g.barbadense_cottongen_reftransV1_0092928, g.barbadense_cottongen_reftransV1_0092928 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092928
Unique Nameg.barbadense_cottongen_reftransV1_0092928
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1998
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At05chromosomeg.barbadense_cottongen_reftransV1_0092928:1..1998 .
At05:31124694..31130712 -
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0B0PN92_GOSAR (Transporter protein OS=Gossypium arboreum GN=F383_05649 PE=4 SV=1)

HSP 1 Score: 484.182 bits (1245), Expect = 3.044e-162
Identity = 243/417 (58.27%), Postives = 323/417 (77.46%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTD-ALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFL++ +VAL+PV+KV+ +TG+GLF+ALDH+ LLGP+A +HLN IVFYV  PA+ A++LA+TIT++S +TLWFMP+NILLTF+ GS LAWLLIKIT+TPKHL+G+VIGCCSAGNLGNLPLI+VP+VCEE+NNPFG+ S C   A+ YASLS+A G I IWSYV+G+MR Y N   E     N   S+  + S ++L      +LPS      ++ +++   P        K+SA +K  Q +    KK++LK+VFAP+A+A +VGF IG VSPIR+++IG  APLRVI+++  + G+  + CMTL++GANLL+GL  S++  S+IIGIIAVR++ +P LGIGVV AA++ GL+G++  L+QFVLMLQ+A+PPAMAVGTMTQ FQ+GQ E+SVIMLWTYVVAAFSLTLWS  FMW+L
Sbjct:    1 MGFLNIFIVALMPVLKVILMTGIGLFIALDHIKLLGPEANHHLNNIVFYVLSPAIAASSLAETITFQSFITLWFMPLNILLTFVFGSILAWLLIKITKTPKHLRGIVIGCCSAGNLGNLPLIMVPAVCEEANNPFGDPSVCSLLARPYASLSLAMGGILIWSYVFGMMRLYTNEGTE-----NDTPSETVAVSSTELA-----VLPS------TNAHTISMHPTPFDAKIVKMSAWKKIMQQMKTISKKVDLKKVFAPTAVAAIVGFIIGIVSPIRKLMIGNKAPLRVIDSTAYMFGEAAIPCMTLIMGANLLRGLKGSEVSRSVIIGIIAVRSILLPALGIGVVMAARNWGLIGSENKLYQFVLMLQFAVPPAMAVGTMTQFFQLGQCETSVIMLWTYVVAAFSLTLWSAFFMWIL 401          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: U5FZV4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14860g PE=4 SV=1)

HSP 1 Score: 482.641 bits (1241), Expect = 1.554e-161
Identity = 246/416 (59.13%), Postives = 320/416 (76.92%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFLDL + AL+PV+KVL ITG+GLFLALD ++LLG +AR+++N +VFY+FGPALV + L +TIT++SL TLWFMPVNILLTFMIGS LAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C +N   YASLSMA GAI+IW+YVY IMR Y++   E     + +++Q  S SES      + LL S+    +S      + P     + EK++ + K FQ +     KINLK VFAP+ IA + GF IGTVSPIR ++IG  APLRVI+ S +LLG+ T+ CMTL+VG+NLL+GL +S +  S+I+GI+AVRN+F+PL+GIG+V AA HLG+V +D+L+QF+L+LQYALPPAM VG + QLF+ G+ E SVIMLW+Y ++A SLTLWST +MWLL
Sbjct:    1 MGFLDLFVAALMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAE-----DTDTNQPISDSES-----YKALLLSRKNSGSSGCSKEDELPLT--ISGEKLTVMEKIFQSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLGEATIPCMTLIVGSNLLRGLRKSGVSVSVIVGIVAVRNIFLPLIGIGIVKAAHHLGMVESDSLYQFILLLQYALPPAMTVGVIAQLFKAGEGECSVIMLWSYALSALSLTLWSTFYMWLL 404          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A9P935_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 480.33 bits (1235), Expect = 1.189e-160
