g.barbadense_cottongen_reftransV1_0092607, g.barbadense_cottongen_reftransV1_0092607 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092607
Unique Nameg.barbadense_cottongen_reftransV1_0092607
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2730
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.647e-23
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            +NFVGR+LGPRG + K++E  TGC++ +RGKGS++D  KE   RG+  +EHL D LH+L++ +   N V I+L+ A E +++LL P  E  D +KR+QL ELA++
Sbjct:  219 YNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAII 323
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.072e-20
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLR--GRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVG+LLGPRGNSLKR++  TG ++ I GKGS++D  KEE+LR  G   Y HL+D LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ L
Sbjct:   74 FNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYL 178
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.100e-20
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLR--GRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVG+LLGPRGNSLKR++  TG ++ I GKGS++D  KEE+LR  G   Y HL+D LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ L
Sbjct:   74 FNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYL 178
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.298e-20
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLR--GRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVG+LLGPRGNSLKR++  TG ++ I GKGS++D  KEE+LR  G   Y HL+D LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ L
Sbjct:   74 FNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYL 178
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.725e-19
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLR--GRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVG+LLGPRGNS+KR++  TG ++ I GKGS++D  KEE+LR  G   Y HL++ LH+LIE   P      R+  A E I++ L P  +  D I+++QLREL+ L
Sbjct:   74 FNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYL 178
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0B0PD94_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31230 PE=4 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 1.212e-138
Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSP PMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 219.55 bits (558), Expect = 1.212e-138
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VD RLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF E+SPGPSGSVSPFNSSGMKRPKTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDTRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRPKTG 280
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0D2UT88_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G125700 PE=4 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 5.839e-138
Identity = 144/154 (93.51%), Postives = 149/154 (96.75%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGD DRLRHRSP PMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDLDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 219.55 bits (558), Expect = 5.839e-138
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VD RLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF E+SPGPSGSVSPFNSSGMKRPKTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDTRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRPKTG 280
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A061EIY7_THECC (RNA-binding KH domain-containing protein OS=Theobroma cacao GN=TCM_019653 PE=4 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.172e-136
Identity = 139/154 (90.26%), Postives = 148/154 (96.10%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMM+NQGFGDFDR+RHRSP PMASSNL+SNVSGTGLGGWNSL QERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRMRHRSPSPMASSNLISNVSGTGLGGWNSLPQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 221.09 bits (562), Expect = 5.172e-136
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKRPKTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRPKTG 280
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0B0NLG2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_20322 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.686e-135
Identity = 136/154 (88.31%), Postives = 147/154 (95.45%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIR+TP+V+SQYLSELLAEHQKLGPF+QVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNV GTGLG WNSL QERLSGPPG+TMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRSTPEVESQYLSELLAEHQKLGPFLQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVYGTGLGSWNSLPQERLSGPPGVTMDWQGAPASPSSYTVKRILRLEIPVDTYPTFNFVGRLL 154

HSP 2 Score: 224.942 bits (572), Expect = 2.686e-135
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = -1 
Query: 1546 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTGY 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKRPKTGY
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRPKTGY 281
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0D2UYJ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G352600 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.686e-135
Identity = 136/154 (88.31%), Postives = 147/154 (95.45%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIR+TP+V+SQYLSELLAEHQKLGPF+QVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNV GTGLG WNSL QERLSGPPG+TMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRSTPEVESQYLSELLAEHQKLGPFLQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVYGTGLGSWNSLPQERLSGPPGVTMDWQGAPASPSSYTVKRILRLEIPVDTYPTFNFVGRLL 154

HSP 2 Score: 224.942 bits (572), Expect = 2.686e-135
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = -1 
Query: 1546 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTGY 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKRPKTGY
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRPKTGY 281
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A067JPA7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00627 PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 2.439e-133
Identity = 137/154 (88.96%), Postives = 145/154 (94.16%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLY+ NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNV GTGLG WN L QERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYDPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVGGTGLGSWNGLPQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 216.468 bits (550), Expect = 2.439e-133
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VD+RLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFN+SGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDMRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTG 280
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: B9MTT7_POPTR (KH domain-containing family protein OS=Populus trichocarpa GN=POPTR_0006s11210g PE=4 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.898e-133
Identity = 135/154 (87.66%), Postives = 144/154 (93.51%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLP CSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNL+SNV GTGL GWN + QERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPTCSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLLSNVGGTGLSGWNGIPQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 218.009 bits (554), Expect = 6.898e-133
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFN+SGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTG 280
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: B9T0N9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126290 PE=4 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.294e-132
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNVSGTGLG WN L QERLSGPPGMTMDWQ APASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGSWNGLPQERLSGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 211.846 bits (538), Expect = 2.294e-132
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = -1 
Query: 1552 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKT 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+V++RLRQAQEII ELLKPVDESQDFIKRQQLRELAMLNSNF E+SPGPSGSVSPFN+SGMKR KT
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVEMRLRQAQEIIGELLKPVDESQDFIKRQQLRELAMLNSNFREDSPGPSGSVSPFNTSGMKRAKT 279
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: M5WJA4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009701mg PE=4 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 7.698e-132
Identity = 135/154 (87.66%), Postives = 144/154 (93.51%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEI RVSGMM+NQGFGDFDR+RHRSP PMASSNLMSNV+GTGLGGWN L QERL GP GMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMMSNQGFGDFDRMRHRSPSPMASSNLMSNVTGTGLGGWNGLPQERLGGPHGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 214.927 bits (546), Expect = 7.698e-132
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+PLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELA+LNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280
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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: I1N3C0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.166e-131
Identity = 134/154 (87.01%), Postives = 144/154 (93.51%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+ P+VDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEI RVSGM++NQGFGDFDRLRHRSP PMASSNLMSNVSGTGLGGWNSL QERL GPPGMTMDWQ APASPSS+TVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQERLCGPPGMTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 213.772 bits (543), Expect = 4.166e-131
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+PLHILIEA+LPANVVDIRLRQAQEIIEELLKPVDESQD+IKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEAELPANVVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
GLD1_CAEEL2.647e-2347.62Female germline-specific tumor suppressor gld-1 OS... [more]
KHDR2_MOUSE3.072e-2050.47KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_RAT3.100e-2050.47KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_HUMAN3.298e-2050.47KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE1.725e-1948.60KH domain-containing, RNA-binding, signal transduc... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PD94_GOSAR1.212e-13894.16Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2UT88_GOSRA5.839e-13893.51Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EIY7_THECC5.172e-13690.26RNA-binding KH domain-containing protein OS=Theobr... [more]
A0A0B0NLG2_GOSAR2.686e-13588.31Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2UYJ5_GOSRA2.686e-13588.31Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067JPA7_JATCU2.439e-13388.96Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9MTT7_POPTR6.898e-13387.66KH domain-containing family protein OS=Populus tri... [more]
B9T0N9_RICCO2.294e-13289.61Putative uncharacterized protein OS=Ricinus commun... [more]
M5WJA4_PRUPE7.698e-13287.66Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
I1N3C0_SOYBN4.166e-13187.01Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032377STAR protein, homodimerisation regionPFAMPF16544STAR_dimercoord: 23..71
e-value: 4.2E-14
score: 51.7
NoneNo IPR availablePANTHERPTHR11208RNA-BINDING PROTEIN RELATEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR11208:SF59SUBFAMILY NOT NAMEDcoord: 1..145

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092607 ID=g.barbadense_cottongen_reftransV1_0092607; Name=g.barbadense_cottongen_reftransV1_0092607; organism=Gossypium barbadense; type=contig; length=2730bp
CTCTATATTTTTTGAGTTTTTATTTTATTTTCTTTTCTTTCATTTTTCAA
CTCTAACATACAGTCAGTGGATCAGAAGAAATTTATTTTTTCTTTTAATT
TTTCCTACCAAAAAAATTTATTTTACATATTTTTATTTTTCTACCCTTCA
ATTTTTCATCCATCCATTTCTTTTTCCACTCTACTAAGTAAAGCATTCAG
CTATAGATAAAACTTGTATCCAAAATGCTACAGTCCAATTCAAGTAAAAA
TTCAATATCAACATCAATCCTGATACTTTATAGATACAGCCAATTATAAA
AGGATTCAAGTTTCAAGGGCAGGCTTTTAGCATCATTGAATAAACTATCA
CATTGCTAGTTTTCTATTTAGGTTAAATTATTATATTAGTCCCTGTACTT
TACAAAAGTTGTGAATTTATAGTCCCTACACTTTTCAAATTTTAAAATTT
CAGTCACCAAACGATAACTATTAAATTCATTAATTTATGTTTTACTATTT
CCAAAATTTGATGGGACAAACATATTATCATATGTTAACGCACTAAAAAT
CCAGTTAATTGTTTAATGATTGTGATTTATGTTAAGACTAAAATTTTAAA
ATTCGAGAAGAATAGAAACCTAGAATGATCCCAGGGGAGAATATGAACTA
AATCTATAATGGTATGCATAGTACAGACTAGCAATTGAATTTAACTAATC
GGATTTATCTGCAACTTGTACTAAAATTGACCAATTCAAAAAGTAAAAGC
TTAAGAGTACAAAAACTAAATCCACAATTTACATATGGTATAGGGACTAA
TAACATAATTTGACCTATATTTTAACATAGGTAAAAGTGCAAGAGGAAAA
GTAGATAAGATAACCTCCATTGACAAAAGTTCCCAAGGGACAGATCTTTG
AGAATCTTGAATAAATTTACTTCATTGAAGCTATAAAGATACAAATTCCA
TCTGACCACTAAGGGAGGCTTTGAAATGCTTATGCAGGGATAATAACAAT
AATAATAATCTAAATAAAATTTTAACCAACATAAAACGACTGAGAGAGAA
GATGAAGATTCATATGCTAGTATATTGTAGGTCCAACTTAACATTGCTAT
GCTTCTTTCATATAAACTACAAAAGAAAGGAAAGGAGACAAGCAACGGAA
CAACAAATATGACACACCTACAAAACTCAAATCGACCACACCAGGCCTAA
TACTAGCAACATATATATATTCCACACTCCTCAAAGCTCTGCTAACACAA
GAATAAATCCAATGAATGTATTGAGTTTACAGGAAAACTGACCTCACAGA
ACCTAAACTTGAGAGCCATCTATATATTTCTTTTTCTTTGTTCATTTTTG
TTCCTCTTTAGTCCGAAGAGCAAAACAAATTAATAATGAAAAGCCCATCA
GAAAAAGCTCACCAGCAAAAACAGTTAACCTAATATTTTCAAGCTGTGCT
GAATTGATCTGTATCAGAATTCAGAAGGTATACTTTGGCTAAGAAATTCT
GGAGCACGTTGGATCATTTTCAGATGATTTATGGTTAAACTCTCAGTATC
CTGTTTTGGGGCGCTTCATTCCACTGGAATTAAAAGGAGAAACACTACCA
CTTGGACCAGGACTCTCCTCACTGAAATTTGAATTTAGCATTGCCAGTTC
ACGTAGTTGCTGCCTCTTAATAAAATCTTGCGACTCATCCACAGGTTTGA
GTAATTCTTCTATGATTTCCTGCGCCTGTCTAAGCCTTATATCAACAACA
TTAGCAGGTAAATCAGCCTCAATCAAGATGTGGAGAGGATCATTCAGGTG
CTCATATCCAGGCCGACCTCTCAGCTTCTCTTCCTTGTCCGGATCCTTTA
TTGATCCTTTTCCTCTAATGTACACACGGCAGCCAGTAGTAGCTTCCACC
CGCTTTAATGAATTTCCTCTAGGGCCTAGAAGTCGTCCAACAAAATTGAA
CTAACAAGGAAAGACAGACTCTAAACCTCAATACTCACAAAAGAGTTTTC
ATTCAATTGAAATATGAAAAATATAATCAAACAAAACTTAATCTAATGCA
CTAGCATTTTCCATATACAGCTTACGCTTGGATATGTATCAACAGGAATT
TCAAGACGCAAAATCCTCTTCACAGTGTATGAACTAGGGCTTGCTGGGGC
ACCTTGCCAGTCCATTGTCATCCCAGGTGGCCCACTTAGTCTCTCTTGGG
TAAGACTATTCCAGCCGCCCAATCCGGTGCCAGAAACATTTGACATAAGG
TTTGAAGAAGCCATGGGACCGGGGCTTCTATGCCTCAACCGGTCAAAGTC
GCCAAATCCTTGGTTGGCCATCATTCCCGAGACTCGAAATATCTCTTGAT
TTAACAGCCGGCTGCATATAGGAAGGACTTGCATGAAAGGTCCAAGCTTT
TGATGCTCTGCCAACAGTTCTGATAAGTACTGACTGTCAACATCTGGAGT
GGTTCTGATCTGTGGAGAAGCAGCTCTAGCAGGAGAAAAGTTGGAGTTAT
ACAGACCTGACATAGCTTTGCCTTTTGATTTGGGGGATTCAATTCTTTTC
TTTTTTTAAATAAAATGAAAAAATTTTAGTTTTTGAAGAGAAAAAAAATC
AAGTTTGAGCTTCTGGCAGAGAAGAAAGAAGAAAAACACAACACCAAGAG
GGGTGTAATAGGAGGCAACAATATATTTATATATAAAAATGATAAAAAAA
TATTATAAAAAAAAGAAAAAAGAAAAAGAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR032377STAR_dimer