g.barbadense_cottongen_reftransV1_0092928, g.barbadense_cottongen_reftransV1_0092928 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: V4VEQ4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031658mg PE=4 SV=1) HSP 1 Score: 464.537 bits (1194), Expect = 2.582e-154 Identity = 235/421 (55.82%), Postives = 319/421 (75.77%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYAN-NYKEAGLT----ININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 M LDL VAL+P++KVL +T +GL LA+D ++LLG + LN +VFYVF PAL+ +NLA+TITY+SL++LWFMPVNILL+F+IGSALAW+LIKITRTP HLQG+VIGCCSAGN+GNL LIIVP+VCEESN+PFG++S C S +AYASLSMA GAI+IW+YVY +M Y N + +AG I+I SS ++S ++ LE+ R+PLL S D + D+ +Q + T+ + L K Q I +KI+LK +FAPS IA ++GF IGT+SP R++++G APLRV+++S L+G+ + MTL++GANLL GL RS + S+I+GIIA+R + +PLLGI +V AA G +G+D+L+QF+L+LQYA+PPA+AVGT+ QLF+ +SE SVI+LWTY VAAF+LTLW T ++WLL Sbjct: 1 MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESS-TDIFLESSRKPLLHSSDR-HSPDDSQIQAETR---STKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIWLL 416
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: F6I0B4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01850 PE=4 SV=1) HSP 1 Score: 463.766 bits (1192), Expect = 5.882e-154 Identity = 233/418 (55.74%), Postives = 302/418 (72.25%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYS--ESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGF L + AL+P++KVL +TG+GLF+AL+ ++LLGP AR+HLN +VFY+F PALVA+NLA T+T SL T+WFMPVNILLTF+IGSAL W+LIKITR P+HL +++GCCSAGN+GNL II+P++CEES+NPFG SS C ++ AYASLS A GAI +W+YVY IMR A K N +S + S E + C E LLP +D + + ++ PH E + ++ K Q + + M+K N K+VF PS I + GFFIG + PIR+++IG APLRVIE+S LLG+ + TL++GANLL GL SD+ +I+GI+AVR +F+PLLG+ VV AA H GLVG++ LFQFVLMLQYA+PPAM G + QLFQ GQSE SVIMLWTY VA F+LTLWST FMWL+ Sbjct: 1 MGFWSLFVTALMPILKVLVVTGIGLFIALERIDLLGPTARHHLNTLVFYIFYPALVASNLADTVTASSLATMWFMPVNILLTFIIGSALGWILIKITRPPQHLHALILGCCSAGNMGNLFFIIIPAICEESDNPFG-SSDCSTDGDAYASLSSALGAIGVWTYVYMIMRMSATKCKGEINLCNSTTSVRTSREALEISSDCCTEALLPPRDSPRSGNWSDEEELPHDGSEEKSEVPFSEKIKQKVKIFMEKTNFKQVFTPSTIGVIFGFFIGLIPPIRKLIIGDSAPLRVIESSATLLGEAAIPSTTLIMGANLLSGLKGSDVSIVVILGIVAVRYIFLPLLGVVVVKAATHFGLVGSNLLFQFVLMLQYAVPPAMGTGVICQLFQFGQSECSVIMLWTYAVAGFALTLWSTFFMWLV 417
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A067FRQ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014841mg PE=4 SV=1) HSP 1 Score: 463.381 bits (1191), Expect = 6.472e-154 Identity = 235/421 (55.82%), Postives = 318/421 (75.53%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYAN-NYKEAGLT----ININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 M LDL VAL+P++KVL +T +GL LA+D ++LLG + LN +VFYVF PAL+ +NLA+TITY+SL++LWFMPVNILL+F+IGSALAW+LIKITRTP HLQG+VIGCCSAGN+GNL LIIVP+VCEESN+PFG++S C S +AYASLSMA GAI+IW+YVY +M Y N + +AG I+I SS ++S + LE+ R+PLL S D + D+ +Q + T+ + L K Q I +KI+LK +FAPS IA ++GF IGT+SP R++++G APLRV+++S L+G+ + MTL++GANLL GL RS + S+I+GIIA+R + +PLLGI +V AA G +G+D+L+QF+L+LQYA+PPA+AVGT+ QLF+ +SE SVI+LWTY VAAF+LTLW T ++WLL Sbjct: 1 MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMAVGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESS-TNIFLESSRKPLLHSSDR-RSPDDSQIQAETR---STKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIWLL 416
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A059CF35_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01141 PE=4 SV=1) HSP 1 Score: 461.84 bits (1187), Expect = 3.869e-153 Identity = 241/421 (57.24%), Postives = 319/421 (75.77%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKE----AGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQ-PHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MG LDL +VAL+PV+KVL +T VG LA++ VNLLG DA+ H+N +VFY+F P+L+A+ LA TIT SLVTLWFMPVNILLTF+IGSALAW+LIK+TRTP+HLQ +VIGCC+AGNLGNL LII+P+VC E+N+PFG+SSTC + +AYASLSMA GA++IW YVY +MR A E T ++N+ + S ++ T EPLL S+D + D S + + FE + KI L+K Q IT + I++K++FAPS IA ++GF IG SPIR+++IG DAPLRVI N+ +LLG+ + C+TL++GANLL+GL RS + P +IIG+I +R + +PL+GIGVV AA H G+VG+DAL+QF LMLQ+ALPPAM VGT+TQL + G++E S+IMLWTY VA+ SLTLWST FMW++ Sbjct: 1 MGVLDLFVVALMPVLKVLLVTAVGSLLAMERVNLLGRDAKQHVNNLVFYIFSPSLIASKLADTITLSSLVTLWFMPVNILLTFIIGSALAWVLIKLTRTPRHLQSLVIGCCAAGNLGNLLLIILPAVCTETNSPFGDSSTCSTYGEAYASLSMAIGAVYIWCYVYPLMRISAEKRAEETDPKDSTASLNADEVISGGLPEIIT--EPLLASEDSPSPMDCISQEDEICQTRFEGKTKILCLKKIRQHITTITEHIDIKKLFAPSTIAVIIGFIIGVASPIRKLIIGDDAPLRVIYNATDLLGEAAIPCITLIIGANLLRGLKRSTVSPVVIIGVITIRYIALPLIGIGVVKAAHHFGMVGSDALYQFTLMLQFALPPAMNVGTITQLLEAGENECSIIMLWTYAVASLSLTLWSTFFMWIV 419
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A067FRM7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014841mg PE=4 SV=1) HSP 1 Score: 457.218 bits (1175), Expect = 2.049e-151 Identity = 234/421 (55.58%), Postives = 317/421 (75.30%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYAN-NYKEAGLT----ININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 M LDL VAL+P++KVL +T +GL LA+D ++LLG + LN +VFYVF PAL+ +NLA+TITY+SL++LWFMPVNILL+F+IGSALAW+LIKITRTP HLQG+VIGCCSAGN+GNL LIIVP+VCEESN+PFG++S C S +AYASLSM GAI+IW+YVY +M Y N + +AG I+I SS ++S + LE+ R+PLL S D + D+ +Q + T+ + L K Q I +KI+LK +FAPS IA ++GF IGT+SP R++++G APLRV+++S L+G+ + MTL++GANLL GL RS + S+I+GIIA+R + +PLLGI +V AA G +G+D+L+QF+L+LQYA+PPA+AVGT+ QLF+ +SE SVI+LWTY VAAF+LTLW T ++WLL Sbjct: 1 MEILDLFEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM-VGAIYIWTYVYYVMSLYLNKSVSDAGTNKDSRIHIISSGESS-TNIFLESSRKPLLHSSDR-RSPDDSQIQAETR---STKSRFPFLDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYIWLL 415 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092928 ID=g.barbadense_cottongen_reftransV1_0092928; Name=g.barbadense_cottongen_reftransV1_0092928; organism=Gossypium barbadense; type=contig; length=1998bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|