Identity = 245/416 (58.89%), Postives = 319/416 (76.68%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFLDL +  L+PV+KVL ITG+GLFLALD ++LLG +AR+++N +VFY+FGPALV + L +TIT++SL TLWFMPVNILLTFMIGS LAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C +N   YASLSMA GAI+IW+YVY IMR Y++   E     + +++Q  S SES      + LL S+    +S      + P     + EK++ + K FQ +     KINLK VFAP+ IA + GF IGTVSPIR ++IG  APLRVI+ S +LLG+ T+ CMTL+VG+NLL+GL +S +  S+I+GI+AVRN+F+PL+GIG+V AA HLG+V +D+L+QF+L+LQYALPPAM VG + QLF+ G+ E SVIMLW+Y ++A SLTLWST +MWLL
Sbjct:    1 MGFLDLFVAPLMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAE-----DTDTNQPISDSES-----YKALLLSRKNSGSSGCSKEDELPLT--ISGEKLTVMEKIFQSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLGEATIPCMTLIVGSNLLRGLRKSGVSVSVIVGIVAVRNIFLPLIGIGIVKAAHHLGMVESDSLYQFILLLQYALPPAMTVGVIAQLFKAGEGECSVIMLWSYALSALSLTLWSTFYMWLL 404          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0D2QR11_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G306300 PE=4 SV=1)

HSP 1 Score: 477.633 bits (1228), Expect = 1.749e-159
Identity = 235/416 (56.49%), Postives = 315/416 (75.72%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFLDLL+VAL+P++KVL +TGVGLFL ++ +NLLGP+AR++LNKIVFYV  P L+ +NLA+TITY+SLVTLWFMP+N+LLTF++GSAL W+L K+T+TP+HLQG+VIGCCS GNLGNL LI+ P +C+ESN+PF + STC ++A+AYASLSMA GAIF W+Y Y ++ SY     E       +SS ++  SE   ++C EPLL   D   + D   V + P  N +  +K+S   K   CI     KI+L++VF PS +A + G  IG VSP R++LI  +APLRVI +S  L+G   +  MTL++GANLLKGL RS++   +I+G++AVRN+ +PLLGIGVV  A HLG+VG+DAL++FVLM QYA+PPA+ VGTMTQLF+ GQ E+SVI+LW+Y VA+ SLTLWST++M L+
Sbjct:    1 MGFLDLLVVALVPILKVLLVTGVGLFLGIEKINLLGPEARDYLNKIVFYVLSPCLLFSNLAETITYKSLVTLWFMPLNVLLTFLVGSALGWILAKLTKTPRHLQGIVIGCCSTGNLGNLLLIVFPDICDESNSPFSKLSTCSTDAEAYASLSMAVGAIFTWAYAYPLVSSYVIKNTE-------HSSIQS--SEPSPDSCTEPLLSPSDSQISEDNSVVLELPLTNMQDGKKMSFKEKIAGCIKCITSKIDLEKVFVPSTVASIAGLIIGIVSPFRKVLIADNAPLRVINSSAALIGHAAIPSMTLIMGANLLKGLQRSEMSLVVILGVVAVRNICLPLLGIGVVQGAHHLGVVGSDALYRFVLMFQYAVPPAINVGTMTQLFKSGQGETSVILLWSYSVASISLTLWSTLYMSLV 407          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0D2QQV4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G306200 PE=4 SV=1)

HSP 1 Score: 474.552 bits (1220), Expect = 1.714e-158
Identity = 238/417 (57.07%), Postives = 320/417 (76.74%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTD-ALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFL++ +VAL+PV+KV+ +TG+G F+ALD + LLGP+A +HLN IVFYV  PA+ A++LA++IT++S +TLWFMP+NILLTF+ GS LAWLLIKIT+TPKH +G+VIGCCSAGNLGNLPLI+VP+VCEE NNPFG+ S C   A+ YASLS+A G I IWSYV+G+MR Y N   E     N   S+  + S ++L      +LPS      ++ +++   P  +     K+SA +K  Q + +  KK++LK+VFAP+A+A +VGF IG VSPIR+++IG  APLRVI+++  + G+  + CMTL++GANLL+GL  S++  S+IIGIIAVR++ +P LGIGVV AA++ GL+ ++  L+QFVLMLQ+A+PPAMAVGTMTQ FQ+GQ E+SVIMLWTYVVAA SLTLWST FMW+L
