g.barbadense_cottongen_reftransV1_0092930, g.barbadense_cottongen_reftransV1_0092930 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092930
Unique Name	g.barbadense_cottongen_reftransV1_0092930
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2655

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: A0A067H535_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046352mg PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 2.724e-134
Identity = 272/462 (58.87%), Postives = 325/462 (70.35%), Query Frame = -2

Query:  735 MEE-SGSRFNGANNAVXXXXXXX--XXXPDSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKR-KKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVN-----------GLPGTGSYARKNSLQGSSNDGHSPPGRSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2075
            MEE  GS  +G NNAVRKKR+    RPRPDS S+ ES++ +P     PSDDVS+ S DEN G D   KRKEFNLNQ +S  S   G EG+K  KR KK+DGGFN FY+NEP RSG N+KRSS+GVLAPANW+ + + + + +L         +  +A +DN   KVK     V   TRTIHANST N             P   S  +K +LQG  N   +   R GLQG+PWKDFS+GG   GKE  LM K+SGKN   + G  +G+VRKSKR PK+R L GE  +D+ DDEIRYLEKLKTSK+   YKE+D+E GKK +K SRVS++EN G   S KD K+K R D VSE+ DYEEE+EPVSD E+ GK ++KQ+KESV+  M+ KRE+TLTTRQRALQSSKDAS+AP SSLIEFPNGLPPAP RKQKEKL++VEQQLKKAEAAQRRRMQVEKANRESE 
Sbjct:    1 MEEFGGSLRDGINNAVRKKRTQVFRRPRPDSQSFVESRDSTP-----PSDDVSRASGDENPGCDIKPKRKEFNLNQCISGFSSAFGTEGEKPQKRSKKEDGGFNVFYNNEPARSGYNNKRSSEGVLAPANWRRNGESQSFRQL--------GANFDAGLDNKVKKVKLKVGGV---TRTIHANSTANVATGGGSSKGSQSPDDSSLWKKQNLQG--NIDSAVDKRGGLQGIPWKDFSRGGLGFGKEDFLMEKSSGKNPIARHGGQSGSVRKSKRVPKKRELGGE-FDDEEDDEIRYLEKLKTSKVIGRYKEEDEESGKKLQKFSRVSSLENVGILRSGKDGKKKSRPDIVSEEFDYEEEEEPVSDGEVGGKMQKKQKKESVDSLMDVKREMTLTTRQRALQSSKDASAAPSSSLIEFPNGLPPAPPRKQKEKLTDVEQQLKKAEAAQRRRMQVEKANRESEA 443

HSP 2 Score: 169.859 bits (429), Expect = 2.724e-134
Identity = 91/117 (77.78%), Postives = 103/117 (88.03%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            A+AIRKILGQDS R+KR++++KKRQEE+AQEKA  A MLASNTIR V GP GT VTFP D+GFP IF+SKPSSYP PRENCAGPSC NPYKYRDSKSK+PLCSLQCYKAIQ++  AE
Sbjct:  443 AQAIRKILGQDSKREKRKKQMKKRQEELAQEKAANAMMLASNTIRWVSGPTGTFVTFPEDMGFPSIFDSKPSSYPPPRENCAGPSCTNPYKYRDSKSKVPLCSLQCYKAIQEKLQAE 559

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BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: V4U161_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023762mg PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 2.724e-134
Identity = 272/462 (58.87%), Postives = 325/462 (70.35%), Query Frame = -2

Query:  735 MEE-SGSRFNGANNAVXXXXXXX--XXXPDSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKR-KKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVN-----------GLPGTGSYARKNSLQGSSNDGHSPPGRSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2075
            MEE  GS  +G NNAVRKKR+    RPRPDS S+ ES++ +P     PSDDVS+ S DEN G D   KRKEFNLNQ +S  S   G EG+K  KR KK+DGGFN FY+NEP RSG N+KRSS+GVLAPANW+ + + + + +L         +  +A +DN   KVK     V   TRTIHANST N             P   S  +K +LQG  N   +   R GLQG+PWKDFS+GG   GKE  LM K+SGKN   + G  +G+VRKSKR PK+R L GE  +D+ DDEIRYLEKLKTSK+   YKE+D+E GKK +K SRVS++EN G   S KD K+K R D VSE+ DYEEE+EPVSD E+ GK ++KQ+KESV+  M+ KRE+TLTTRQRALQSSKDAS+AP SSLIEFPNGLPPAP RKQKEKL++VEQQLKKAEAAQRRRMQVEKANRESE 
Sbjct:    1 MEEFGGSLRDGINNAVRKKRTQVFRRPRPDSQSFVESRDSTP-----PSDDVSRASGDENPGCDIKPKRKEFNLNQCISGFSSAFGTEGEKPQKRSKKEDGGFNVFYNNEPARSGYNNKRSSEGVLAPANWRRNGESQSFRQL--------GANFDAGLDNKVKKVKLKVGGV---TRTIHANSTANVATGGGSSKGSQSPDDSSLWKKQNLQG--NIDSAVDKRGGLQGIPWKDFSRGGLGFGKEDFLMEKSSGKNPIARHGGQSGSVRKSKRVPKKRELGGE-FDDEEDDEIRYLEKLKTSKVIGRYKEEDEESGKKLQKFSRVSSLENVGILRSGKDGKKKSRPDIVSEEFDYEEEEEPVSDGEVGGKMQKKQKKESVDSLMDVKREMTLTTRQRALQSSKDASAAPSSSLIEFPNGLPPAPPRKQKEKLTDVEQQLKKAEAAQRRRMQVEKANRESEA 443

