g.barbadense_cottongen_reftransV1_0092653, g.barbadense_cottongen_reftransV1_0092653 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy Swiss-Prot
Match: TIF8_ARATH (Protein TIFY 8 OS=Arabidopsis thaliana GN=TIFY8 PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.180e-47 Identity = 129/310 (41.61%), Postives = 166/310 (53.55%), Query Frame = 1 Query: 169 QQVKPAAMFHDFLGMK-PSNSSVVLAPKATDARF--XXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLGSERQAG--NHLEGIPYYGPRSEISGPDINNSLAGSKRSFSDSAFMGHESLESLHLMKMLRNGAGGERPRRSNEDEIFLGMKSMRPSSTSVILQPPAGSRLEGNASKWERSVPSAVQYASRGGHFVPFVHQVSSNRFKDTTVGPSVISQAAADEGSRTGIKGPGILSSINASGVPTEKGSSAIVPSGGRPKTGAHNSDPEPLVPPSRQGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALA 1083 Q + +FHDFLG K P+ +S +A D R + + + + +S G G +SSTSDL ER +G NHL+GI +GPRS++SG ++N +G+KRS SDS F E E+LH K+LRNG G S + + QPP G GG +HQ+S++RFKD VGPSVI+Q AADEGSRTG+KGPGILSS +P + PS TG +R+ L S+++QMTIFYGGQAHVFDDVHPNKADVIMALA Sbjct: 20 QTEQDKLLFHDFLGSKNPTLASTSMA----DHRLPPDNKAAKAAMTPSTASASSAGGLGGLSSTSDL-VERHSGGGNHLDGIQLFGPRSDVSGSIMSNRFSGNKRSNSDSHFTTQEHPETLHWSKLLRNGPG-----------------SFSMNVNPLANQPPRG-----------------------GGQISHLLHQLSTSRFKDENVGPSVIAQTAADEGSRTGMKGPGILSSFT---MPNSSKLESFAPS----NTG------------NRKDLASSTKQMTIFYGGQAHVFDDVHPNKADVIMALA 265
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy TrEMBL
Match: V4UHU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008356mg PE=4 SV=1) HSP 1 Score: 404.445 bits (1038), Expect = 6.129e-131 Identity = 242/432 (56.02%), Postives = 300/432 (69.44%), Query Frame = 1 Query: 88 VLKMAEQSKXXXXXXXXXXXXXXHLQHQQVKPAAMFHDFLGMKPSNSS--VVLAPKATDARFXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLGSERQAGNHLEGIPYYGPRSEISGPDINNSLAGSKRSFSDSAFMGHESLESLHLMKMLRNGAGGERPRRSNEDEIFLGMKSMRPSSTSVILQPPAGSRLEGNASKWERSVP----SAVQYASRGGHFVPFVHQVSSNRFKDTTVGPSVISQAAADEGSRTGIKGPGILSSINASGVPTEKGSSAIVPSGGRPKTGAHNSDPEPLVPPSRQGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSAVR-TGENYAPGGEPE--AVGSIAFSRELRGKMAVSGNASQATGSGERIPIQTGVP-QGTIVMARDGRNLEAGTEDKRE 1353 ++ MA+Q+K N+N N T + Q +VKP M +DFLGMKPS VVLAPK PS + +S G GRGPISS+SDL SE+Q GNHLEG+P+YG RS++SGP+I+N LAGSKRS S+S FMGH+ E++HLMK+LRN A GE+ +RS +DE+F M+ +RP+S SV+LQP SR++ N S+WER+ P AVQY RG VPF+HQV +NRF+D GPS+ISQ+AADEGSRTGIKGPGIL+SINA G +EK SSA +P G +PK+G +PE PSRQ LTSA RQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKS VR GEN+ G+ E G+ A +E RG+++V GN S T S +RI TG G ++A+D R+ G E E Sbjct: 5 IMVMAQQNKPNNSNATNITKSSDSQQQLKVKP--MLYDFLGMKPSPDCLPVVLAPKPA-------VSEPSLASVGASSAAGGGRGPISSSSDLASEKQVGNHLEGVPFYGTRSDVSGPEISNRLAGSKRSNSESGFMGHDYPENMHLMKILRNAAEGEQSKRSKDDEMFYRMQQLRPTSASVMLQPSNISRIDANVSRWERTNPVNVGPAVQYPLRGSQLVPFMHQVPTNRFRDANAGPSIISQSAADEGSRTGIKGPGILNSINAIGGLSEKNSSAPLPGGSKPKSGTVILEPESST-PSRQELTSAGRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSTVRPVGENFLASGDLEGRVAGNTASPQEFRGRLSVIGNTSHGTSSNDRISTPTGCKGGGGGIIAKDTRSPNQGAEPSNE 426
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy TrEMBL
Match: V4UN25_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008356mg PE=4 SV=1) HSP 1 Score: 400.208 bits (1027), Expect = 3.071e-129 Identity = 242/433 (55.89%), Postives = 300/433 (69.28%), Query Frame = 1 Query: 88 VLKMAEQSKXXXXXXXXXXXXXXHLQHQQVKPAAMFHDFLGMKPSNSS--VVLAPKATDARFXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLGS-ERQAGNHLEGIPYYGPRSEISGPDINNSLAGSKRSFSDSAFMGHESLESLHLMKMLRNGAGGERPRRSNEDEIFLGMKSMRPSSTSVILQPPAGSRLEGNASKWERSVP----SAVQYASRGGHFVPFVHQVSSNRFKDTTVGPSVISQAAADEGSRTGIKGPGILSSINASGVPTEKGSSAIVPSGGRPKTGAHNSDPEPLVPPSRQGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSAVR-TGENYAPGGEPE--AVGSIAFSRELRGKMAVSGNASQATGSGERIPIQTGVP-QGTIVMARDGRNLEAGTEDKRE 1353 ++ MA+Q+K N+N N T + Q +VKP M +DFLGMKPS VVLAPK PS + +S G GRGPISS+SDL S E+Q GNHLEG+P+YG RS++SGP+I+N LAGSKRS S+S FMGH+ E++HLMK+LRN A GE+ +RS +DE+F M+ +RP+S SV+LQP SR++ N S+WER+ P AVQY RG VPF+HQV +NRF+D GPS+ISQ+AADEGSRTGIKGPGIL+SINA G +EK SSA +P G +PK+G +PE PSRQ LTSA RQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKS VR GEN+ G+ E G+ A +E RG+++V GN S T S +RI TG G ++A+D R+ G E E Sbjct: 5 IMVMAQQNKPNNSNATNITKSSDSQQQLKVKP--MLYDFLGMKPSPDCLPVVLAPKPA-------VSEPSLASVGASSAAGGGRGPISSSSDLASVEKQVGNHLEGVPFYGTRSDVSGPEISNRLAGSKRSNSESGFMGHDYPENMHLMKILRNAAEGEQSKRSKDDEMFYRMQQLRPTSASVMLQPSNISRIDANVSRWERTNPVNVGPAVQYPLRGSQLVPFMHQVPTNRFRDANAGPSIISQSAADEGSRTGIKGPGILNSINAIGGLSEKNSSAPLPGGSKPKSGTVILEPESST-PSRQELTSAGRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSTVRPVGENFLASGDLEGRVAGNTASPQEFRGRLSVIGNTSHGTSSNDRISTPTGCKGGGGGIIAKDTRSPNQGAEPSNE 427
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy TrEMBL