Sbjct:    1 MGFLNIFIVALMPVLKVILMTGIGFFIALDRIKLLGPEANHHLNNIVFYVLSPAIAASSLAESITFQSFITLWFMPLNILLTFVFGSILAWLLIKITKTPKHFRGIVIGCCSAGNLGNLPLIMVPAVCEEPNNPFGDPSVCSLLARPYASLSLAMGGILIWSYVFGMMRLYTNEGTE-----NETPSETVAVSSTELA-----VLPS------TNAHTISMHPTPSDAKIIKMSAWKKIMQQMKIISKKVDLKKVFAPTAVAAIVGFIIGIVSPIRKLMIGNRAPLRVIDSTAYMFGEAAIPCMTLIMGANLLRGLKGSEVSRSVIIGIIAVRSILLPALGIGVVMAARNWGLIASENKLYQFVLMLQFAVPPAMAVGTMTQFFQLGQCETSVIMLWTYVVAALSLTLWSTFFMWIL 401          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: B9I0L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s14860g PE=4 SV=1)

HSP 1 Score: 473.011 bits (1216), Expect = 4.856e-158
Identity = 244/416 (58.65%), Postives = 314/416 (75.48%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFLDL + AL+PV+KVL ITG+GLFLALD ++LLG +AR+++N +VFY+FGPALV + L +TIT++SL TLWFMPVNILLTFMIGS LAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C +N   YASLSMA GAI+IW+YVY IMR Y++   E     + +++Q      SD E+ +  LL  K+               G+    EKI      FQ +     KINLK VFAP+ IA + GF IGTVSPIR ++IG  APLRVI+ S +LLG+ T+ CMTL+VG+NLL+GL +S +  S+I+GI+AVRN+F+PL+GIG+V AA HLG+V +D+L+QF+L+LQYALPPAM VG + QLF+ G+ E SVIMLW+Y ++A SLTLWST +MWLL
Sbjct:    1 MGFLDLFVAALMPVLKVLLITGLGLFLALDRIDLLGANARHYMNNLVFYLFGPALVVSQLGETITFQSLNTLWFMPVNILLTFMIGSILAWILIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCMESNSPFGDSTICSTNGTTYASLSMAVGAIYIWTYVYIIMRIYSDKSAE-----DTDTNQP----ISDSESYKALLLSRKN--------------SGSSGFMEKI------FQSVKKFTAKINLKMVFAPATIAAICGFIIGTVSPIRILMIGDSAPLRVIDRSASLLGEATIPCMTLIVGSNLLRGLRKSGVSVSVIVGIVAVRNIFLPLIGIGIVKAAHHLGMVESDSLYQFILLLQYALPPAMTVGVIAQLFKAGEGECSVIMLWSYALSALSLTLWSTFYMWLL 387          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0B0PY35_GOSAR (SPAC5D6.04: Uncharacterized transporter C5D6.04 OS=Gossypium arboreum GN=F383_07482 PE=4 SV=1)

HSP 1 Score: 473.011 bits (1216), Expect = 1.273e-157
Identity = 236/418 (56.46%), Postives = 315/418 (75.36%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGD--PTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFLDLL+VAL+P++KVL +TGVGLFL ++ +NLLGP+AR++LNKIVFYV  P L+ +NLA+TITY+SLVTLWFMPVN+LLTF++GSAL W+L K+T+TP+HLQG+VIGCCS GNLGNL LI+ P +C+ESN+PF + STC ++A+AYASLSMA GAIF W+Y Y ++ SY     E       +SS ++  SE   ++C EPLL       + D   V + P  N +  +K+    K  +CI     KI+L++VF PS IA + G  IG VSP R++LI  +APLRVI +S  L+G     +  MTL++GANLLKGL RS++   +I+G++AVRN+ +PLLGIGVV AA HLG+VG+DAL++FVLM QYA+PPA+ VGTMTQLF+ GQ E+SVI+LW+Y VA+ SLTLWST++M L+
Sbjct:    1 MGFLDLLVVALVPILKVLLVTGVGLFLGIEKINLLGPEARDYLNKIVFYVLSPCLLLSNLAETITYKSLVTLWFMPVNVLLTFLVGSALGWILAKLTKTPRHLQGIVIGCCSTGNLGNLLLIVFPDICDESNSPFSKLSTCSTDAEAYASLSMAVGAIFTWAYAYPLVSSYVIKNTE-------HSSIQS--SEPSPDSCTEPLLSPSYSQISEDNSVVLELPLTNMQDGKKMPFKEKIVRCIKCITSKIDLEKVFVPSTIASIAGLIIGIVSPFRKVLIADNAPLRVINSSAALIGHVLAAIPSMTLIMGANLLKGLKRSEMSLVVILGVVAVRNICLPLLGIGVVQAAHHLGVVGSDALYRFVLMFQYAVPPAINVGTMTQLFKSGQGETSVILLWSYSVASISLTLWSTLYMSLV 409          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A061FNQ9_THECC (Auxin efflux carrier family protein isoform 1 OS=Theobroma cacao GN=TCM_043510 PE=4 SV=1)

