148 (64.19%), Query Frame = -1 Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818 D V++TGA SGIG ETA+ A GA ++L RN+ A EA +RI+ E+ ++++ + LDL+ L SV++F ++ N+P+++L+ NA FA ++++DG+E TF N+LGHF L +LL + + ++A P R++ VSS H Sbjct: 121 DFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 9.821e-22 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = -1 Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824 CP +I TVI+TGA +GIG +TA LA+RG ++L R+++ E A I E + LDL+SL S+R F +++ V+ILINNAG H +EDG EM F N+LGHFLLT LLL+ + +A P RI+N+SS H Sbjct: 30 CPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.205e-21 Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -1 Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818 DL +I+TGA SGIG ETAR A GA ++L RN A +A + I+ E+ ++ + V+ LDL+SL SVR F ++ LP+++L+ NA + ++EDG E TF +LGHFLL +LL + + +A P R+V VSS H Sbjct: 118 DLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTFQICHLGHFLLVQLLQDVLRLSA-----PARVVVVSSESH 260
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 3.026e-21 Identity = 66/153 (43.14%), Postives = 88/153 (57.52%), Query Frame = -1 Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824 CP +I TVI+TGA +GIG +TA LAKRG ++L R+++ E A I E + LDL+SL S+R F ++ V+IL+NNA H +EDG EM F NYLGHFLLT LLL+ + +A P RI+N+SS H Sbjct: 30 CPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.056e-20 Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = -1 Query: 1375 VIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1800 V+ITGA +GIG ETAR LA+RGAR+ + R++ E A + I ++ S+++V LDLS S+R F + ++ILINNAG ++ + DG E F N+LGHFLLT LLL + ++A P R+VN+SS H Sbjct: 42 VVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSSIAH 178
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: M5W9U9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008299mg PE=3 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 6.945e-99 Identity = 166/196 (84.69%), Postives = 182/196 (92.86%), Query Frame = -1 Query: 1324 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRS 1911 MLET+KYL+GS G SG+GS+STAE+VTE+ PDLR IT IITGATSGIGAETARVLAKRGARLVLPAR+LKAAE+AKARIVSEFP+SEII+MALDLSSLTSVRNFVSE ESL LP+N+LINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLN M+ A TGV GRIVNVSS+IHGWFSGD IRY+G+ISRS Sbjct: 1 MLETVKYLLGSAGASGYGSRSTAEQVTESSPDLRHITAIITGATSGIGAETARVLAKRGARLVLPARSLKAAEDAKARIVSEFPDSEIIIMALDLSSLTSVRNFVSEFESLQLPLNLLINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNKMIGPAAATGVQGRIVNVSSAIHGWFSGDTIRYLGEISRS 196 HSP 2 Score: 108.997 bits (271), Expect = 3.923e-24 Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 S YD TRAYALSKLANVLHTKELA+RLK++DANVTVNCVHPGIVRTRLTREREGL T + Sbjct: 198 SDYDETRAYALSKLANVLHTKELARRLKEMDANVTVNCVHPGIVRTRLTREREGLATDL 256 HSP 3 Score: 32.3426 bits (72), Expect = 3.923e-24 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DL F +ASKLLKTIPQ Sbjct: 255 DLAFLMASKLLKTIPQ 270 HSP 4 Score: 91.2781 bits (225), Expect = 1.311e-16 Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = -3 Query: 560 HPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDY 730 HPRL+++SGKYFADCNE SKLGSN +EAA+LW+ASEIMVSK + A+FDP S +Y Sbjct: 281 HPRLVDVSGKYFADCNETLPSKLGSNLSEAARLWSASEIMVSKSSTAIFDPSSQLEY 337