Match: V7AXV6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G097300g PE=4 SV=1) HSP 1 Score: 375.555 bits (963), Expect = 5.183e-120 Identity = 219/411 (53.28%), Postives = 278/411 (67.64%), Query Frame = 1 Query: 175 VKPAAMFHDFLGMKPSNSSVVLAPKATDARFXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLGSERQAGNHLEGIPYYGPRSEISGPDINNSLAGSKRSFSDSAFMGH---------ESLESLHLMKMLRNGAGGERPRRSNEDEIFLGMKSMRPSSTSVILQPPAGSRLEGNASKWERSVPSAV---QYASRGGHFVPFVHQVSSNRFKDTTVGPSVISQAAADEGSRTGIKGPGILSSINASGVPTEKGSSAIVPSGGRPKTGAHNSDPEPLVPPSRQGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSAVRT---GENYAPGGEPEAVGSIAFSRELRGKMAVSGNASQATGSGERIPIQTGVPQGTIVMARDGRN----LEAGTEDKR 1350 V A + HDFLGMKP+ S PK TD R SE S S S++ TSD+ SE+Q GNHLEG+P+YGPRS++SG +I+N L GSKRS SDSAF G +S ++ HLMK+LRN AGG+R RR +EDE+ LGM+SM+ SS I QPP+ S+++ N KWERS+ V Q+ RGG PFVHQ++S++ +DT GPS ISQ+AADEGSRTGIKGPGILSSINA+ + TEK SA++ G RPK G++ E PPS+ LTSASRQMTIFYGGQAHVFDDVHP+KADVIMALAGSNGGSWST +SPKSAV+ G ++ E V + AF +EL GK++++G++S A G G+R+ G QG+I A+D RN + +EDKR Sbjct: 19 VNQALVLHDFLGMKPTTDS----PKTTDVRLSEPSASASSAGGRGPFSA---------TSDIASEKQVGNHLEGVPFYGPRSDLSGTEISNRLVGSKRSNSDSAFTGSSRDAFQMVPDSYQNSHLMKVLRNAAGGDRSRRPSEDEVLLGMQSMKQSSQ--IFQPPSSSKIDAN--KWERSILMNVGPLQHPPRGGQLTPFVHQMASSKIRDTNAGPSFISQSAADEGSRTGIKGPGILSSINAAAMGTEKTPSAVMLGGSRPKAGSNII--ESSTPPSQPALTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAVKMVNDGNLHSGENETGVVNNAAFPQELHGKLSITGSSSHAMGPGDRVTTPAGAHQGSI-FAKDTRNPVQPSDPSSEDKR 409
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy TrEMBL
Match: V7AUS8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G097300g PE=4 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 6.040e-119 Identity = 220/412 (53.40%), Postives = 278/412 (67.48%), Query Frame = 1 Query: 175 VKPAAMFHDFLGMKPSNSSVVLAPKATDARFXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLGSERQAGNHLEGIPYYGPRSEISGPDINNSLAGSKRSFSDSAFMGH---------ESLESLHLMKMLRNGAGGERPRRSNEDEIFLGMKSMRPSSTSVILQPPAGSRLEGNASKWERSVPSAV---QYASRGGHFVPFVHQVSSNRFKDTTVGPSVISQAAADEGSRTGIKGPGILSSINASGVPTEKGSSAIVPSGGRPKTGAHNSDPEPLVPPSRQ-GLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSAVRT---GENYAPGGEPEAVGSIAFSRELRGKMAVSGNASQATGSGERIPIQTGVPQGTIVMARDGRN----LEAGTEDKR 1350 V A + HDFLGMKP+ S PK TD R SE S S S++ TSD+ SE+Q GNHLEG+P+YGPRS++SG +I+N L GSKRS SDSAF G +S ++ HLMK+LRN AGG+R RR +EDE+ LGM+SM+ SS I QPP+ S+++ N KWERS+ V Q+ RGG PFVHQ++S++ +DT GPS ISQ+AADEGSRTGIKGPGILSSINA+ + TEK SA++ G RPK G++ E PPS Q LTSASRQMTIFYGGQAHVFDDVHP+KADVIMALAGSNGGSWST +SPKSAV+ G ++ E V + AF +EL GK++++G++S A G G+R+ G QG+I A+D RN + +EDKR Sbjct: 19 