HSP 1 Score: 472.241 bits (1214), Expect = 2.221e-157
Identity = 248/417 (59.47%), Postives = 319/417 (76.50%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQ-PHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFLD+ +VAL+PV+KVL +T VGL LA++ ++LLGP+ARN+LNKIVFYV  P+L+ +NLA TITY S+VTLWFMP+NILLTF+IGSAL  +LIK+T+TP+HL+G+VIGCCSAGNLGNL LI+VP+VCE+SN+PFG+SSTC +NA AYASLSMA  AI+ WSY Y ++ +YA    E   T   +SS++     SD  +C E LLPS  +   S+E SVQ + P  N   + K+S  +   QC+   M KI+LK VFAPS IA ++GF  G VSPIR++LI   APL VI  S   +G+  + CMTL++GANLLKGL RS++   +IIG++AVRN+F+PLLGIGV  AA H G+ G+D+L+QFVLMLQYA+PPA  VG MTQLFQ GQ E+S+IMLWTY VA+ SLTLWST+FM L+
Sbjct:    1 MGFLDMFVVALMPVLKVLLVTAVGLLLAMEKIDLLGPEARNYLNKIVFYVLSPSLLVSNLADTITYNSVVTLWFMPLNILLTFIIGSALGLVLIKVTKTPEHLRGIVIGCCSAGNLGNLLLILVPAVCEQSNSPFGDSSTCSTNAVAYASLSMAVAAIYTWSYSYAVVSAYAIKSPEHKST---HSSEEAPDPSSD--SCTEALLPS-SYSQISEESSVQVELPLTNSGERTKMSFWKNIVQCVKSIMSKIDLKMVFAPSTIAAIIGFIFGIVSPIRKVLIDDSAPLHVIYTSAAFIGEAAIPCMTLIMGANLLKGLKRSEVNLLVIIGVVAVRNIFLPLLGIGVTKAAYHFGMAGSDSLYQFVLMLQYAVPPAFNVGVMTQLFQRGQGETSIIMLWTYAVASISLTLWSTLFMSLV 411          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: B9SRA8_RICCO (Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_0613430 PE=4 SV=1)

HSP 1 Score: 468.774 bits (1205), Expect = 2.060e-156
Identity = 257/417 (61.63%), Postives = 321/417 (76.98%), Query Frame = -2
Query:  186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKR-FQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433
            MGFLDLL+VAL+PV++VL +TG+GL LALD ++LLGP+AR++LN +VFYVF PALV + L +TIT+ SLV+LWFMPVNILLTF+IGSALAW+LIKIT+TP HLQG+VIGCCSAGNLGNL LIIVP+VCEESN+PFG+S+TC +  +AYASLSMA GA++IW+YVY IMR YA+   EA   ++ N            E+ RE LLPS+D + AS   S+  Q             LRKR FQ I     K++LK VFAPS IA ++GF IG+VS IR+++IG  APLRV+++S  LLGD T+  MTL+VGANLLKGL RS +   +I+GII VR V MP++GIGVV AA H G+VG+D+L+QFVL+LQYALPPAM VG + QLFQ G+SE SVIMLW+Y VA F+LTLWST +MWLL
Sbjct:    1 MGFLDLLVVALVPVLEVLIVTGIGLSLALDRIDLLGPNARHNLNNLVFYVFSPALVVSQLGETITFSSLVSLWFMPVNILLTFIIGSALAWVLIKITKTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCEESNSPFGDSTTCSTYGEAYASLSMAVGAVYIWTYVYFIMRIYADKSNEA---VDTN------------ESFRESLLPSRD-IPASSSNSLHAQ------------LLRKRTFQRIKNFAGKVDLKMVFAPSTIAAIIGFTIGSVSAIRKLIIGTSAPLRVLDSSAALLGDATIPSMTLIVGANLLKGLKRSGVSMWVIVGIIMVRYVLMPVMGIGVVKAAYHFGMVGSDSLYQFVLLLQYALPPAMTVGIIAQLFQAGESECSVIMLWSYAVAGFALTLWSTFYMWLL 389          
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A068TZT7_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_7 OS=Coffea canephora GN=GSCOC_T00036897001 PE=4 SV=1)

HSP 1 Score: 466.077 bits (1198), Expect = 6.268e-155
Identity = 233/414 (56.28%), Postives = 310/414 (74.88%), Query Frame = -2
Query:  192 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMW 1433