HSP 2 Score: 169.859 bits (429), Expect = 2.724e-134
Identity = 91/117 (77.78%), Postives = 103/117 (88.03%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            A+AIRKILGQDS R+KR++++KKRQEE+AQEKA  A MLASNTIR V GP GT VTFP D+GFP IF+SKPSSYP PRENCAGPSC NPYKYRDSKSK+PLCSLQCYKAIQ++  AE
Sbjct:  443 AQAIRKILGQDSKREKRKKQMKKRQEELAQEKAANAMMLASNTIRWVSGPTGTFVTFPEDMGFPSIFDSKPSSYPPPRENCAGPSCTNPYKYRDSKSKVPLCSLQCYKAIQEKLQAE 559

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BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: V7D1X1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G213800g PE=4 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 5.142e-132
Identity = 283/468 (60.47%), Postives = 338/468 (72.22%), Query Frame = -2

Query:  735 GSRFNGANNAVXXXXXXXXXXP--DSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVID-----------NNESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYAR----------KNSLQGSSNDGHSPPG-RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSME-SKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2063
            G+RF+G +NAVR+KRS    RP  DS   ++ Q  SPLSSTP  D     S  EN G DANSKRKEFNLN  VS+ S   G E DKSHK+ K+DGGF AFY+NEPGRSG ++KR S+GVLAPANW+ S+K K+  +LESR+A++        ++            NE++VKKVKLKVGGVT TI ANS  N   G+GS  +          +   Q +S+D +SP   RSGLQGVPWKDFS+GGF LGKE SLMGK SGKN+S K GD +  VRKSKR PKRR+LDGEF +DD DDEIRYLEKLKTSK+S  Y+ D++E  KK +KL   SN+EN  ++ S KD K+K RSDRV EDTDYE+E+E  S+ ELE KKK+KQRKESV+  M+ +KREITLTTRQRALQ S   +SA  +SLIEFPNGLPPAP RKQKEKLSEV+QQ+KKAEAAQRRRMQVEKA RESE 
Sbjct:    6 GTRFDGLSNAVRRKRSQTSRRPRPDSQPVSDGQELSPLSSTPSEDAGKISSD-ENVGYDANSKRKEFNLNHCVSQTSSATGAEDDKSHKKSKKDGGFQAFYNNEPGRSGLHNKRCSEGVLAPANWRGSSKAKDSLDLESRNADLYGGRNPESVNLAQFGGPQDGLGNENRVKKVKLKVGGVTHTIQANSAANSASGSGSTMKSSRSSDASRPRQKQQSNSDDNNSPSDKRSGLQGVPWKDFSRGGFGLGKEESLMGKISGKNSSSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDEDDEIRYLEKLKTSKVSAVYR-DEEELSKKHRKL---SNMENAASTRSGKDSKKKSRSDRVYEDTDYEDEEESGSEGELEDKKKKKQRKESVDVLMDGNKREITLTTRQRALQ-SSKDASASSASLIEFPNGLPPAPPRKQKEKLSEVDQQVKKAEAAQRRRMQVEKAARESEA 467

HSP 2 Score: 168.703 bits (426), Expect = 5.142e-132
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            AEAIRKILGQDSSRKKREEKIKKRQEEMAQEKA  A M ASNTI+  MGP GT VTFP ++GFP +FNSKP SYP PRE CAGPSC NPYKYRDSKSKLPLCSLQCYK++Q++ +AE
Sbjct:  467 AEAIRKILGQDSSRKKREEKIKKRQEEMAQEKAANARMHASNTIKYTMGPTGTIVTFPEEMGFPSLFNSKPVSYPPPREKCAGPSCSNPYKYRDSKSKLPLCSLQCYKSVQEKVVAE 583

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BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: A0A0B2QC69_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_041558 PE=4 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 1.201e-131
Identity = 280/467 (59.96%), Postives = 330/467 (70.66%), Query Frame = -2