VNQALVLHDFLGMKPTTDS----PKTTDVRLSEPSASASSAGGRGPFSA---------TSDIASEKQVGNHLEGVPFYGPRSDLSGTEISNRLVGSKRSNSDSAFTGSSRDAFQMVPDSYQNSHLMKVLRNAAGGDRSRRPSEDEVLLGMQSMKQSSQ--IFQPPSSSKIDAN--KWERSILMNVGPLQHPPRGGQLTPFVHQMASSKIRDTNAGPSFISQSAADEGSRTGIKGPGILSSINAAAMGTEKTPSAVMLGGSRPKAGSNII--ESSTPPSSQPALTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAVKMVNDGNLHSGENETGVVNNAAFPQELHGKLSITGSSSHAMGPGDRVTTPAGAHQGSI-FAKDTRNPVQPSDPSSEDKR 410
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy TrEMBL
Match: A0A059CQI9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01809 PE=4 SV=1) HSP 1 Score: 369.007 bits (946), Expect = 4.990e-117 Identity = 220/403 (54.59%), Postives = 271/403 (67.25%), Query Frame = 1 Query: 172 QVKPAAMFHDFLGMKPSNSSVVLAPKAT---DARFXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDLGSERQAGNHLEGIPYYGPRSEISGPDINNSLAGSKRSFSDSAF----------MGHESLESLHLMKMLRNGAGGERPRRSNEDEIFLGMKSMRPSSTSVILQPPAGSRLEGNASKWER----SVPSAVQYASRGGHFVPFVHQVSSNRFKDTTVGPSVISQAAADEGSRTGIKGPGILSSINASGVPTEKGSSAIVPSGGRPKTGAHNSDPEPLVPPSRQGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSAVR-TGENYAPGGEPEAVGSIAFSRELRGKMAVSGNASQATGSGERIPIQTGVPQGTIVMARDGRNL 1326 +VKP MFHDFLGMK +S DAR SE + ++ +S GGG G TSDLGSERQ NH EG+PYYGPRS+ +I+ LAGSKRS SDSAF +G +S E+ HLMK+LRNGAGGERPRRS+E+++FLG++ +R SS S+IL P + SR E SKWER ++ AVQ+ RGG +VPFVH NR ++ P V+SQ+AADEGSRTGIKGPGILSS+NA G +EK S ++PSG R KT A ++PE PPSR GLTS SRQMTIFY GQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKS R T E+ GE +A S+A SR+ GK+ +G++S GSG RI +G P+G +++ + L Sbjct: 38 EVKP--MFHDFLGMKKPDSPAAGGGGVRGGGDARLSEVASPAASLSVGASSGGGRGPVST--TSDLGSERQVSNHFEGVPYYGPRSDA---EISRRLAGSKRSTSDSAFVGSTREAMTQLGPDSNENFHLMKILRNGAGGERPRRSHEEDVFLGVQPLRQSSGSLILHPGSSSRNEATVSKWERPMSMNMGPAVQFPPRGGQYVPFVHNAPPNRLREVHPSPPVLSQSAADEGSRTGIKGPGILSSMNA-GTSSEKNLSVMLPSGNRAKTAALMTEPESFNPPSRPGLTSESRQMTIFYCGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKSGTRPTNESNVLTGENKA--SVAISRDFHGKLPATGDSSHGIGSGNRISNPSGGPRGHLIVKDTRKQL 430 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 1
BLAST of g.barbadense_cottongen_reftransV1_0092653 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092653 ID=g.barbadense_cottongen_reftransV1_0092653; Name=g.barbadense_cottongen_reftransV1_0092653; organism=Gossypium barbadense; type=contig; length=1958bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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