g.barbadense_cottongen_reftransV1_0092928, g.barbadense_cottongen_reftransV1_0092928 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0B0PN92_GOSAR (Transporter protein OS=Gossypium arboreum GN=F383_05649 PE=4 SV=1) HSP 1 Score: 484.182 bits (1245), Expect = 3.044e-162 Identity = 243/417 (58.27%), Postives = 323/417 (77.46%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTD-ALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFL++ +VAL+PV+KV+ +TG+GLF+ALDH+ LLGP+A +HLN IVFYV PA+ A++LA+TIT++S +TLWFMP+NILLTF+ GS LAWLLIKIT+TPKHL+G+VIGCCSAGNLGNLPLI+VP+VCEE+NNPFG+ S C A+ YASLS+A G I IWSYV+G+MR Y N E N S+ + S ++L +LPS ++ +++ P K+SA +K Q + KK++LK+VFAP+A+A +VGF IG VSPIR+++IG APLRVI+++ + G+ + CMTL++GANLL+GL S++ S+IIGIIAVR++ +P LGIGVV AA++ GL+G++ L+QFVLMLQ+A+PPAMAVGTMTQ FQ+GQ E+SVIMLWTYVVAAFSLTLWS FMW+L Sbjct: 1 MGFLNIFIVALMPVLKVILMTGIGLFIALDHIKLLGPEANHHLNNIVFYVLSPAIAASSLAETITFQSFITLWFMPLNILLTFVFGSILAWLLIKITKTPKHLRGIVIGCCSAGNLGNLPLIMVPAVCEEANNPFGDPSVCSLLARPYASLSLAMGGILIWSYVFGMMRLYTNEGTE-----NDTPSETVAVSSTELA-----VLPS------TNAHTISMHPTPFDAKIVKMSAWKKIMQQMKTISKKVDLKKVFAPTAVAAIVGFIIGIVSPIRKLMIGNKAPLRVIDSTAYMFGEAAIPCMTLIMGANLLRGLKGSEVSRSVIIGIIAVRSILLPALGIGVVMAARNWGLIGSENKLYQFVLMLQFAVPPAMAVGTMTQFFQLGQCETSVIMLWTYVVAAFSLTLWSAFFMWIL 401
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: U5FZV4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14860g PE=4 SV=1) HSP 1 Score: 482.641 bits (1241), Expect = 1.554e-161 Identity = 246/416 (59.13%), Postives = 320/416 (76.92%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDL + AL+PV+KVL ITG+GLFLALD ++LLG +AR+++N +VFY+FGPALV + L +TIT++SL TLWFMPVNILLTFMIGS LAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C +N YASLSMA GAI+IW+YVY IMR Y++ E + +++Q S SES + LL S+ +S + P + EK++ + K FQ + KINLK VFAP+ IA + GF IGTVSPIR ++IG APLRVI+ S +LLG+ T+ CMTL+VG+NLL+GL +S + S+I+GI+AVRN+F+PL+GIG+V AA HLG+V +D+L+QF+L+LQYALPPAM VG + QLF+ G+ E SVIMLW+Y ++A SLTLWST +MWLL Sbjct: 1 MGFLDLFVAALMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAE-----DTDTNQPISDSES-----YKALLLSRKNSGSSGCSKEDELPLT--ISGEKLTVMEKIFQSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLGEATIPCMTLIVGSNLLRGLRKSGVSVSVIVGIVAVRNIFLPLIGIGIVKAAHHLGMVESDSLYQFILLLQYALPPAMTVGVIAQLFKAGEGECSVIMLWSYALSALSLTLWSTFYMWLL 404
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A9P935_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 480.33 bits (1235), Expect = 1.189e-160 Identity = 245/416 (58.89%), Postives = 319/416 (76.68%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDL + L+PV+KVL ITG+GLFLALD ++LLG +AR+++N +VFY+FGPALV + L +TIT++SL TLWFMPVNILLTFMIGS LAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C +N YASLSMA GAI+IW+YVY IMR Y++ E + +++Q S SES + LL S+ +S + P + EK++ + K FQ + KINLK VFAP+ IA + GF IGTVSPIR ++IG APLRVI+ S +LLG+ T+ CMTL+VG+NLL+GL +S + S+I+GI+AVRN+F+PL+GIG+V AA HLG+V +D+L+QF+L+LQYALPPAM VG + QLF+ G+ E SVIMLW+Y ++A SLTLWST +MWLL Sbjct: 1 MGFLDLFVAPLMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAE-----DTDTNQPISDSES-----YKALLLSRKNSGSSGCSKEDELPLT--ISGEKLTVMEKIFQSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLGEATIPCMTLIVGSNLLRGLRKSGVSVSVIVGIVAVRNIFLPLIGIGIVKAAHHLGMVESDSLYQFILLLQYALPPAMTVGVIAQLFKAGEGECSVIMLWSYALSALSLTLWSTFYMWLL 404
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0D2QR11_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G306300 PE=4 SV=1) HSP 1 Score: 477.633 bits (1228), Expect = 1.749e-159 Identity = 235/416 (56.49%), Postives = 315/416 (75.72%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDLL+VAL+P++KVL +TGVGLFL ++ +NLLGP+AR++LNKIVFYV P L+ +NLA+TITY+SLVTLWFMP+N+LLTF++GSAL W+L K+T+TP+HLQG+VIGCCS GNLGNL LI+ P +C+ESN+PF + STC ++A+AYASLSMA GAIF W+Y Y ++ SY E +SS ++ SE ++C EPLL D + D V + P N + +K+S K CI KI+L++VF PS +A + G IG VSP R++LI +APLRVI +S L+G + MTL++GANLLKGL RS++ +I+G++AVRN+ +PLLGIGVV A HLG+VG+DAL++FVLM QYA+PPA+ VGTMTQLF+ GQ E+SVI+LW+Y VA+ SLTLWST++M L+ Sbjct: 1 MGFLDLLVVALVPILKVLLVTGVGLFLGIEKINLLGPEARDYLNKIVFYVLSPCLLFSNLAETITYKSLVTLWFMPLNVLLTFLVGSALGWILAKLTKTPRHLQGIVIGCCSTGNLGNLLLIVFPDICDESNSPFSKLSTCSTDAEAYASLSMAVGAIFTWAYAYPLVSSYVIKNTE-------HSSIQS--SEPSPDSCTEPLLSPSDSQISEDNSVVLELPLTNMQDGKKMSFKEKIAGCIKCITSKIDLEKVFVPSTVASIAGLIIGIVSPFRKVLIADNAPLRVINSSAALIGHAAIPSMTLIMGANLLKGLQRSEMSLVVILGVVAVRNICLPLLGIGVVQGAHHLGVVGSDALYRFVLMFQYAVPPAINVGTMTQLFKSGQGETSVILLWSYSVASISLTLWSTLYMSLV 407
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0D2QQV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G306200 PE=4 SV=1) HSP 1 Score: 474.552 bits (1220), Expect = 1.714e-158 Identity = 238/417 (57.07%), Postives = 320/417 (76.74%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTD-ALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFL++ +VAL+PV+KV+ +TG+G F+ALD + LLGP+A +HLN IVFYV PA+ A++LA++IT++S +TLWFMP+NILLTF+ GS LAWLLIKIT+TPKH +G+VIGCCSAGNLGNLPLI+VP+VCEE NNPFG+ S C A+ YASLS+A G I IWSYV+G+MR Y N E N S+ + S ++L +LPS ++ +++ P + K+SA +K Q + + KK++LK+VFAP+A+A +VGF IG VSPIR+++IG APLRVI+++ + G+ + CMTL++GANLL+GL S++ S+IIGIIAVR++ +P LGIGVV AA++ GL+ ++ L+QFVLMLQ+A+PPAMAVGTMTQ FQ+GQ E+SVIMLWTYVVAA SLTLWST FMW+L Sbjct: 1 MGFLNIFIVALMPVLKVILMTGIGFFIALDRIKLLGPEANHHLNNIVFYVLSPAIAASSLAESITFQSFITLWFMPLNILLTFVFGSILAWLLIKITKTPKHFRGIVIGCCSAGNLGNLPLIMVPAVCEEPNNPFGDPSVCSLLARPYASLSLAMGGILIWSYVFGMMRLYTNEGTE-----NETPSETVAVSSTELA-----VLPS------TNAHTISMHPTPSDAKIIKMSAWKKIMQQMKIISKKVDLKKVFAPTAVAAIVGFIIGIVSPIRKLMIGNRAPLRVIDSTAYMFGEAAIPCMTLIMGANLLRGLKGSEVSRSVIIGIIAVRSILLPALGIGVVMAARNWGLIASENKLYQFVLMLQFAVPPAMAVGTMTQFFQLGQCETSVIMLWTYVVAALSLTLWSTFFMWIL 401
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: B9I0L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14860g PE=4 SV=1) HSP 1 Score: 473.011 bits (1216), Expect = 4.856e-158 Identity = 244/416 (58.65%), Postives = 314/416 (75.48%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDL + AL+PV+KVL ITG+GLFLALD ++LLG +AR+++N +VFY+FGPALV + L +TIT++SL TLWFMPVNILLTFMIGS LAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C +N YASLSMA GAI+IW+YVY IMR Y++ E + +++Q SD E+ + LL K+ G+ EKI FQ + KINLK VFAP+ IA + GF IGTVSPIR ++IG APLRVI+ S +LLG+ T+ CMTL+VG+NLL+GL +S + S+I+GI+AVRN+F+PL+GIG+V AA HLG+V +D+L+QF+L+LQYALPPAM VG + QLF+ G+ E SVIMLW+Y ++A SLTLWST +MWLL Sbjct: 1 MGFLDLFVAALMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAE-----DTDTNQP----ISDSESYKALLLSRKN--------------SGSSGFMEKI------FQSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLGEATIPCMTLIVGSNLLRGLRKSGVSVSVIVGIVAVRNIFLPLIGIGIVKAAHHLGMVESDSLYQFILLLQYALPPAMTVGVIAQLFKAGEGECSVIMLWSYALSALSLTLWSTFYMWLL 387
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0B0PY35_GOSAR (SPAC5D6.04: Uncharacterized transporter C5D6.04 OS=Gossypium arboreum GN=F383_07482 PE=4 SV=1) HSP 1 Score: 473.011 bits (1216), Expect = 1.273e-157 Identity = 236/418 (56.46%), Postives = 315/418 (75.36%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGD--PTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDLL+VAL+P++KVL +TGVGLFL ++ +NLLGP+AR++LNKIVFYV P L+ +NLA+TITY+SLVTLWFMPVN+LLTF++GSAL W+L K+T+TP+HLQG+VIGCCS GNLGNL LI+ P +C+ESN+PF + STC ++A+AYASLSMA GAIF W+Y Y ++ SY E +SS ++ SE ++C EPLL + D V + P N + +K+ K +CI KI+L++VF PS IA + G IG VSP R++LI +APLRVI +S L+G + MTL++GANLLKGL RS++ +I+G++AVRN+ +PLLGIGVV AA HLG+VG+DAL++FVLM QYA+PPA+ VGTMTQLF+ GQ E+SVI+LW+Y VA+ SLTLWST++M L+ Sbjct: 1 MGFLDLLVVALVPILKVLLVTGVGLFLGIEKINLLGPEARDYLNKIVFYVLSPCLLLSNLAETITYKSLVTLWFMPVNVLLTFLVGSALGWILAKLTKTPRHLQGIVIGCCSTGNLGNLLLIVFPDICDESNSPFSKLSTCSTDAEAYASLSMAVGAIFTWAYAYPLVSSYVIKNTE-------HSSIQS--SEPSPDSCTEPLLSPSYSQISEDNSVVLELPLTNMQDGKKMPFKEKIVRCIKCITSKIDLEKVFVPSTIASIAGLIIGIVSPFRKVLIADNAPLRVINSSAALIGHVLAAIPSMTLIMGANLLKGLKRSEMSLVVILGVVAVRNICLPLLGIGVVQAAHHLGVVGSDALYRFVLMFQYAVPPAINVGTMTQLFKSGQGETSVILLWSYSVASISLTLWSTLYMSLV 409
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A061FNQ9_THECC (Auxin efflux carrier family protein isoform 1 OS=Theobroma cacao GN=TCM_043510 PE=4 SV=1) HSP 1 Score: 472.241 bits (1214), Expect = 2.221e-157 Identity = 248/417 (59.47%), Postives = 319/417 (76.50%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQ-PHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLD+ +VAL+PV+KVL +T VGL LA++ ++LLGP+ARN+LNKIVFYV P+L+ +NLA TITY S+VTLWFMP+NILLTF+IGSAL +LIK+T+TP+HL+G+VIGCCSAGNLGNL LI+VP+VCE+SN+PFG+SSTC +NA AYASLSMA AI+ WSY Y ++ +YA E T +SS++ SD +C E LLPS + S+E SVQ + P N + K+S + QC+ M KI+LK VFAPS IA ++GF G VSPIR++LI APL VI S +G+ + CMTL++GANLLKGL RS++ +IIG++AVRN+F+PLLGIGV AA H G+ G+D+L+QFVLMLQYA+PPA VG MTQLFQ GQ E+S+IMLWTY VA+ SLTLWST+FM L+ Sbjct: 1 MGFLDMFVVALMPVLKVLLVTAVGLLLAMEKIDLLGPEARNYLNKIVFYVLSPSLLVSNLADTITYNSVVTLWFMPLNILLTFIIGSALGLVLIKVTKTPEHLRGIVIGCCSAGNLGNLLLILVPAVCEQSNSPFGDSSTCSTNAVAYASLSMAVAAIYTWSYSYAVVSAYAIKSPEHKST---HSSEEAPDPSSD--SCTEALLPS-SYSQISEESSVQVELPLTNSGERTKMSFWKNIVQCVKSIMSKIDLKMVFAPSTIAAIIGFIFGIVSPIRKVLIDDSAPLHVIYTSAAFIGEAAIPCMTLIMGANLLKGLKRSEVNLLVIIGVVAVRNIFLPLLGIGVTKAAYHFGMAGSDSLYQFVLMLQYAVPPAFNVGVMTQLFQRGQGETSIIMLWTYAVASISLTLWSTLFMSLV 411
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: B9SRA8_RICCO (Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_0613430 PE=4 SV=1) HSP 1 Score: 468.774 bits (1205), Expect = 2.060e-156 Identity = 257/417 (61.63%), Postives = 321/417 (76.98%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKR-FQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDLL+VAL+PV++VL +TG+GL LALD ++LLGP+AR++LN +VFYVF PALV + L +TIT+ SLV+LWFMPVNILLTF+IGSALAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VCEESN+PFG+S+TC + +AYASLSMA GA++IW+YVY IMR YA+ EA ++ N E+ RE LLPS+D + AS S+ Q LRKR FQ I K++LK VFAPS IA ++GF IG+VS IR+++IG APLRV+++S LLGD T+ MTL+VGANLLKGL RS + +I+GII VR V MP++GIGVV AA H G+VG+D+L+QFVL+LQYALPPAM VG + QLFQ G+SE SVIMLW+Y VA F+LTLWST +MWLL Sbjct: 1 MGFLDLLVVALVPVLEVLIVTGIGLSLALDRIDLLGPNARHNLNNLVFYVFSPALVVSQLGETITFSSLVSLWFMPVNILLTFIIGSALAWVLIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCEESNSPFGDSTTCSTYGEAYASLSMAVGAVYIWTYVYFIMRIYADKSNEA---VDTN------------ESFRESLLPSRD-IPASSSNSLHAQ------------LLRKRTFQRIKNFAGKVDLKMVFAPSTIAAIIGFTIGSVSAIRKLIIGTSAPLRVLDSSAALLGDATIPSMTLIVGANLLKGLKRSGVSMWVIVGIIMVRYVLMPVMGIGVVKAAYHFGMVGSDSLYQFVLLLQYALPPAMTVGIIAQLFQAGESECSVIMLWSYAVAGFALTLWSTFYMWLL 389
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A068TZT7_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_7 OS=Coffea canephora GN=GSCOC_T00036897001 PE=4 SV=1) HSP 1 Score: 466.077 bits (1198), Expect = 6.268e-155 Identity = 233/414 (56.28%), Postives = 310/414 (74.88%), Query Frame = -2 Query: 192 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMW 1433 MGFL L +VAL+PV+K L +T VGLFLAL+ V++LG AR+HLN +VF+VF PALV++NLA+TIT SL+ LWFMPVNILLTF+IGSAL W+L+K+ RTP+HL G+VIGCC+AGNLGNL LII+P+VCEE+++PFG+SSTC +N +AYASLSMA GA+FIW+YVY I+R+Y + G TIN + NS + ++ T +D QP + E EK+ +K Q + + +++NLK +FAPS IA +VG IG SP+R++LIG APLRVI+ S +++GD ++ MTL+VGANLLKGL RS++ IIIG+ VR + MPLLGI VV AA H GLVG+D+L+QFVL+LQYALP AM++GT+TQLF++G+ + SVIMLW Y VAA +LTLWST ++W Sbjct: 1 MGFLALFIVALMPVLKTLIVTAVGLFLALEKVDILGATARHHLNNLVFFVFTPALVSSNLAETITMSSLIKLWFMPVNILLTFLIGSALGWVLVKVLRTPQHLHGLVIGCCAAGNLGNLLLIIIPAVCEENDSPFGDSSTCSTNGEAYASLSMAIGAVFIWTYVYNIVRAYG--IRSTGSTIN----RTNSANGGEIVTESSLEESLLSKDIETDHSHDTPQPIDSIENDEKVPMRKKIKQQLKIWAERMNLKMMFAPSTIATIVGLAIGATSPLRKLLIGDSAPLRVIDTSTSMIGDASIPAMTLIVGANLLKGLQRSEVGLGIIIGVQVVRYIAMPLLGILVVKAAVHFGLVGSDSLYQFVLLLQYALPTAMSMGTITQLFEVGERDCSVIMLWNYAVAALALTLWSTYYLW 408 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092928 ID=g.barbadense_cottongen_reftransV1_0092928; Name=g.barbadense_cottongen_reftransV1_0092928; organism=Gossypium barbadense; type=contig; length=1998bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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