g.barbadense_cottongen_reftransV1_0092607, g.barbadense_cottongen_reftransV1_0092607 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092607
Unique Name	g.barbadense_cottongen_reftransV1_0092607
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2730

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_HUMAN (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.844e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.844e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.844e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.844e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.844e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_RAT (Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.896e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.053e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIA_XENLA (Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.585e-26
Identity = 53/105 (50.48%), Postives = 80/105 (76.19%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +++L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   97 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 201

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.550e-24
Identity = 50/105 (47.62%), Postives = 78/105 (74.29%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            +NFVGR+LGPRG + K++EA TGC++ +RG+ S++D  KEE+ RG+P +EHLN+ LH+LI  +      +I++R+A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 YNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAIL 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.335e-24
Identity = 50/105 (47.62%), Postives = 76/105 (72.38%), Query Frame = -1

Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++E  TGC++ +RGKGS++D  KE+  RG+P +EHL+D LH+LI  +   N   ++L QA   +++LL P  E +D +K++QL ELA++
Sbjct:  151 FNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAII 255

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0B0PD94_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_31230 PE=4 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 1.212e-138
Identity = 145/154 (94.16%), Postives = 150/154 (97.40%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSP PMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 219.55 bits (558), Expect = 1.212e-138
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1

Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VD RLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF E+SPGPSGSVSPFNSSGMKRPKTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDTRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRPKTG 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0D2UT88_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G125700 PE=4 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 5.839e-138
Identity = 144/154 (93.51%), Postives = 149/154 (96.75%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGD DRLRHRSP PMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDLDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 219.55 bits (558), Expect = 5.839e-138
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1

Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VD RLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF E+SPGPSGSVSPFNSSGMKRPKTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDTRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRPKTG 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A061EIY7_THECC (RNA-binding KH domain-containing protein OS=Theobroma cacao GN=TCM_019653 PE=4 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.172e-136
Identity = 139/154 (90.26%), Postives = 148/154 (96.10%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMM+NQGFGDFDR+RHRSP PMASSNL+SNVSGTGLGGWNSL QERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRMRHRSPSPMASSNLISNVSGTGLGGWNSLPQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 221.09 bits (562), Expect = 5.172e-136
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = -1

Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKRPKTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRPKTG 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0B0NLG2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_20322 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.686e-135
Identity = 136/154 (88.31%), Postives = 147/154 (95.45%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIR+TP+V+SQYLSELLAEHQKLGPF+QVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNV GTGLG WNSL QERLSGPPG+TMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRSTPEVESQYLSELLAEHQKLGPFLQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVYGTGLGSWNSLPQERLSGPPGVTMDWQGAPASPSSYTVKRILRLEIPVDTYPTFNFVGRLL 154

HSP 2 Score: 224.942 bits (572), Expect = 2.686e-135
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = -1

Query: 1546 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTGY 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKRPKTGY
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRPKTGY 281

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0D2UYJ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G352600 PE=4 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.686e-135
Identity = 136/154 (88.31%), Postives = 147/154 (95.45%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSPARAASPQIR+TP+V+SQYLSELLAEHQKLGPF+QVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNV GTGLG WNSL QERLSGPPG+TMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPARAASPQIRSTPEVESQYLSELLAEHQKLGPFLQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVYGTGLGSWNSLPQERLSGPPGVTMDWQGAPASPSSYTVKRILRLEIPVDTYPTFNFVGRLL 154

HSP 2 Score: 224.942 bits (572), Expect = 2.686e-135
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = -1

Query: 1546 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTGY 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKRPKTGY
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRPKTGY 281

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A067JPA7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00627 PE=4 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 2.439e-133
Identity = 137/154 (88.96%), Postives = 145/154 (94.16%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLY+ NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNV GTGLG WN L QERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYDPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVGGTGLGSWNGLPQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 216.468 bits (550), Expect = 2.439e-133
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = -1

Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VD+RLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFN+SGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDMRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTG 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: B9MTT7_POPTR (KH domain-containing family protein OS=Populus trichocarpa GN=POPTR_0006s11210g PE=4 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.898e-133
Identity = 135/154 (87.66%), Postives = 144/154 (93.51%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLP CSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNL+SNV GTGL GWN + QERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPTCSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLLSNVGGTGLSGWNGIPQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 218.009 bits (554), Expect = 6.898e-133
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1

Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+VDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNF EESPGPSGSVSPFN+SGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTG 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: B9T0N9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126290 PE=4 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.294e-132
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNVSGTGLG WN L QERLSGPPGMTMDWQ APASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGSWNGLPQERLSGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 211.846 bits (538), Expect = 2.294e-132
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = -1

Query: 1552 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKT 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPAN+V++RLRQAQEII ELLKPVDESQDFIKRQQLRELAMLNSNF E+SPGPSGSVSPFN+SGMKR KT
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVEMRLRQAQEIIGELLKPVDESQDFIKRQQLRELAMLNSNFREDSPGPSGSVSPFNTSGMKRAKT 279

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: M5WJA4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009701mg PE=4 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 7.698e-132
Identity = 135/154 (87.66%), Postives = 144/154 (93.51%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEI RVSGMM+NQGFGDFDR+RHRSP PMASSNLMSNV+GTGLGGWN L QERL GP GMTMDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMMSNQGFGDFDRMRHRSPSPMASSNLMSNVTGTGLGGWNGLPQERLGGPHGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 214.927 bits (546), Expect = 7.698e-132
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = -1

Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+PLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELA+LNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: I1N3C0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.166e-131
Identity = 134/154 (87.01%), Postives = 144/154 (93.51%), Query Frame = -2

Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+ P+VDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEI RVSGM++NQGFGDFDRLRHRSP PMASSNLMSNVSGTGLGGWNSL QERL GPPGMTMDWQ APASPSS+TVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQERLCGPPGMTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 213.772 bits (543), Expect = 4.166e-131
Identity = 129/134 (96.27%), Postives = 132/134 (98.51%), Query Frame = -1

Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+PLHILIEA+LPANVVDIRLRQAQEIIEELLKPVDESQD+IKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEAELPANVVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
QKI_HUMAN	1.844e-26	51.43	Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1	[more]
QKI_HORSE	1.844e-26	51.43	Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1	[more]
QKI_FELCA	1.844e-26	51.43	Protein quaking OS=Felis catus GN=QKI PE=2 SV=1	[more]
QKI_CANFA	1.844e-26	51.43	Protein quaking OS=Canis familiaris GN=QKI PE=2 SV...	[more]
QKI_BOVIN	1.844e-26	51.43	Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1	[more]
QKI_RAT	1.896e-26	51.43	Protein quaking OS=Rattus norvegicus GN=Qki PE=1 S...	[more]
QKI_CHICK	2.053e-26	51.43	Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2	[more]
QKIA_XENLA	2.585e-26	50.48	Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 ...	[more]
QKIA_DANRE	4.550e-24	47.62	Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2	[more]
HOW_DROME	6.335e-24	47.62	Protein held out wings OS=Drosophila melanogaster ...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PD94_GOSAR	1.212e-138	94.16	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2UT88_GOSRA	5.839e-138	93.51	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061EIY7_THECC	5.172e-136	90.26	RNA-binding KH domain-containing protein OS=Theobr...	[more]
A0A0B0NLG2_GOSAR	2.686e-135	88.31	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2UYJ5_GOSRA	2.686e-135	88.31	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067JPA7_JATCU	2.439e-133	88.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9MTT7_POPTR	6.898e-133	87.66	KH domain-containing family protein OS=Populus tri...	[more]
B9T0N9_RICCO	2.294e-132	89.61	Putative uncharacterized protein OS=Ricinus commun...	[more]
M5WJA4_PRUPE	7.698e-132	87.66	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
I1N3C0_SOYBN	4.166e-131	87.01	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032377	STAR protein, homodimerisation region	PFAM	PF16544	STAR_dimer	coord: 23..71 e-value: 4.2E-14 score: 51.7
None	No IPR available	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 1..145
None	No IPR available	PANTHER	PTHR11208:SF59	SUBFAMILY NOT NAMED	coord: 1..145

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092607 ID=g.barbadense_cottongen_reftransV1_0092607; Name=g.barbadense_cottongen_reftransV1_0092607; organism=Gossypium barbadense; type=contig; length=2730bp
CTCTATATTTTTTGAGTTTTTATTTTATTTTCTTTTCTTTCATTTTTCAA
CTCTAACATACAGTCAGTGGATCAGAAGAAATTTATTTTTTCTTTTAATT
TTTCCTACCAAAAAAATTTATTTTACATATTTTTATTTTTCTACCCTTCA
ATTTTTCATCCATCCATTTCTTTTTCCACTCTACTAAGTAAAGCATTCAG
CTATAGATAAAACTTGTATCCAAAATGCTACAGTCCAATTCAAGTAAAAA
TTCAATATCAACATCAATCCTGATACTTTATAGATACAGCCAATTATAAA
AGGATTCAAGTTTCAAGGGCAGGCTTTTAGCATCATTGAATAAACTATCA
CATTGCTAGTTTTCTATTTAGGTTAAATTATTATATTAGTCCCTGTACTT
TACAAAAGTTGTGAATTTATAGTCCCTACACTTTTCAAATTTTAAAATTT
CAGTCACCAAACGATAACTATTAAATTCATTAATTTATGTTTTACTATTT
CCAAAATTTGATGGGACAAACATATTATCATATGTTAACGCACTAAAAAT
CCAGTTAATTGTTTAATGATTGTGATTTATGTTAAGACTAAAATTTTAAA
ATTCGAGAAGAATAGAAACCTAGAATGATCCCAGGGGAGAATATGAACTA
AATCTATAATGGTATGCATAGTACAGACTAGCAATTGAATTTAACTAATC
GGATTTATCTGCAACTTGTACTAAAATTGACCAATTCAAAAAGTAAAAGC
TTAAGAGTACAAAAACTAAATCCACAATTTACATATGGTATAGGGACTAA
TAACATAATTTGACCTATATTTTAACATAGGTAAAAGTGCAAGAGGAAAA
GTAGATAAGATAACCTCCATTGACAAAAGTTCCCAAGGGACAGATCTTTG
AGAATCTTGAATAAATTTACTTCATTGAAGCTATAAAGATACAAATTCCA
TCTGACCACTAAGGGAGGCTTTGAAATGCTTATGCAGGGATAATAACAAT
AATAATAATCTAAATAAAATTTTAACCAACATAAAACGACTGAGAGAGAA
GATGAAGATTCATATGCTAGTATATTGTAGGTCCAACTTAACATTGCTAT
GCTTCTTTCATATAAACTACAAAAGAAAGGAAAGGAGACAAGCAACGGAA
CAACAAATATGACACACCTACAAAACTCAAATCGACCACACCAGGCCTAA
TACTAGCAACATATATATATTCCACACTCCTCAAAGCTCTGCTAACACAA
GAATAAATCCAATGAATGTATTGAGTTTACAGGAAAACTGACCTCACAGA
ACCTAAACTTGAGAGCCATCTATATATTTCTTTTTCTTTGTTCATTTTTG
TTCCTCTTTAGTCCGAAGAGCAAAACAAATTAATAATGAAAAGCCCATCA
GAAAAAGCTCACCAGCAAAAACAGTTAACCTAATATTTTCAAGCTGTGCT
GAATTGATCTGTATCAGAATTCAGAAGGTATACTTTGGCTAAGAAATTCT
GGAGCACGTTGGATCATTTTCAGATGATTTATGGTTAAACTCTCAGTATC
CTGTTTTGGGGCGCTTCATTCCACTGGAATTAAAAGGAGAAACACTACCA
CTTGGACCAGGACTCTCCTCACTGAAATTTGAATTTAGCATTGCCAGTTC
ACGTAGTTGCTGCCTCTTAATAAAATCTTGCGACTCATCCACAGGTTTGA
GTAATTCTTCTATGATTTCCTGCGCCTGTCTAAGCCTTATATCAACAACA
TTAGCAGGTAAATCAGCCTCAATCAAGATGTGGAGAGGATCATTCAGGTG
CTCATATCCAGGCCGACCTCTCAGCTTCTCTTCCTTGTCCGGATCCTTTA
TTGATCCTTTTCCTCTAATGTACACACGGCAGCCAGTAGTAGCTTCCACC
CGCTTTAATGAATTTCCTCTAGGGCCTAGAAGTCGTCCAACAAAATTGAA
CTAACAAGGAAAGACAGACTCTAAACCTCAATACTCACAAAAGAGTTTTC
ATTCAATTGAAATATGAAAAATATAATCAAACAAAACTTAATCTAATGCA
CTAGCATTTTCCATATACAGCTTACGCTTGGATATGTATCAACAGGAATT
TCAAGACGCAAAATCCTCTTCACAGTGTATGAACTAGGGCTTGCTGGGGC
ACCTTGCCAGTCCATTGTCATCCCAGGTGGCCCACTTAGTCTCTCTTGGG
TAAGACTATTCCAGCCGCCCAATCCGGTGCCAGAAACATTTGACATAAGG
TTTGAAGAAGCCATGGGACCGGGGCTTCTATGCCTCAACCGGTCAAAGTC
GCCAAATCCTTGGTTGGCCATCATTCCCGAGACTCGAAATATCTCTTGAT
TTAACAGCCGGCTGCATATAGGAAGGACTTGCATGAAAGGTCCAAGCTTT
TGATGCTCTGCCAACAGTTCTGATAAGTACTGACTGTCAACATCTGGAGT
GGTTCTGATCTGTGGAGAAGCAGCTCTAGCAGGAGAAAAGTTGGAGTTAT
ACAGACCTGACATAGCTTTGCCTTTTGATTTGGGGGATTCAATTCTTTTC
TTTTTTTAAATAAAATGAAAAAATTTTAGTTTTTGAAGAGAAAAAAAATC
AAGTTTGAGCTTCTGGCAGAGAAGAAAGAAGAAAAACACAACACCAAGAG
GGGTGTAATAGGAGGCAACAATATATTTATATATAAAAATGATAAAAAAA
TATTATAAAAAAAAGAAAAAAGAAAAAGAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR032377	STAR_dimer

Search form

g.barbadense_cottongen_reftransV1_0092607, g.barbadense_cottongen_reftransV1_0092607 (contig) Gossypium barbadense

Pages

Pages