            MGFL L +VAL+PV+K L +T VGLFLAL+ V++LG  AR+HLN +VF+VF PALV++NLA+TIT  SL+ LWFMPVNILLTF+IGSAL W+L+K+ RTP+HL G+VIGCC+AGNLGNL LII+P+VCEE+++PFG+SSTC +N +AYASLSMA GA+FIW+YVY I+R+Y    +  G TIN    + NS +  ++ T              +D      QP  + E  EK+   +K  Q + +  +++NLK +FAPS IA +VG  IG  SP+R++LIG  APLRVI+ S +++GD ++  MTL+VGANLLKGL RS++   IIIG+  VR + MPLLGI VV AA H GLVG+D+L+QFVL+LQYALP AM++GT+TQLF++G+ + SVIMLW Y VAA +LTLWST ++W
Sbjct:    1 MGFLALFIVALMPVLKTLIVTAVGLFLALEKVDILGATARHHLNNLVFFVFTPALVSSNLAETITMSSLIKLWFMPVNILLTFLIGSALGWVLVKVLRTPQHLHGLVIGCCAAGNLGNLLLIIIPAVCEENDSPFGDSSTCSTNGEAYASLSMAIGAVFIWTYVYNIVRAYG--IRSTGSTIN----RTNSANGGEIVTESSLEESLLSKDIETDHSHDTPQPIDSIENDEKVPMRKKIKQQLKIWAERMNLKMMFAPSTIATIVGLAIGATSPLRKLLIGDSAPLRVIDTSTSMIGDASIPAMTLIVGANLLKGLQRSEVGLGIIIGVQVVRYIAMPLLGILVVKAAVHFGLVGSDSLYQFVLLLQYALPTAMSMGTITQLFEVGERDCSVIMLWNYAVAALALTLWSTYYLW 408          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PN92_GOSAR3.044e-16258.27Transporter protein OS=Gossypium arboreum GN=F383_... [more]
U5FZV4_POPTR1.554e-16159.13Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A9P935_POPTR1.189e-16058.89Putative uncharacterized protein OS=Populus tricho... [more]
A0A0D2QR11_GOSRA1.749e-15956.49Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QQV4_GOSRA1.714e-15857.07Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9I0L3_POPTR4.856e-15858.65Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0B0PY35_GOSAR1.273e-15756.46SPAC5D6.04: Uncharacterized transporter C5D6.04 OS... [more]
A0A061FNQ9_THECC2.221e-15759.47Auxin efflux carrier family protein isoform 1 OS=T... [more]
B9SRA8_RICCO2.060e-15661.63Auxin:hydrogen symporter, putative OS=Ricinus comm... [more]
A0A068TZT7_COFCA6.268e-15556.28Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004776Membrane transport proteinPFAMPF03547Mem_transcoord: 31..428
e-value: 1.6E-67
score: 227.4
NoneNo IPR availablePANTHERPTHR31651:SF6SUBFAMILY NOT NAMEDcoord: 22..436
NoneNo IPR availablePANTHERPTHR31651FAMILY NOT NAMEDcoord: 22..436
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..54
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 167..186
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..86
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 368..378
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..125
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 296..314
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 315..333
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 187..274
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 345..367
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 437..437
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 415..436
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 87..91
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 334..344
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 379..403
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 404..414
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..166
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 275..295