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: D7TVM6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02190 PE=3 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 4.569e-97 Identity = 163/197 (82.74%), Postives = 182/197 (92.39%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 ML+ LKYL+GS G SG+GSKSTAEEVTE CPDL S+T +ITGATSGIGAETARVLAKRGARLVLPAR+LKAAEEAKARIV+EFP SEI+VMALDLSSL SVR FVSE ESL+LP+N+LINNAGKF HEHAISEDGIEMTFATNYLGHFLLTKLLLN M++TAK+TGV GRIVNVSS+IH WFSGD+IRY+G I+R+K Sbjct: 1 MLDALKYLLGSFGASGYGSKSTAEEVTENCPDLGSVTAVITGATSGIGAETARVLAKRGARLVLPARSLKAAEEAKARIVAEFPNSEIVVMALDLSSLDSVRCFVSEFESLDLPLNLLINNAGKFTHEHAISEDGIEMTFATNYLGHFLLTKLLLNKMIETAKKTGVQGRIVNVSSTIHSWFSGDVIRYLGLITRNK 197 HSP 2 Score: 121.324 bits (303), Expect = 1.958e-26 Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = -3 Query: 563 F*WTMDFHLSRVQAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFD 799 F T F + QAAATTCYVATHPRL+N+SGKYFADCNEAWTSKLGSNS EA++LW+ASEIM ++ ++A+FDPL A D Sbjct: 258 FFLTSKFLKTIPQAAATTCYVATHPRLVNVSGKYFADCNEAWTSKLGSNSQEASRLWSASEIMTARDSRAIFDPLDASD 336 HSP 3 Score: 112.849 bits (281), Expect = 1.054e-25 Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYA+SKLANVLHTKELAQRLKQ+DANVTVNCVHPGIVRTRLTRE EG++T + Sbjct: 198 SQYDATRAYAVSKLANVLHTKELAQRLKQMDANVTVNCVHPGIVRTRLTRETEGIVTDL 256 HSP 4 Score: 33.4982 bits (75), Expect = 1.054e-25 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DL+FFL SK LKTIPQ Sbjct: 255 DLIFFLTSKFLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: W9SF90_9ROSA (Short-chain dehydrogenase TIC 32 OS=Morus notabilis GN=L484_000143 PE=4 SV=1) HSP 1 Score: 303.908 bits (777), Expect = 1.936e-94 Identity = 156/198 (78.79%), Postives = 180/198 (90.91%), Query Frame = -1 Query: 1318 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 1911 MLE++KYLIGS G SG+ SKSTA+EVTE DLRS+T IITGATSGIGAETARVLA+RGARLVLPAR+LKAAE+AKARI SE+P+SEI+VMALDLSSL SVR FV E E+L+LP+N+LINNAGKFAH+HAISEDGIEMTFATNYLGHFLLTKLLL M++TAK TG+ GRIVNVSS++HGWFSGDM+RY+G I R+KR Sbjct: 1 MLESVKYLIGSVGASGYSSKSTADEVTE-MSDLRSVTAIITGATSGIGAETARVLARRGARLVLPARSLKAAEDAKARIASEYPDSEIVVMALDLSSLASVRRFVVEFEALDLPLNLLINNAGKFAHQHAISEDGIEMTFATNYLGHFLLTKLLLKKMIETAKATGIQGRIVNVSSTVHGWFSGDMLRYLGVIGRTKR 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A022R0R1_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0096692mg PE=4 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 3.465e-94 Identity = 156/197 (79.19%), Postives = 178/197 (90.36%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYLIGS G SGF SKSTAE+VT+ CPDLRSIT IITGATSGIGAETARVLAKRGARLVLPAR+LKAAE+ KARI+SE PES+IIVM LDLSSL SVR FVSE ESL+LP+N+LINNAGKF+++H ISEDG+EMTFATNYLGHFLLTKLL+ M++TAK +GV GRIVNVSSSIH WFSGDMIRY+ I+++K Sbjct: 1 MLETVKYLIGSAGASGFSSKSTAEQVTDACPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARSLKAAEDTKARILSEIPESQIIVMWLDLSSLDSVRRFVSEFESLDLPLNLLINNAGKFSYDHGISEDGVEMTFATNYLGHFLLTKLLMKKMIETAKSSGVEGRIVNVSSSIHSWFSGDMIRYLRLITKNK 197 HSP 2 Score: 103.219 bits (256), Expect = 7.734e-21 Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = -2 Query: 999 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1169 S YD TRAYALSKLANVLHTKEL +RL++++ANVT NCVHPGIVRTRLTR+REGLIT Sbjct: 198 SDYDGTRAYALSKLANVLHTKELDRRLREMEANVTANCVHPGIVRTRLTRDREGLIT 254
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: B9GL13_POPTR (Short-chain dehydrogenase/reductase family protein OS=Populus trichocarpa GN=POPTR_0001s11070g PE=3 SV=2) HSP 1 Score: 306.99 bits (785), Expect = 1.990e-93 Identity = 159/197 (80.71%), Postives = 177/197 (89.85%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 M E+LKYL GS G SG+GSKST E+VTE C DL SIT IITGATSGIGAETARVLAKRGARLVLPAR+LKAAE+AKARI+SE P++EIIVM LDLSSL SVRNFVSE ES +LP+N+LINNAGKFAHEHAISEDGIEMTFATN+LGHFLLTKLLL M++TAK TG+ GRIVNVSSSI+ WFSGD IRY+GQISR+K Sbjct: 1 MFESLKYLTGSAGASGYGSKSTGEQVTENCGDLHSITAIITGATSGIGAETARVLAKRGARLVLPARSLKAAEDAKARIISENPDTEIIVMGLDLSSLNSVRNFVSEFESFDLPLNLLINNAGKFAHEHAISEDGIEMTFATNFLGHFLLTKLLLKKMIETAKTTGIQGRIVNVSSSIYNWFSGDPIRYLGQISRNK 197 HSP 2 Score: 119.398 bits (298), Expect = 3.254e-53 Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = -3 Query: 560 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPL-SAFDY 763 QAAATTCYVATHPRL+N++GKYF+DCNEA TSKLGSNS EAA+LW ASEIMVS+ +KAVFDPL S DY Sbjct: 271 QAAATTCYVATHPRLVNVTGKYFSDCNEASTSKLGSNSTEAARLWTASEIMVSRGSKAVFDPLTSTLDY 339 HSP 3 Score: 107.071 bits (266), Expect = 3.254e-53 Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = -2 Query: 999 QYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT 1166 +D TRAYALSKLANVLHTKELAQRLKQ++ANVTVNCVHPG+VRTRLTREREG++T Sbjct: 200 DFDPTRAYALSKLANVLHTKELAQRLKQMEANVTVNCVHPGVVRTRLTREREGIVT 255 HSP 4 Score: 32.7278 bits (73), Expect = 3.254e-53 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 D+ FFL SKLLKTIPQ Sbjct: 256 DMAFFLTSKLLKTIPQ 271
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A022R3X5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a0096692mg PE=4 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 2.165e-93 Identity = 156/197 (79.19%), Postives = 178/197 (90.36%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYLIGS G SGF SKSTAE+VT+ CPDLRSIT IITGATSGIGAETARVLAKRGARLVLPAR+LKAAE+ KARI+SE PES+IIVM LDLSSL SVR FVSE ESL+LP+N+LINNAGKF+++H ISEDG+EMTFATNYLGHFLLTKLL+ M++TAK +GV GRIVNVSSSIH WFSGDMIRY+ I+++K Sbjct: 1 MLETVKYLIGSAGASGFSSKSTAEQVTDACPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARSLKAAEDTKARILSEIPESQIIVMWLDLSSLDSVRRFVSEFESLDLPLNLLINNAGKFSYDHGISEDGVEMTFATNYLGHFLLTKLLMKKMIETAKSSGVEGRIVNVSSSIHSWFSGDMIRYLRLITKNK 197 HSP 2 Score: 103.605 bits (257), Expect = 2.472e-42 Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 S YD TRAYALSKLANVLHTKEL +RL++++ANVT NCVHPGIVRTRLTR+REGLIT + Sbjct: 198 SDYDGTRAYALSKLANVLHTKELDRRLREMEANVTANCVHPGIVRTRLTRDREGLITDL 256 HSP 3 Score: 82.4185 bits (202), Expect = 2.472e-42 Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = -3 Query: 581 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFD 763 QAAATTCYVAT+PR+ N SGKY++DCNE+ SKLGS+ EAA+LWA SE MVS + + D Sbjct: 270 QAAATTCYVATNPRVENASGKYYSDCNESSPSKLGSSLAEAARLWAVSEKMVSTDSNILVD 330 HSP 4 Score: 37.3502 bits (85), Expect = 2.472e-42 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A068UUZ7_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_62 OS=Coffea canephora GN=GSCOC_T00035613001 PE=3 SV=1) HSP 1 Score: 304.294 bits (778), Expect = 1.180e-92 Identity = 156/197 (79.19%), Postives = 176/197 (89.34%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYL+GS G SGFGSKSTAE+VT+ CPDLRSIT IITGATSGIGAETARVLAKRGARLVLPAR+LKAAE++KARI+SEFPES+IIVM LDLSS SVR FV++ SLNLP+++LINNAGKF EHAISEDGIEMTFATNYLGHFLLTKLL+ M++TAK TGV GRIVNVSSSIH WFSGD I Y+ I+RS+ Sbjct: 1 MLETVKYLLGSAGPSGFGSKSTAEQVTDYCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARSLKAAEDSKARILSEFPESDIIVMPLDLSSFFSVRKFVADFRSLNLPLHLLINNAGKFTQEHAISEDGIEMTFATNYLGHFLLTKLLVTKMVETAKSTGVQGRIVNVSSSIHSWFSGDPISYLSSITRSR 197 HSP 2 Score: 105.916 bits (263), Expect = 1.669e-47 Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQ-VDANVTVNCVHPGIVRTRLTREREGLITGI 1169 S YDATRAYALSKLANVLHTKELAQRL++ ++ANVTVNCVHPGIVRTRLTRER+GLIT + Sbjct: 198 SHYDATRAYALSKLANVLHTKELAQRLQEEMEANVTVNCVHPGIVRTRLTRERDGLITDL 257 HSP 3 Score: 97.4413 bits (241), Expect = 1.669e-47 Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = -3 Query: 602 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSK 763 QAAATTCYVATHPRLLN++GKYFADCNEA SKL SNS+EAA++W+ASE M+SK Sbjct: 271 QAAATTCYVATHPRLLNVTGKYFADCNEAPASKLASNSSEAARIWSASETMISK 324 HSP 4 Score: 36.965 bits (84), Expect = 1.669e-47 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 256 DLVFFLASKLLKTIPQ 271
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: I1KPN7_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 4.946e-92 Identity = 155/198 (78.28%), Postives = 176/198 (88.89%), Query Frame = -1 Query: 1318 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 1911 MLET+KYL+GS G SGFGSK+TAE+VTE DLRSIT IITGATSGIG ETARVLAKRGARLVLPAR++KAAE+AKARIVSE P+SEIIVMALDLSSL SV NFV+ SL LP+++LINNAGKFAHEHAISEDG+EMTFATNYLGHF++T LL+ M++TAK+TGV GRIVNVSSSIHGWFSGD I Y+ ISR+KR Sbjct: 1 MLETVKYLLGSAGPSGFGSKTTAEQVTENHADLRSITAIITGATSGIGTETARVLAKRGARLVLPARSMKAAEDAKARIVSECPDSEIIVMALDLSSLNSVTNFVAHFHSLGLPLHLLINNAGKFAHEHAISEDGVEMTFATNYLGHFVMTNLLVKKMVETAKETGVQGRIVNVSSSIHGWFSGDAISYLALISRNKR 198 HSP 2 Score: 112.079 bits (279), Expect = 5.714e-52 Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = -3 Query: 560 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDY 763 QAAATTCYVATHPRLLN+SGKYFADCNE TSKLGSNS EAA+LWAASE M+S+ KA FD L+ ++ Sbjct: 270 QAAATTCYVATHPRLLNVSGKYFADCNETSTSKLGSNSTEAARLWAASEFMISRGPKAAFDLLNHLEF 337 HSP 3 Score: 105.916 bits (263), Expect = 5.714e-52 Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = -2 Query: 993 QYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1166 YDATRAYALSKLANV HTKELA+RL+Q+ ANVTVNCVHPGIVRTRLTREREGL+T + Sbjct: 199 HYDATRAYALSKLANVFHTKELARRLQQMGANVTVNCVHPGIVRTRLTREREGLLTDL 256 HSP 4 Score: 37.3502 bits (85), Expect = 5.714e-52 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: D7M8Y3_ARALL (Short-chain dehydrogenase/reductase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492457 PE=4 SV=1) HSP 1 Score: 301.982 bits (772), Expect = 1.055e-91 Identity = 155/197 (78.68%), Postives = 177/197 (89.85%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 M+ET KYL+G+ G SGFGSKSTAEEVTE C DLRS+TVIITGATSGIGAETARVLAKRGARL+ PARN+KAAEEAK RIVSEFPE+EI+VM LDLSS+ SVRNFV++ ESL+LP+N+LINNAGK AHEHAISEDGIEMTFATNYLGHFLLT LLL M++TA++TGV GRIVNV+S IHGWFSGD+I Y+ IS+ K Sbjct: 1 MIETGKYLLGAAGASGFGSKSTAEEVTENC-DLRSVTVIITGATSGIGAETARVLAKRGARLIFPARNVKAAEEAKERIVSEFPETEIVVMELDLSSIASVRNFVADFESLDLPLNLLINNAGKLAHEHAISEDGIEMTFATNYLGHFLLTNLLLKKMIQTAEETGVQGRIVNVTSGIHGWFSGDLIEYLRLISQPK 196 HSP 2 Score: 104.375 bits (259), Expect = 1.241e-48 Identity = 46/58 (79.31%), Postives = 56/58 (96.55%), Query Frame = -2 Query: 993 QYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1166 Q+DATRAYALSKLANVLHTKEL+ RL++++ANVTVNCVHPG+VRTRLTR+REGL+T + Sbjct: 198 QFDATRAYALSKLANVLHTKELSSRLQKIEANVTVNCVHPGVVRTRLTRDREGLLTDL 255 HSP 3 Score: 104.375 bits (259), Expect = 1.241e-48 Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = -3 Query: 572 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLS 763 QAAATTCYVAT+PRL+N+SGKYF DCNE S LGSNS++A KLWAASEI+V++H+KA FDP S Sbjct: 269 QAAATTCYVATNPRLVNVSGKYFTDCNETTPSGLGSNSSDATKLWAASEILVAQHSKASFDPCS 332 HSP 4 Score: 35.039 bits (79), Expect = 1.241e-48 Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKL+KT+PQ Sbjct: 254 DLVFFLASKLVKTVPQ 269
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: O22985_ARATH (AT4g24050/T19F6_40 OS=Arabidopsis thaliana GN=T19F6.14 PE=2 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 4.906e-91 Identity = 155/197 (78.68%), Postives = 177/197 (89.85%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 M+ET KYL+G+ G SGFGSKSTAEEVTE C DLRSIT +ITGATSGIGAETARVLAKRGARL+ PARN+KAAEEAK RIVSEFPE+EI+VM LDLSS+ SVRNFV++ ESL+LP+N+LINNAGK AHEHAISEDGIEMTFATNYLGHFLLT LLLN M++TA++TGV GRIVNV+S IHGWFSGD+I Y+ IS+ K Sbjct: 1 MIETGKYLLGAAGASGFGSKSTAEEVTENC-DLRSITAVITGATSGIGAETARVLAKRGARLIFPARNVKAAEEAKERIVSEFPETEIVVMKLDLSSIASVRNFVADFESLDLPLNLLINNAGKLAHEHAISEDGIEMTFATNYLGHFLLTNLLLNKMIQTAEETGVQGRIVNVTSGIHGWFSGDLIEYLRLISQPK 196 HSP 2 Score: 103.99 bits (258), Expect = 3.712e-48 Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = -3 Query: 572 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLS 763 QAAATTCYVAT+PRL+N+SGKYF DCNE S LG+NS+EA KLWAASEI+V++H+K FDP S Sbjct: 269 QAAATTCYVATNPRLVNVSGKYFTDCNETTPSGLGTNSSEATKLWAASEILVTQHSKTSFDPCS 332 HSP 3 Score: 103.219 bits (256), Expect = 3.712e-48 Identity = 46/58 (79.31%), Postives = 55/58 (94.83%), Query Frame = -2 Query: 993 QYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1166 Q+DATRAYALSKLANVLHTKEL+ RL+++ ANVTVNCVHPG+VRTRLTR+REGL+T + Sbjct: 198 QFDATRAYALSKLANVLHTKELSSRLQKIGANVTVNCVHPGVVRTRLTRDREGLLTDL 255 HSP 4 Score: 35.039 bits (79), Expect = 3.712e-48 Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKL+KT+PQ Sbjct: 254 DLVFFLASKLVKTVPQ 269 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pagesback to top
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bpback to top |