Query:  735 GSRFNGANNAVXXXXXXXXXXP--DSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVID-----------NNESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYARKNS---------LQGSSNDGHSPPG-RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLL-DGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2063
            G++F+G +NAVR+KRS    RP  DS   +E Q  SPLSSTP  D     S  EN G DANSKRKEFNLN  VS+ S   G E +KSHK+ K+DGGF+ FY NEP RSGSN+KR S+GVLAPANWK S+K K+  + E R+A++        +             NE++VKKVKLKVGGVTRTI ANS  NG  G+G+  +  S          Q +S+D +SP   RS LQGVPWKDFS+GGF LGKE SLMGK SGKN + K GD +  VRKSKR PKRR+L      +DD DDEIRYLEKLKTSK+S  Y+ D++E  KK +KLS VSN+EN     S KD K++ RSDRV EDTDYE+EDE  SD ELE KKK+KQRKESV+  M+SKRE+TLTTRQRALQ S   +SA  +S+IEFPNGLPPAP RKQKEKLSEV+QQLKKAEAAQRRRMQVEKA RESE 
Sbjct:    6 GTQFDGLSNAVRRKRSQTSRRPRPDSQHASEGQELSPLSSTPSEDAGKASSD-ENVGYDANSKRKEFNLNHCVSQTSSGTGAEEEKSHKKSKKDGGFHTFYSNEPVRSGSNNKRCSEGVLAPANWKGSSKTKDSLDSELRNADLYGGRNPESMSLAQFGGSQDGLGNENRVKKVKLKVGGVTRTIQANSATNGASGSGTTMKSRSSDASRPRQKQQSNSDDNNSPSDKRSRLQGVPWKDFSRGGFGLGKEESLMGKISGKNTTSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYR-DEEELNKKHRKLSSVSNLEN-AAPRSGKDGKKRSRSDRVYEDTDYEDEDESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQ-SSKDASASSASVIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEA 468

HSP 2 Score: 162.54 bits (410), Expect = 1.201e-131
Identity = 92/117 (78.63%), Postives = 100/117 (85.47%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            AEAIRKILGQDSSRKKREEKIKKRQEE+AQE+A  A MLASNTIR  MGP GT VTF  ++G P I NSKP SYP PRE CAGPSC NPYKYRDSKSKLPLCSLQCYKA+Q++ +AE
Sbjct:  468 AEAIRKILGQDSSRKKREEKIKKRQEELAQERAANALMLASNTIRYTMGPTGTFVTFSEEMGLPSILNSKPVSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKVVAE 584

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BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: I1NBD4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 1.914e-131
Identity = 283/470 (60.21%), Postives = 333/470 (70.85%), Query Frame = -2

Query:  735 GSRFNGANNAVXXXXXXXXXXP--DSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSS-------------TQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYAR----------KNSLQGSSNDGHSPPG-RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLL-DGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2063
            G+RF+G +NAVR+KRS    RP  DS   +E Q  SPLSSTP  D     S  EN G DANSKRKEFNLN  VS+ S   G E DKSHK+ K+D GF+ FY+NEP RSG N+KR S+GVLAPANWK S+K K+  + E R+A++                +Q+ +   NE++VKKVKLKVGGVTRTI ANS  NG  G+GS  +          +   Q +S+D +SP   RS LQGVPWKDFS+GGF LGKE SLMGK SGKN S K GD +  VRKSKR PKRR+L      +DD DDEIRYLEKLKTSK+S  Y+ D++E  KK ++LS VSN+EN     SAKD K++ RSDRV EDTDYE+E+E  SD ELE KKK+KQRKESV+  M+SKRE+TLTTRQRALQ S   +SA  SSLIEFPNGLPPAP RKQKEKLSEV+QQLKKAEAAQRRRMQVEKA RESE 
Sbjct:    6 GTRFDGLSNAVRRKRSQTSRRPRPDSQHASEGQELSPLSSTPSEDTGKASSD-ENVGYDANSKRKEFNLNHCVSQTSSGTGAEDDKSHKKSKKDEGFHTFYNNEPVRSGLNNKRCSEGVLAPANWKGSSKVKDSLDSELRNADLYGGRNPESMGLAQFGGSQDGL--GNENRVKKVKLKVGGVTRTIQANSATNGASGSGSTMKNSRSSDASRPRQKQQSNSDDNNSPSDKRSRLQGVPWKDFSRGGFGLGKEESLMGKISGKNTSSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYR-DEEELSKKHRRLSSVSNLEN-AAPRSAKDGKKRSRSDRVYEDTDYEDEEESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQ-SSKDASASSSSLIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEA 469

HSP 2 Score: 161.77 bits (408), Expect = 1.914e-131
Identity = 91/117 (77.78%), Postives = 100/117 (85.47%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            AEAIRKILGQDSSRKKREEKIKKRQEE+AQE+A  A MLASNTIR  MGP GT VTF  ++G P + NSKP SYP PRE CAGPSC NPYKYRDSKSKLPLCSLQCYKA+Q++ +AE
Sbjct:  469 AEAIRKILGQDSSRKKREEKIKKRQEELAQERAANALMLASNTIRYTMGPTGTFVTFSEEMGLPSVLNSKPVSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKVVAE 585

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BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: A0A0B2SGQ1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002032 PE=4 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 1.914e-131
Identity = 283/470 (60.21%), Postives = 333/470 (70.85%), Query Frame = -2

Query:  735 GSRFNGANNAVXXXXXXXXXXP--DSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSS-------------TQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYAR----------KNSLQGSSNDGHSPPG-RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLL-DGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2063
            G+RF+G +NAVR+KRS    RP  DS   +E Q  SPLSSTP  D     S  EN G DANSKRKEFNLN  VS+ S   G E DKSHK+ K+D GF+ FY+NEP RSG N+KR S+GVLAPANWK S+K K+  + E R+A++                +Q+ +   NE++VKKVKLKVGGVTRTI ANS  NG  G+GS  +          +   Q +S+D +SP   RS LQGVPWKDFS+GGF LGKE SLMGK SGKN S K GD +  VRKSKR PKRR+L      +DD DDEIRYLEKLKTSK+S  Y+ D++E  KK ++LS VSN+EN     SAKD K++ RSDRV EDTDYE+E+E  SD ELE KKK+KQRKESV+  M+SKRE+TLTTRQRALQ S   +SA  SSLIEFPNGLPPAP RKQKEKLSEV+QQLKKAEAAQRRRMQVEKA RESE 
Sbjct:    6 GTRFDGLSNAVRRKRSQTSRRPRPDSQHASEGQELSPLSSTPSEDTGKASSD-ENVGYDANSKRKEFNLNHCVSQTSSGTGAEDDKSHKKSKKDEGFHTFYNNEPVRSGLNNKRCSEGVLAPANWKGSSKVKDSLDSELRNADLYGGRNPESMGLAQFGGSQDGL--GNENRVKKVKLKVGGVTRTIQANSATNGASGSGSTMKNSRSSDASRPRQKQQSNSDDNNSPSDKRSRLQGVPWKDFSRGGFGLGKEESLMGKISGKNTSSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYR-DEEELSKKHRRLSSVSNLEN-AAPRSAKDGKKRSRSDRVYEDTDYEDEEESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQ-SSKDASASSSSLIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEA 469

HSP 2 Score: 161.77 bits (408), Expect = 1.914e-131
Identity = 91/117 (77.78%), Postives = 100/117 (85.47%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            AEAIRKILGQDSSRKKREEKIKKRQEE+AQE+A  A MLASNTIR  MGP GT VTF  ++G P + NSKP SYP PRE CAGPSC NPYKYRDSKSKLPLCSLQCYKA+Q++ +AE
Sbjct:  469 AEAIRKILGQDSSRKKREEKIKKRQEELAQERAANALMLASNTIRYTMGPTGTFVTFSEEMGLPSVLNSKPVSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKVVAE 585

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: B9RND2_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_1346940 PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 5.431e-129
Identity = 226/404 (55.94%), Postives = 279/404 (69.06%), Query Frame = -2

Query:  735 VDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELES--------RDAEIQSSTQEAVIDN---NESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYAR----KNSLQGSSNDGHSP-PGRSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 1898
            V+++S+RKEFNLNQ +S                 K+  G +AFY N+ GRS  ++KRSS+GVLAPANWK+++K KE  E ES        R+ E QS  Q  V+ +   NE+KVKKVKLKVGGVTRTIHANST NG      ++     K+ LQG+S   HS    R+GLQGVPWKDF   GF LGKE S MGK S KNA GKQG+ + T RKSKR PKRR+LD E  ED  DDEIRYLEKLKT KI+  YK+++    K  +K  R+S++E+ G    AK+ K+K   DR SEDT YEEE++  S+ ELEG  ++KQ+KESV+  M+SKRE+TLTTRQRALQ S    S   ++LIEFPNGLPPAPSRKQKEKL+E+EQQLKKAEAAQ+RR+QVE A RES+ 
Sbjct:   62 VNSSSRRKEFNLNQCMSW---------------NKESEGSDAFYSNDSGRSAFSNKRSSEGVLAPANWKNTSKVKESFEAESINANIYSGRNGESQSLEQSGVLVDSLGNENKVKKVKLKVGGVTRTIHANSTTNGSTNNSRFSENSRLKHKLQGNSEQYHSILEKRTGLQGVPWKDFCTSGFSLGKESSSMGKISEKNAFGKQGEKSETARKSKRVPKRRVLDEEIGEDYEDDEIRYLEKLKTPKIAARYKDNE----KSSRKQQRLSSLESVGALKLAKNGKKKSSLDRASEDTGYEEEEDLASEGELEGNNRKKQKKESVDVLMDSKREMTLTTRQRALQ-SSRDGSTSAANLIEFPNGLPPAPSRKQKEKLTELEQQLKKAEAAQKRRIQVENAERESQA 445

HSP 2 Score: 158.303 bits (399), Expect = 5.431e-129
Identity = 91/117 (77.78%), Postives = 96/117 (82.05%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            AEAIRKILGQDSSRKKREEKIKKRQEE+AQEKA  A  L SNTIR VMGP GT +TF  D+G P IF SKP SYP PRE CAGPSC NPYKYRDSKS LPLCSLQCYK +Q+Q  AE
Sbjct:  445 AEAIRKILGQDSSRKKREEKIKKRQEELAQEKAANALTLPSNTIRCVMGPTGTVMTFSNDMGLPGIFESKPCSYPPPREKCAGPSCSNPYKYRDSKSMLPLCSLQCYKTVQEQMQAE 561

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: A0A067JZS3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14039 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 6.434e-127
Identity = 234/391 (59.85%), Postives = 287/391 (73.40%), Query Frame = -2

Query:  735 VSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEI------QSSTQEAVIDN---NESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYA--------RKNSLQGSSNDGHSPPG-RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 1853
            +S++S     EG+KS+ R K+ GG NAF  N+PGRS  NSKR+S+GVLAPANW+S++K KE  E ES  A++      +SS Q  VI +   NE+KVKKVKL+V GVT TIHA+ST NG   T S          +K +LQ +  + +S    RSGLQGVPWKDFS+GGF LGK+ + MG+ SGKN SGKQG+ +  VRKSKR PKRR+LDG+  E+  DDEIRYLEKLKT KI+ AYK+ ++   K+QK LS    VE  G SSS KD K+K   +R SEDTDYE+E++  S+ E+EG KK+KQ++ESV+  M+SKRE+TLTTRQRALQ S    SAPGS+LIEFPNGLPPAPSRKQKEKL+EVEQQLKKAEAAQRRRMQVEKA RESE 
Sbjct:    1 MSKVSSATEVEGEKSYIRNKEFGGLNAFSHNDPGRSMINSKRASEGVLAPANWRSTSKVKESFESESSSADVYIGRNGESSGQSGVILDGLGNENKVKKVKLRVRGVTHTIHADSTTNGAISTKSSRFSETSRSRQKQNLQCNLQEDNSILDKRSGLQGVPWKDFSKGGFILGKDSTSMGRISGKNTSGKQGEKSEPVRKSKRVPKRRVLDGDIGEEYEDDEIRYLEKLKTPKIAAAYKDYEESSTKQQKLLS----VEKVGASSSVKDGKKKSTLERASEDTDYEDEEDLASEGEVEGNKKKKQKRESVDALMDSKREMTLTTRQRALQ-SSKDGSAPGSNLIEFPNGLPPAPSRKQKEKLTEVEQQLKKAEAAQRRRMQVEKAARESEA 386

HSP 2 Score: 158.303 bits (399), Expect = 6.434e-127
Identity = 88/117 (75.21%), Postives = 97/117 (82.91%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            AEAIRKILGQDSSRKKRE+KIKKRQEE+AQEKA  A +L +NTIR VMGP GT VTF  D+G P +F+SKP SYP  RE C GPSC NPYKYRDSKSKLPLCSL+CYKA+Q Q  AE
Sbjct:  386 AEAIRKILGQDSSRKKREDKIKKRQEELAQEKAANALVLGTNTIRWVMGPTGTVVTFSNDMGLPSLFDSKPCSYPPEREKCVGPSCTNPYKYRDSKSKLPLCSLRCYKAVQGQLGAE 502

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: F6HZA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g01560 PE=4 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.323e-125
Identity = 293/498 (58.84%), Postives = 343/498 (68.88%), Query Frame = -2

Query:  735 MEE-SGSRFNGANNAVXXXXXXXXXXP--DSLSYTESQNHSPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKR-KKQDGGFNAFYD---------------NEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESR--------DAEIQSSTQEAV-IDN--NESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYA------------RKNSLQGSSNDGHSPPG-RSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNV-----ENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEP---VSDSELEGKKKRKQRKESVEPSMESKREITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2075
            MEE  G+R +G  N VRKKRS    RP  +S  +TES +HS   STPPSDDV KVSSDENA  DA+S+RKEFNLNQ  ++       E +  +KR KK+DGG NA +D               NE GR   N+KR S+GVLAPANWKS  K KE  E +SR        + E QSS Q  V +D   +ESKVKKVKLKVGGVTRTI A S  NG    GS              +K  LQ +S+D HSPP  RSGLQG+PW+DFS+GGF LGKE S MGK SGK     QGD +  VRKSKR PKRR+LDG F +D++D EIRYLEKLKTSK++  +K+D++E GKK +++S++  +     EN G+S   KD K+K RSDRVSEDTDYEEE E    +SDSELE  K +K RKESV+   ESKRE+TLTTRQRALQS KDASSAPG+SLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRR+MQVEKA RESE 
Sbjct:    1 MEEFGGTRLDGIGNTVRKKRSRASRRPRPESQPHTESWDHS---STPPSDDVCKVSSDENAACDASSRRKEFNLNQCAAKAVSVGRAECESPNKRIKKEDGGCNAMFDCEGLGDSNESGLRDNNEQGRGRVNNKRCSEGVLAPANWKSIGKVKESPEPQSRATDHPSQRNGESQSSRQSGVDLDGSGHESKVKKVKLKVGGVTRTIQAQSLSNGAASGGSSRKSSRSLDAPRPRQKLILQDNSDDSHSPPDKRSGLQGIPWRDFSRGGFSLGKEDSSMGKISGK-----QGDKSDPVRKSKRVPKRRVLDGAFDDDEDD-EIRYLEKLKTSKVTAGHKDDEEESGKKPRRVSKMRAIDGKKDENLGSS---KDGKKKSRSDRVSEDTDYEEEQEDEEVISDSELEENKMKKLRKESVDSLSESKREMTLTTRQRALQSGKDASSAPGASLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRKMQVEKAARESEA 486

HSP 2 Score: 154.836 bits (390), Expect = 4.323e-125
Identity = 84/117 (71.79%), Postives = 96/117 (82.05%), Query Frame = -3

Query:  293 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQMAE 643
            AEAIRKILGQDS RKKRE+K+KKR+EE+AQE+A  A  L SNTIR VMGP GT +TF +D+G P +F+ KP +YP PRE CAGPSC NPYKYRDSKSKLPLCSL CYKAI K+  AE
Sbjct:  486 AEAIRKILGQDSGRKKREDKMKKRREELAQERAANALTLPSNTIRCVMGPTGTVLTFSKDMGLPSLFDPKPCNYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLHCYKAIHKRMQAE 602

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Match: A0A059A9R8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03549 PE=4 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.064e-122
Identity = 255/466 (54.72%), Postives = 317/466 (68.03%), Query Frame = -2

Query:  735 MEESG-SRFNGANNAVXXXXXXXXXXPDSLSYTESQNH-----SPLXXXXXXXXXXXXXXDENAGVDANSKRKEFNLNQHVSRISPDIGFEGDKSHKRKKQDGGFNAFYDNEPXXXXXXXXXXXXGVLAPANWKSSTKEKEWSELESRDAEIQSSTQEAVIDNNESXXXXXXXXXXXVTRTIHANSTVNGLPGTGSYAR------------KNSLQGSSNDGHSPPGRSGLQGVPWKDFSQGGFRLGKEGSLMGKTSGKNASGKQGDHAGTVRKSKRAPKRRLLDGEFSEDDNDDEIRYLEKLKTSKISPAYKEDDDEPGKKQKKLSRVSNVENFGTSSSAKDEKRKHRSDRVSEDTDYEEEDEPVSDSELEGKKKRKQRKESVEPSMESKR-EITLTTRQRALQXXXXXXXXXXXSLIEFPNGLPPAPSRKQKEKLSEVEQQLKKAEAAQRRRMQVEKANRESEV 2075
            MEE G +RF+   +AVRKKR+    RP   SY   ++H     SPLSS P SDD SKVSSD+N G D NS+RKEFNLNQ V R+S   G       K ++ D  F+ FY+NEPGRSG ++KRSS+GVLAPANWKS++K  +      ++ E Q   Q A+  +      KVK     V    H  ST NG   +GS  +            + + +G+ +   S   ++GLQG+PWKDFS+GGFR GKE S  GK SG+N SGKQGD +  VRKSKR PK+RL+DGEF+ DD DDE+RYLEKLKTSKI   ++EDD+   KKQ+KL+ VS++E  G    +KD K+K R DR S+DTDYEE+DE  SD EL G+KK++Q+KESV+  M++ R E+TLTTRQRALQS KDAS A GS  IE+PNGLPPAP+RKQKEKLSEVEQQLKKAEAAQRRR+Q EKA RESE 
Sbjct:    1 MEELGATRFDILGSAVRKKRTRAARRPRPDSYEGHEDHEGHDLSPLSSAPASDDASKVSSDDNIGGDTNSRRKEFNLNQCVIRVSSGAGDSEKLQKKVRRDDEAFDTFYNNEPGRSGFSNKRSSEGVLAPANWKSTSKAPD--NYGGKNGESQGPGQSAMTIDGVGNENKVKKVKLKVGGVTHTISTSNGTHESGSLVKSSRALDSLKPRQRPNFEGNLDGTPSIDKKTGLQGIPWKDFSKGGFRFGKEDSSTGKMSGRNTSGKQGDKSEPVRKSKRVPKKRLMDGEFN-DDEDDELRYLEKLKTSKIGGGFREDDEGTSKKQRKLASVSDIERLGAFKGSKDGKKKPRIDRTSDDTDYEEDDETGSDGELRGRKKKRQKKESVDTLMDNNRKEMTLTTRQRALQSGKDASVAAGS--IEYPNGLPPAPARKQKEKLSEVEQQLKKAEAAQRRRLQNEKAARESEA 461

HSP 2 Score: 151.754 bits (382), Expect = 1.064e-122
Identity = 78/115 (67.83%), Postives = 98/115 (85.22%), Query Frame = -3

Query:  299 AEAIRKILGQDSSXXXXXXXXXXXXXEMAQEKAVKAEMLASNTIRLVMGPAGTTVTFPRDLGFPRIFNSKPSSYPAPRENCAGPSCGNPYKYRDSKSKLPLCSLQCYKAIQKQQM 643
            AEAIRKILGQDSSRKKRE+KIKKR+ E+A+E+A    + AS++IR VMGP GT VTFP ++GFP IF+SK +SYP PRE C GP C NPYKYRDSK++LPLCSLQCY+A+Q++++
Sbjct:  461 AEAIRKILGQDSSRKKREDKIKKRRVELAEERAANESVRASSSIRWVMGPTGTVVTFPNEMGFPSIFDSKSNSYPPPRETCVGPLCNNPYKYRDSKTRLPLCSLQCYRAVQEKKL 575

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0092930 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A067H535_CITSI	2.724e-134	58.87	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4U161_9ROSI	2.724e-134	58.87	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V7D1X1_PHAVU	5.142e-132	60.47	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
A0A0B2QC69_GLYSO	1.201e-131	59.96	Uncharacterized protein OS=Glycine soja GN=glysoja...	[more]
I1NBD4_SOYBN	1.914e-131	60.21	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2SGQ1_GLYSO	1.914e-131	60.21	Uncharacterized protein OS=Glycine soja GN=glysoja...	[more]
B9RND2_RICCO	5.431e-129	55.94	Protein binding protein, putative OS=Ricinus commu...	[more]
A0A067JZS3_JATCU	6.434e-127	59.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
F6HZA4_VITVI	4.323e-125	58.84	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A059A9R8_EUCGR	1.064e-122	54.72	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 418..448
None	No IPR available	PANTHER	PTHR21561:SF15	SUBFAMILY NOT NAMED	coord: 9..453
IPR006880	INO80 complex subunit B-like conserved region	PFAM	PF04795	PAPA-1	coord: 429..453 e-value: 8.5E-5 score: 23.1
IPR029523	INO80 complex, subunit Ies2	PANTHER	PTHR21561	FAMILY NOT NAMED	coord: 9..453

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092930 ID=g.barbadense_cottongen_reftransV1_0092930; Name=g.barbadense_cottongen_reftransV1_0092930; organism=Gossypium barbadense; type=contig; length=2655bp
GTGGGACTGAATATTGCTTTATAGCTTAAAATTATTAAGCCAAGAAAGAA
AGAATTGTAGCCTCTCTGGATTGGAATGGAGAGGAATTCTTTTATTTATG
GATTATACTAAAATAAACACAACTAAGATTTTCTTGTACCTGTAATAATT
ACATTAATATTACTCCAAAAAGAAGTTTGCATTTGGCTCTATTTTCTAAT
CCGTCCCTGGGTTGAAATGGAACATAAATGTGCAGAATTTACCACATGCA
CAAGAGGGAAGTGCTGGATTTTCAGCAACACTAGCAGGTAGTTTCAGCCA
TCTGCTGTTTTTGAATTGCCTTGTAGCACTGCAGACTACAAAGAGGTAGC
TTCGACTTTGAATCTCGATATTTGTATGGGTTACCACACGATGGACCCGC
ACAGTTCTCTCGAGGAGCAGGGTAACTAGAGGGTTTGGAGTTAAATATAC
GAGGGAAACCCAAATCCCTGGGAAATGTTACTGTTGTTCCTGCAGGACCC
ATGACCAATCTGATGGTATTTGATGCAAGCATCTCCGCTTTAACAGCCTT
CTCCTGTGCCATCTCTTCCTGACGCTTTTTGATTTTTTCTTCCCGCTTCT
TCCTGCTAGAGTCTTGGCCAAGTATTTTTCTAATAGCCTCAGCCTACATC
AATTAATTCAAACACACTCAATTTTTGCATTGTAGTTCTAAAATCCATAT
GCAAAGACATTGTAATCCCGAAGCAACAGAAACAAACCTCAGATTCCCTA
TTGGCCTTCTCAACTTGCATCCTTCGTCTCTGAGCAGCCTCTGCCTTCTT
TAGCTGCTGCTCCACTTCCGAGAGTTTCTCCTTTTGCTTTCTTGATGGGG
CAGGTGGTAGACCATTTGGAAACTCGATTAAGCTTGAGCCAGGCGCAGAA
GAGGCATCTTTGCTAGACTGAAGAGCCCGTTGACGTGTTGTGAGAGTTAT
TTCCCTCTTACTCTCCATTGATGGCTCAACAGATTCTTTCCTTTGCTTCC
TTTTCTTCTTACCTTCAAGCTCACTATCAGATACTGGTTCATCTTCCTCC
TCATAATCGGTATCCTCAGAAACCCTATCTGATCTATGCTTCCTTTTCTC
ATCTTTGGCAGAACTTGAAGTGCCAAAGTTTTCTACGTTGGAAACCCTGG
AGAGTTTTTTCTGTTTCTTGCCTGGTTCATCATCATCTTCCTTATATGCT
GGACTAATCTTCGAAGTTTTAAGTTTTTCCAAGTAACGGATCTCATCATC
ATTGTCATCTTCACTGAATTCCCCATCAAGTAGACGTCTCTTAGGGGCCC
GCTTGCTTTTACGAACCGTGCCGGCATGGTCTCCTTGTTTACCAGAGGCA
TTCTTTCCAGATGTCTTTCCCATCAAAGAACCCTCCTTCCCAAGTCTAAA
ACCACCTTGGGAGAAATCTTTCCAGGGTACACCTTGCAAACCACTCCTAC
CTGGAGGTGAGTGCCCATCATTGCTACTTCCCTGGAGACTGTTCTTCCTT
GCATAGGACCCAGTCCCTGGCAATCCATTAACTGTTGAGTTTGCATGAAT
TGTGCGCGTAACTCCACCAACCTTGAGCTTAACCTTTTTAACCTTGCTTT
CATTATTATCAATAACAGCTTCTTGTGTTGAACTCTGAATCTCCGCATCT
CTTGACTCTAATTCCGACCACTCTTTCTCCTTGGTACTGCTTTTCCAATT
AGCAGGGGCAAGTACACCCTTGCTAGAACGCTTACTATTTGACCCGCTTC
GCCCGGGCTCATTGTCGTAAAATGCATTGAACCCTCCATCTTGTTTCTTT
CTTTTATGGGATTTGTCACCTTCAAAACCAATGTCAGGAGAAATCCTAGA
AACGTGTTGATTAAGATTAAATTCTTTCCGCTTTGAATTAGCATCGACAC
CGGCATTCTCATCACTGGAGACTTTGCTCACATCATCCGAAGGTGGTGTC
GATGACAATGGAGAGTGATTCTGGCTTTCAGTATAAGACAGCGAATCAGG
ACGAGGCCGACGAGAACTCCTCTTCTTCCTCACAGCATTATTTGCGCCGT
TAAACCGACTACCCGACTCTTCCATGGTGGTAAATAACTTTACCAGAAGG
ATAATCTAGCAAGACCGCTAATCCTTCTTGAGCTAACCGTACAGAAGAAA
CCGAGGAAATCAGGGAAGAGAAAAGAAGAGAGAAGAAGAGGAAAGAGAGA
AGGAGAAGGCGGAAGGTAAAATAGATTAGGTGGGAATGTGAAAAAGAATA
AAAGGATTTTCGTAGAGAAGGGGAAAAGAAAGAAAGGGAAGAGATGGGAA
TGGAAGGGTTAAAAAGAAAAAGAGGTTTTAGGGTTAGAGAAGGATAGGCA
GATGTTGTTATAGTAACAATTATCTGCTGGTTCACCATTATTTTGCTATT
GCCACACCACCCCTGTGTTTTCCTTTTTATCGTTTGGGTGTGGGCTGGAA
CTTGGAAGGGTGGGTTTTGAGATTGATTTTTTTGGATATTTGACTCGGTC
ACTCGACTCGCCGAACCGACTCAGCCCCCTTCCCCTCTCTTTCTCGCGCT
TTTCTTTTTTCTTTCATTCCGTTCGTCCTTCTTCGTTTCTTAGTCTTAAC
GATTTTAATTTTTTTTTTACACGGTTTACGCTGCAAGAGCGTGCGTAGGT
TAAAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006880	INO80B_C
IPR029523	INO80B/Ies2

Vocabulary: **Cellular Component**
Term	Definition
GO:0031011	Ino80 complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription
GO:0006338	chromatin remodeling

Search form

g.barbadense_cottongen_reftransV1_0092930, g.barbadense_cottongen_reftransV1_0092930 (contig) Gossypium barbadense

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