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 275..297
NoneNo IPR availableTMHMMTMhelixcoord: 123..145
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 165..187
NoneNo IPR availableTMHMMTMhelixcoord: 412..434
NoneNo IPR availableTMHMMTMhelixcoord: 346..368
NoneNo IPR availableTMHMMTMhelixcoord: 378..400
NoneNo IPR availableTMHMMTMhelixcoord: 312..333
NoneNo IPR availableTMHMMTMhelixcoord: 89..111

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092928 ID=g.barbadense_cottongen_reftransV1_0092928; Name=g.barbadense_cottongen_reftransV1_0092928; organism=Gossypium barbadense; type=contig; length=1998bp
TTTTGATAAATACTCCATTTCAAAATAATAATCGGAATAAATCTACCTAT
AGGAGATGGTAGGAAGAGAGAAGGAATTTGATTTCCATGTCAATGAGATT
CAGTACTTGAGAAAAAGTAAAATATTAAGTTCGTCAATAGAGAAACATGT
ATATGTGAACCAATAATTTCCAAACCAAATCAAAATAAAAGCCACATGAA
AACCGTTGACCAAAGGGTGAGGGAGAATGCTGCTACAACATATGTCCATA
GCATTATTACTGAACTTTCACTTTGACCCATCTGAAATAGTTGTGTCATT
GTGCCTACAGCCATGGCAGGCGGAAGGGCATACTGAAGCATTAGAACAAA
CTGGAACAAGGCGTCTGTTCCAACCAAGCCCAAATGCTGTGCAGCATTAA
CAACACCGATGCCCAAGAGAGGCATGAATACGTTCCTCACAGCTATTATC
CCTATAATGATTGAAGGACGAATATCTGATCTTGTTAAACCTTTTAGAAG
ATTTGCTCCCACCAGCAAGGTCATACATGCAACTGTTGGGTCCCCAAGCA
AATTTATAGAATTCTCGATAACACGAAGAGGAGCATCGGCACCAATTAGG
ATTTGTCGGATTGGTGAGACTGTCCCGATGAAGAATCCAACCATTCCTGC
AATTGCTGATGGTGCAAACACTTCCTTTAGGTTAATCTTCTTCATGGTCA
TAGTTATGCATTGAAATCTCTTCCTCAAAGCTGAAATCTTTTCTTGTGTT
TCAAAATTGCCGTGAGGCTGTTGTTGTACTGAATATTCATCTGAAGCAGC
AACCCAATCCTTTGAGGGTAGTAAAGGTTCTCGGCAAGTTTCCAAATCTG
ATTCCGAGTAGGAATTTTTTTGTGAAGAGTTGATGTTGATGGTTAACCCA
GCTTCTTTGTAGTTGTTTGCGTATGAACGCATAATGCCATACACATATGA
CCATATAAAGATGGCTCCTGTCGCCATAGACAGTGAAGCATAGGCCTGGG
CATTTGAAAAACAAGTGGATGATTCTCCAAATGGATTATTTGATTCCTCA
CAGACTGAAGGAACTATAATGAGTGGCAAATTTCCTAAATTCCCAGCAGA
ACAACAACCAATGACCATGCCTTGGAGGTGTTTAGGAGTTCTAGTGATTT
TTATAAGAAGCCAAGCAAGTGCTGACCCAATCATGAATGTGAGCAAAATA
TTCACCGGCATGAACCACAATGTCACTAAGCTTTCATAGGTTATGGTTTG
AGCCAAGTTCGTTGCCACAAGTGCAGGGCCAAACACATAGAATACAATTT
TGTTCAAATGGTTTCTGGCGTCTGGTCCCAACAGATTGACATGATCTAAA
GCAAGAAACAAGCCAACTCCGGTAATGAAAAGCACTTTTATAACCGGAAT
CAGTGCCACAAGGAGTAGATCAAGGAATCCCATTAGCCTATACTCACACC
TGATCTTCAACTTGATTATTCCACTTGTACATCCAATAAACAATCAATAT
TCAAAGTCCTAAAAGACTTGATTTAACAACTTCCATCTATCGTCAATGCC
ACCAAGTAGATGGAGACCGTAGGTGGCGTCAAGCCCTTAATACTTGGAAC
TATCACTGGCCCCCCTGTTTTTTTTATTAAGTGTTGTTATCATACGAGAA
GCTTCATTTGCATTCTTTAAGCAGCCTCAAGCACGTTAAAATGCCCCAGC
CGCGGCCGCTGCAACTTATCCGACGCTGATGGAGACTGAGATGATAAGTC
CTGCTAAACCGGATGTTCTCCTTCTCTCGTCTTTCGGATCAAAGGAATGG
TTGGGAAAGATCTAAGGTTGGATGGTAATGGGAGGTGGATGGGTTAATAG
AATAGTGGAGGGTTTTGTAATGGAGATGAGGGAGGGTTGTGACAATACTA
GTTATAAAGGGAGATTGGGAGATCTGGCAGAGGAGCTGGTAAGCCTGTGC
TGTCGGGCTATATGGTGGCTAGCCACTAGGAAAGCAGTGTTCTTTTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR004776Mem_transp_PIN-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral to membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport