g.barbadense_cottongen_reftransV1_0092930, g.barbadense_cottongen_reftransV1_0092930 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: A0A0A0K5U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407730 PE=4 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 3.708e-121 Identity = 234/412 (56.80%), Postives = 288/412 (69.90%), Query Frame = -2 Query: 735 ENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRD---------AEIQSSTQEAVIDN---NESXXXXXXXXXXXVTRTIHANSTVNGL------PGTGSYAR-KNSLQGSSNDGHSPP-GRSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 1910 EN G D RKE +LNQ VSR S G E + KR K+DG F ++Y +EPGRS +++KRSS+GVLAPANW+S++K + E ES E SS Q+ + N++KVKKVKL+VGGVTRTI ANS NG P G + K++ Q + N HSP R GL GVPW+DFS+GGF L KE +L GK G+N++GK G A T+RKSKRA K+R+LD +DD+DDEIRYLEKL+TSK Y++D +EP KKQ+KLS +S++EN+G S K K RSD S+D DYEE++E SD + +G K KQRKES++ ME KRE+TLTTRQRALQSSK+ASSA G SLIEFPNGLPPAP RKQKEKL++VEQQLKKAEAAQRRRMQVEKA RESE Sbjct: 58 ENGGGDGTPGRKELSLNQCVSRGSSASGPESEHFLKRSKKDGSFGSYYRSEPGRSANDNKRSSEGVLAPANWRSTSKVSDGMESESSSIDPYGGRYGGESSSSGQKGLYVEELANDNKVKKVKLRVGGVTRTIQANSPPNGTSKGNSQPSDGHRQQHKHNFQENFNGNHSPSERRGGLHGVPWRDFSRGGFGLEKEETLTGKMPGRNSAGKHG--AETLRKSKRASKKRVLD-GDFDDDDDDEIRYLEKLRTSKAYAGYRDDGEEPSKKQRKLSSISSMENYGAS------KHKVRSDIASDDKDYEEDEESASDIDADGNHK-KQRKESIDTLMEGKREMTLTTRQRALQSSKEASSARGGSLIEFPNGLPPAPPRKQKEKLTDVEQQLKKAEAAQRRRMQVEKAARESEA 459 HSP 2 Score: 166.007 bits (419), Expect = 3.708e-121 Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = -3 Query: 305 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQ 643 AEAIRKILGQDSSRKKRE+K+KKRQEE+AQEKA A+ L SNTIR VMGP+GT VTFP D+GFP IF S+P SYP RENCAGPSC NPYKYRDSKSKLPLCSL CYKAIQ+Q Sbjct: 459 AEAIRKILGQDSSRKKREDKVKKRQEELAQEKAANAQKLLSNTIRWVMGPSGTVVTFPNDMGFPSIFESRPCSYPPLRENCAGPSCSNPYKYRDSKSKLPLCSLVCYKAIQEQ 571
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: B9I9I0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11470g PE=4 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 7.762e-111 Identity = 233/432 (53.94%), Postives = 282/432 (65.28%), Query Frame = -2 Query: 735 DSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVNGLPGT-------GSYARKNSLQGSSNDGHSPPGRSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDD----DEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 1997 DS ++T++ + S LS +PPSDD+SK SSDENA N +RKEF LNQ V H R+ + +N+ S +G LAPANW+S +K KE ++ESR A + + NESK KKVK KVG VT TI+ANST NG+P T S R+ + +D PG LQGVPWK+FS+GGF LGKE LMGKTSGKN +GKQG+ RK+KRAPKR +LDGEF EDD+DDEIRYLEKLK K+ +KEDD DE KKQ+KLS + ++ G S KD K+ RSD+ ED D EE+EP+SD E G KK KQ+KE VE + KRE+TLT RQRALQSSKD SS P ++LIEFPNGLPPAPS+KQKEKL+EVEQQ KKAEAAQRRR+QVEKA RESE Sbjct: 29 DSQTFTDNYDRSSLSISPPSDDMSKASSDENAD---NCRRKEFGLNQSV--------------HPRR-------SVVNNK---------TSREGALAPANWRSKSKLKECMDVESRTANMYCGR-----NGNESKFKKVKFKVGDVTHTINANSTTNGVPSTKNPRFSDTSNTRQKLISHLISDLIIEPG---LQGVPWKEFSRGGFSLGKEDFLMGKTSGKNTAGKQGNKYE--RKNKRAPKRHVLDGEFGEDDDDDEIRYLEKLKL-KVPSGHKEDDGNDDDESSKKQRKLSTLGSI---GASRLVKDGKKISRSDQAPEDED-YEEEEPLSDGEFAGSKK-KQKKEYVESLTDGKRELTLTKRQRALQSSKDGSSVPDANLIEFPNGLPPAPSKKQKEKLTEVEQQSKKAEAAQRRRLQVEKAARESEA 411 HSP 2 Score: 169.474 bits (428), Expect = 7.762e-111 Identity = 93/117 (79.49%), Postives = 101/117 (86.32%), Query Frame = -3 Query: 293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643 AEAIRKILGQDSSRKKREEK+KKR EE+AQEKA AEM AS+TIR VMGP GT VTFP+++G P IF+SKP SYP PRE CAGPSC NPYKYRDSKSKLPLCSLQCYKAIQ+Q E Sbjct: 411 AEAIRKILGQDSSRKKREEKVKKRLEELAQEKATNAEMHASSTIRWVMGPTGTVVTFPKEMGLPSIFDSKPCSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAIQQQSQHE 527
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: K4AXI0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g079350.2 PE=4 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 5.508e-98 Identity = 218/471 (46.28%), Postives = 272/471 (57.75%), Query Frame = -2 Query: 735 MEESG-SRFNGANNAVXXXXXXXXXXP--DSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQ-----HVSRISPDIGFEGDKSHKRKKQDGGFNAFYDN-EPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYARKNSLQGS-------SNDGHSPPG----RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDE---KRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKR-EITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2075 M+ESG +RF G N VRKKRS RP + + E ++ SPL+ EN DAN+ RK FNLN VSR+ D F +K +DGG + Y N +PG + + SS ++ + Q+ V N++K+KKVKLKVGGVTRTI + +G G G +L GS S D S G +SGLQG+ +D +G F GK G MGK NA K GD + RKSKR PKRR+ + F ED DDEIRYLEKLKTSKIS YK+ ++E K + +SRVS V F KDE + + +S++ SEDT YE E E VSD E EGKKK+KQRKES + S+++ R E+TLTTRQRAL SSKD+S+A +S IEFPNGLPPAP RKQKEKL++VEQQLKKAEAAQ+RRMQ EKA RESE Sbjct: 1 MDESGGTRFEGLNATVRKKRSLMLRRPRPEKPFFHEGRDQSPLTPVSDDFGRVSSD--ENID-DANAGRKMFNLNHCMSRGSVSRVDEDYTF-------KKNKDGGSSLLYSNGDPGDDTY------------SQYGSSLRQ-------------TGTVQDGV--GNDNKLKKVKLKVGGVTRTIQTKTDSHGAYGGGLSTNARALDGSQPRQKSTSQDTSSKDGLSEKKSGLQGIMSRDSPKGSFAAGKGGD-MGKMPMTNAFEKGGDKSDPTRKSKRVPKRRVSEW-FDEDGEDDEIRYLEKLKTSKIS-GYKDFEEESTNK-RSVSRVSKVSKF-----EKDENVGRSRKKSEQGSEDTAYEVE-EFVSDGEAEGKKKQKQRKESSDSSIDAMRGEMTLTTRQRALLSSKDSSAAASASQIEFPNGLPPAPPRKQKEKLTDVEQQLKKAEAAQKRRMQNEKAARESEA 424 HSP 2 Score: 167.548 bits (423), Expect = 5.508e-98 Identity = 90/116 (77.59%), Postives = 103/116 (88.79%), Query Frame = -3 Query: 296 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMA 643 AEAIRKILGQDS+RKKRE+KIKKRQEE+AQEKA K +MLA +TIR+VMGP GT VTFP D+G P IF+SKP SYP PRE CAGPSC NPYKYRDSK+KLPLCSLQCYKAI++++ A Sbjct: 424 AEAIRKILGQDSNRKKREDKIKKRQEELAQEKAAKEQMLAKSTIRVVMGPTGTVVTFPEDMGLPHIFDSKPCSYPPPREQCAGPSCVNPYKYRDSKTKLPLCSLQCYKAIREKEQA 539
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: M1AI76_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009046 PE=4 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 2.134e-97 Identity = 194/407 (47.67%), Postives = 238/407 (58.48%), Query Frame = -2 Query: 735 DANSKRKEFNLNQHVSR-----ISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYARKNSLQGS-------SNDGHSPPG----RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDE---KRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKR-EITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 1895 DAN+ RK FNLN +SR + D F +K +DGG + Y N + T + S L + Q+ V N+SK+KKVKLKVGGVTRTI + +G G G +L GS S D S G +SGLQG+ +D +G F GK MGKT NA K D + RKSKR PKRR+ + F ED+ DDEIRYLEKLKTSKIS YK+ ++E K + +SRVS V F KDE + + +S++ SEDT YE E E VSD E EGKKK+KQRKES + S+++ R E+TLTTRQRAL SSKD+S+A S IEFPNGLPPAP RKQKEKL++VEQQLKKAEAAQ+RRMQ EKA RESE Sbjct: 61 DANAGRKMFNLNHCMSRGSASRVDEDYTF-------KKTKDGGSSLLYSN-------------------GDPGDDTYSQHGSSLRQ-----PGTVQDGV--GNDSKLKKVKLKVGGVTRTIQTKTDSHGAYGGGLSTNARALDGSQPRQKSTSQDTSSKDGLSEKKSGLQGIMSRDSPKGSFAAGK--GDMGKTPMTNAFEKGSDKSDPTRKSKRVPKRRVSEW-FDEDEKDDEIRYLEKLKTSKIS-GYKDFEEELTNK-RSVSRVSKVSKF-----EKDENVGRSRKKSEQGSEDTAYEVE-EFVSDGEAEGKKKQKQRKESSDSSIDTMRGEMTLTTRQRALLSSKDSSAASTVSQIEFPNGLPPAPPRKQKEKLTDVEQQLKKAEAAQKRRMQNEKAARESEA 423 HSP 2 Score: 167.548 bits (423), Expect = 2.134e-97 Identity = 89/116 (76.72%), Postives = 103/116 (88.79%), Query Frame = -3 Query: 296 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMA 643 AEAIRKILGQDS+RKKRE+KIKKRQEE+AQEKA K +MLA +T+R+VMGP GT VTFP D+G P IF+SKP SYP PRE CAGPSC NPYKYRDSK+KLPLCSLQCYKAI++++ A Sbjct: 423 AEAIRKILGQDSNRKKREDKIKKRQEELAQEKAAKEQMLAKSTVRVVMGPTGTVVTFPEDMGLPHIFDSKPCSYPPPREQCAGPSCVNPYKYRDSKTKLPLCSLQCYKAIREKEQA 538
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: F6I4T0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01140 PE=4 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.236e-94 Identity = 220/434 (50.69%), Postives = 277/434 (63.82%), Query Frame = -2 Query: 735 ENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKR-KKQDGGF--------NAFYD--NEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVIDN--NESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYA-------------RKNSLQGSSNDGHSPPGR--SGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISP----AYKEDDDEPGKKQKKLSRV----------SNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 1910 EN G ++S+ KE LNQ S+ S + G+ + K K +DGGF N + E SGS+SKR S+GVLAPANWK ++ S + S + S EAV+D NE+K+KKVKLKVGGVT TIHA ST +G GS + +K LQ S+D +SPP SGL+GVPWKDFS+ GF + K SL GK + S KQ VRKSKR PK+R+LDG ++DND+EI+YLEKLKTSK+S Y++++++ G+KQ+K+SRV +V +F SS E +K RS R ED DY EE+E +SD E E KKK K RKE V+ S +SKRE+ +TTRQRALQ+SKD S++ G + IEFPNGLPPAP RKQKEKL+EVEQQLKKAEAAQRRRMQVEKA RESE Sbjct: 59 ENTGYVSSSRNKE--LNQCSSKAS-SVNVTGETTQKMFKNEDGGFGESNEASINGSFQGLTEQRHSGSDSKRCSEGVLAPANWK--IRDTHTSGMISGTCD---SGPEAVVDGLGNENKLKKVKLKVGGVTHTIHAKSTSDGASVGGSSSTKSSRASDAPRQRQKLILQDDSDDDNSPPPVKGSGLRGVPWKDFSRSGFSVAKGDSLKGKMPEEGFSMKQAGKYEPVRKSKRVPKKRVLDGAEDDEDNDEEIKYLEKLKTSKVSTDYGAEYEDEEEDGGRKQRKISRVLKRNGNGQYNVDVGDF-GSSKGSKESKKSRSGRAYEDIDYMEEEEALSDGEPETKKK-KLRKEFVDSSGDSKREMAVTTRQRALQTSKDISASIGVNFIEFPNGLPPAPPRKQKEKLTEVEQQLKKAEAAQRRRMQVEKAARESEA 482 HSP 2 Score: 152.525 bits (384), Expect = 2.236e-94 Identity = 85/115 (73.91%), Postives = 97/115 (84.35%), Query Frame = -3 Query: 299 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQM 643 AEAIRKILGQDSSRKKREEKIKKRQEE+AQE+A A +++NT+R VMGP GTTVTFP ++G P IF K SSYP PRE CAGPSC NPYKYRDSKSKLPLCSLQCY+A+ + + Sbjct: 482 AEAIRKILGQDSSRKKREEKIKKRQEELAQERAANALTISANTVRWVMGPTGTTVTFPNEMGLPSIFEPKLSSYPPPREKCAGPSCMNPYKYRDSKSKLPLCSLQCYRALHAKTL 596 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092930 ID=g.barbadense_cottongen_reftransV1_0092930; Name=g.barbadense_cottongen_reftransV1_0092930; organism=Gossypium barbadense; type=contig; length=2655bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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