g.barbadense_cottongen_reftransV1_0092607, g.barbadense_cottongen_reftransV1_0092607 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092607
Unique Nameg.barbadense_cottongen_reftransV1_0092607
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2730
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 3.322e-124
Identity = 131/157 (83.44%), Postives = 143/157 (91.08%), Query Frame = -2 
Query: 2052 MSGLYN--SNFSPARAASPQIRTTPDVDS-QYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN  S FSPARAASPQIR+TP++DS QYL+ELLAEHQKL PFMQVLPICSRLLNQE+FRVSGMM+NQGFGDFDRLRHRSP PMASSNLMSNVS TGLGGWN L+QERLSG PGMTMDWQGAP SPSSYTVKRILRLEIPVD YP+ + + ++L
Sbjct:    1 MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLL 157

HSP 2 Score: 199.904 bits (507), Expect = 3.322e-124
Identity = 96/105 (91.43%), Postives = 104/105 (99.05%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGRLLGPRGNSLKRVEATTGCRV+IRGKGSIKDP+KE+KLRGRPGYEHLN+ LHILIEADLPA++V+IRLRQAQEIIEELLKPVDESQDFIKRQQLRELA+L
Sbjct:  150 FNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALL 254
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.411e-113
Identity = 122/156 (78.21%), Postives = 138/156 (88.46%), Query Frame = -2 
Query: 2052 MSGLYN-SNFSPARAASPQIRT-TPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN +NFSP+RAASPQIRT + DVDSQY+S+LLAEHQKLGPFMQVLPICSRLLNQEIFR++GMM NQGF DFDRLRHRSP PMAS NLMSNVSG GLGGWN L  ER+ GP GM M+WQGAPASPSSY VKRILRL++PVDTYP+ + + ++L
Sbjct:    1 MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLL 156

HSP 2 Score: 202.216 bits (513), Expect = 1.411e-113
Identity = 117/134 (87.31%), Postives = 128/134 (95.52%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP+KEEKL+G+PGYEHLN+ LHILIEADLP ++VDI+LRQAQEIIEEL+KPVDESQD+IKRQQLRELA+LNSN  E SPGPSGSVSPFNS+ MKRPKTG
Sbjct:  149 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTG 282
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: SPIN1_ORYSJ (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.646e-100
Identity = 104/155 (67.10%), Postives = 123/155 (79.35%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTP-DVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLY+  FSPAR  SPQIR+ P DVDSQYL+ELLAEHQKLGPFMQVLPICS+LL+QEI RVS ++ N GFGDFDR R RSP PM+S N  SN SG G   WN L QERL  P G +MDWQGAP SPSS+ VK+ILRL++PVD+YP+ + + ++L
Sbjct:    1 MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIMRVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQERLGFPQGTSMDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRIL 155

HSP 2 Score: 191.43 bits (485), Expect = 5.646e-100
Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRGNSLKRVEA+TGCRV+IRGKGSIKDP KE+KLRG+PGYEHL+DPLHILIEA+ PA+++D RLR AQE+IEELLKPVDESQDF KRQQLRELAML
Sbjct:  148 FNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAML 252
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.497e-60
Identity = 93/133 (69.92%), Postives = 111/133 (83.46%), Query Frame = -1 
Query: 1552 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKT 1950
            FNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP KEE +RG+PGYEHLN+PLHIL+EA+LP  +VD RL QA+EI+++LL P++E+ D  K+QQLRELA+LN    EE    SGSVSP+NS GMKR KT
Sbjct:  180 FNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

HSP 2 Score: 89.3521 bits (220), Expect = 5.497e-60
Identity = 51/127 (40.16%), Postives = 69/127 (54.33%), Query Frame = -2 
Query: 2052 QYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2432
            +YLSELLAE  KL PF+ VLP   RLLNQEI RV+ ++ N        L H  P P+AS  +  N     + GW S      S P     +W  +P S S    KR +R++IPVD YP+ + + ++L
Sbjct:   64 KYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDH--PSPLASGGIFQNARAD-MNGWASQFPSERSVPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLL 187
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.725e-60
Identity = 76/105 (72.38%), Postives = 94/105 (89.52%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            +NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP KE+ +RG+PGYEHLN+PLHIL+EA+LP  +VD RL QA+EI+++LL PV+E+ DF K+QQLRELA+L
Sbjct:  174 YNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALL 278

HSP 2 Score: 88.1965 bits (217), Expect = 7.725e-60
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = -2 
Query: 2052 QYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2432
            +YLSELLAE  KL PF+ VLP   RL+NQEI RV+ ++ N       + R   P P+AS  +  N S   + GW S      S       +W  +P S S   VKR +R++IPVD YP+ + + ++L
Sbjct:   60 KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLL 181
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660/At1g09670 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.174e-55
Identity = 69/105 (65.71%), Postives = 87/105 (82.86%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            +NFVGR+LGPRGNSLKRVE  T CRV+IRG+GS+KD  KEEKL+G+PGYEHL +PLH+LIEA+LP ++++ RL  A   +E LLKP+DES D  KR+QL+ELA L
Sbjct:  161 YNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAAL 265

HSP 2 Score: 90.5077 bits (223), Expect = 2.174e-55
Identity = 60/151 (39.74%), Postives = 79/151 (52.32%), Query Frame = -2 
Query: 2052 ASPQIRTTPDVDSQ-YLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGT-GLGGWNSLTQER---------LSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2471
            ASP     P  D + YL+ELL E QKLGPF+QV+P C RLLN EI RVS       F D DR  H SP      +L    +G   L GW+ +  E            GP    + W G P  P+   VK+++RL++PVD YPS + + ++L
Sbjct:   30 ASPNRSPCPPSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS------SFPDLDRYEHGSP----FRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGP--SPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRIL 168
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.393e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   97 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 201
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_PIG (Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.844e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Match: QKI_MOUSE (Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.844e-26
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = -1 
Query: 1636 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAML 1950
            FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D  KEE+ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+L
Sbjct:   96 FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: V7ALV8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G059400g PE=4 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.523e-127
Identity = 128/154 (83.12%), Postives = 142/154 (92.21%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSP RAASPQIRT P+VDSQYL+ELLAEHQKLGPFMQ LPIC+RLLNQEI RVSGM++NQGFGDFDRLRHRSP PMASSNLMS+V+G+GLGGWNSL QERL G PGMTMDWQ APASPSS+TVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPVRAASPQIRTNPEVDSQYLTELLAEHQKLGPFMQALPICTRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGSGLGGWNSLQQERLRGTPGMTMDWQVAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 210.69 bits (535), Expect = 2.523e-127
Identity = 126/134 (94.03%), Postives = 132/134 (98.51%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEA+TGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+PLHILIEADLPAN+VDIRLRQAQEIIEELLKPV+ES+D+IKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVEESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: I1MQQ1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.246e-127
Identity = 130/154 (84.42%), Postives = 141/154 (91.56%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSP RAASPQIRT P+VDSQYL+ELLAEHQK GPFMQ LPICSRLLNQEI RVSGM++NQGFGDFDRLRHRSP PMASSNLMS+V+GTGLGGWNSL QERL G PGMTMDWQ APASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPVRAASPQIRTNPEVDSQYLTELLAEHQKFGPFMQALPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGTGLGGWNSLQQERLRGTPGMTMDWQVAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 206.838 bits (525), Expect = 6.246e-127
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEA+TGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+ LHILIEADLPANVVD+RLRQAQEIIEELLKPV+ES+D+IKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEQLHILIEADLPANVVDLRLRQAQEIIEELLKPVEESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: A0A0B2QY45_GLYSO (KH domain-containing protein OS=Glycine soja GN=glysoja_014171 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.246e-127
Identity = 130/154 (84.42%), Postives = 141/154 (91.56%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSP RAASPQIRT P+VDSQYL+ELLAEHQK GPFMQ LPICSRLLNQEI RVSGM++NQGFGDFDRLRHRSP PMASSNLMS+V+GTGLGGWNSL QERL G PGMTMDWQ APASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNSNFSPVRAASPQIRTNPEVDSQYLTELLAEHQKFGPFMQALPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGTGLGGWNSLQQERLRGTPGMTMDWQVAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 154

HSP 2 Score: 206.838 bits (525), Expect = 6.246e-127
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEA+TGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+ LHILIEADLPANVVD+RLRQAQEIIEELLKPV+ES+D+IKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEQLHILIEADLPANVVDLRLRQAQEIIEELLKPVEESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: K4CSP8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g031930.2 PE=4 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 9.467e-127
Identity = 129/155 (83.23%), Postives = 140/155 (90.32%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDS-QYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYN NFSPARAASPQIR+TPDVDS  YLSELLAEHQKLGPFMQVLPICSRLLNQEI RVSGM+ NQGFG+ DRLRHRSP PM S+NLMSNV+G GL GWN L QERLSGPPGM+MDWQGAPASPSSYTVKRILRLEIPVDTYP+ + + ++L
Sbjct:    1 MSGLYNPNFSPARAASPQIRSTPDVDSNHYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLPNQGFGELDRLRHRSPSPMGSANLMSNVTGAGLSGWNGLPQERLSGPPGMSMDWQGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLL 155

HSP 2 Score: 213.001 bits (541), Expect = 9.467e-127
Identity = 127/134 (94.78%), Postives = 133/134 (99.25%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEATTGCRV+IRGKGSIKDPDKEEKLRGRPGYEHLN+PLHILIEADLPA+VVDIRLRQAQEIIEELLKPVDES+D+IKRQQLRELAMLNSNF EESPGPSGSVSPFN+SGMKRPKTG
Sbjct:  148 FNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPASVVDIRLRQAQEIIEELLKPVDESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRPKTG 281
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Match: I1JJZ0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.952e-126
Identity = 129/154 (83.77%), Postives = 140/154 (90.91%), Query Frame = -2 
Query: 2052 MSGLYNSNFSPARAASPQIRTTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEIFRVSGMMANQGFGDFDRLRHRSPGPMASSNLMSNVSGTGLGGWNSLTQERLSGPPGMTMDWQGAPASPSSYTVKRILRLEIPVDTYPSVSCIWKML 2513
            MSGLYNSNFSP RAASPQIRT P+VDSQYL+ELLAEHQKLGPFMQ LPICSRLLNQEI RVSGM++NQGFGDFDRLRHRSP PMASSNLMS+V+GTGLGGWNSL QERL G PGM MDWQ APASPSSYTVKRILRLEIPVD YP+ + + ++L
Sbjct:    1 MSGLYNSNFSPVRAASPQIRTNPEVDSQYLTELLAEHQKLGPFMQALPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGTGLGGWNSLQQERLRGTPGMAMDWQVAPASPSSYTVKRILRLEIPVDAYPNFNFVGRLL 154

HSP 2 Score: 207.223 bits (526), Expect = 1.952e-126
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = -1 
Query: 1549 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLXXXXXXXXXXXXXXXXXXXXXGMKRPKTG 1950
            FNFVGRLLGPRGNSLKRVEA+TGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLN+ LHILIEADLPAN+VDIRLRQAQEIIEELLKPV+ES+D+IKRQQLRELAMLNSNF EESPGPSGSVSPFNSSGMKR KTG
Sbjct:  147 FNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEQLHILIEADLPANIVDIRLRQAQEIIEELLKPVEESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTG 280
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
QKIL3_ARATH3.322e-12483.44KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL4_ARATH1.411e-11378.21KH domain-containing protein At3g08620 OS=Arabidop... [more]
SPIN1_ORYSJ5.646e-10067.10KH domain-containing protein SPIN1 OS=Oryza sativa... [more]
QKIL2_ARATH5.497e-6069.92KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKIL1_ARATH7.725e-6072.38KH domain-containing protein At4g26480 OS=Arabidop... [more]
QKIL5_ARATH2.174e-5565.71KH domain-containing protein At1g09660/At1g09670 O... [more]
QKIB_DANRE1.067e-2651.43Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
QKIB_XENLA1.393e-2651.43Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 ... [more]
QKI_PIG1.844e-2651.43Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1[more]
QKI_MOUSE1.844e-2651.43Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1[more]

Pages

back to top
BLAST of g.barbadense_cottongen_reftransV1_0092607 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7ALV8_PHAVU2.523e-12783.12Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
I1MQQ1_SOYBN6.246e-12784.42Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2QY45_GLYSO6.246e-12784.42KH domain-containing protein OS=Glycine soja GN=gl... [more]
K4CSP8_SOLLC9.467e-12783.23Uncharacterized protein OS=Solanum lycopersicum GN... [more]
I1JJZ0_SOYBN1.952e-12683.77Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032377STAR protein, homodimerisation regionPFAMPF16544STAR_dimercoord: 23..71
e-value: 4.2E-14
score: 51.7
NoneNo IPR availablePANTHERPTHR11208RNA-BINDING PROTEIN RELATEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR11208:SF59SUBFAMILY NOT NAMEDcoord: 1..145

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092607 ID=g.barbadense_cottongen_reftransV1_0092607; Name=g.barbadense_cottongen_reftransV1_0092607; organism=Gossypium barbadense; type=contig; length=2730bp
CTCTATATTTTTTGAGTTTTTATTTTATTTTCTTTTCTTTCATTTTTCAA
CTCTAACATACAGTCAGTGGATCAGAAGAAATTTATTTTTTCTTTTAATT
TTTCCTACCAAAAAAATTTATTTTACATATTTTTATTTTTCTACCCTTCA
ATTTTTCATCCATCCATTTCTTTTTCCACTCTACTAAGTAAAGCATTCAG
CTATAGATAAAACTTGTATCCAAAATGCTACAGTCCAATTCAAGTAAAAA
TTCAATATCAACATCAATCCTGATACTTTATAGATACAGCCAATTATAAA
AGGATTCAAGTTTCAAGGGCAGGCTTTTAGCATCATTGAATAAACTATCA
CATTGCTAGTTTTCTATTTAGGTTAAATTATTATATTAGTCCCTGTACTT
TACAAAAGTTGTGAATTTATAGTCCCTACACTTTTCAAATTTTAAAATTT
CAGTCACCAAACGATAACTATTAAATTCATTAATTTATGTTTTACTATTT
CCAAAATTTGATGGGACAAACATATTATCATATGTTAACGCACTAAAAAT
CCAGTTAATTGTTTAATGATTGTGATTTATGTTAAGACTAAAATTTTAAA
ATTCGAGAAGAATAGAAACCTAGAATGATCCCAGGGGAGAATATGAACTA
AATCTATAATGGTATGCATAGTACAGACTAGCAATTGAATTTAACTAATC
GGATTTATCTGCAACTTGTACTAAAATTGACCAATTCAAAAAGTAAAAGC
TTAAGAGTACAAAAACTAAATCCACAATTTACATATGGTATAGGGACTAA
TAACATAATTTGACCTATATTTTAACATAGGTAAAAGTGCAAGAGGAAAA
GTAGATAAGATAACCTCCATTGACAAAAGTTCCCAAGGGACAGATCTTTG
AGAATCTTGAATAAATTTACTTCATTGAAGCTATAAAGATACAAATTCCA
TCTGACCACTAAGGGAGGCTTTGAAATGCTTATGCAGGGATAATAACAAT
AATAATAATCTAAATAAAATTTTAACCAACATAAAACGACTGAGAGAGAA
GATGAAGATTCATATGCTAGTATATTGTAGGTCCAACTTAACATTGCTAT
GCTTCTTTCATATAAACTACAAAAGAAAGGAAAGGAGACAAGCAACGGAA
CAACAAATATGACACACCTACAAAACTCAAATCGACCACACCAGGCCTAA
TACTAGCAACATATATATATTCCACACTCCTCAAAGCTCTGCTAACACAA
GAATAAATCCAATGAATGTATTGAGTTTACAGGAAAACTGACCTCACAGA
ACCTAAACTTGAGAGCCATCTATATATTTCTTTTTCTTTGTTCATTTTTG
TTCCTCTTTAGTCCGAAGAGCAAAACAAATTAATAATGAAAAGCCCATCA
GAAAAAGCTCACCAGCAAAAACAGTTAACCTAATATTTTCAAGCTGTGCT
GAATTGATCTGTATCAGAATTCAGAAGGTATACTTTGGCTAAGAAATTCT
GGAGCACGTTGGATCATTTTCAGATGATTTATGGTTAAACTCTCAGTATC
CTGTTTTGGGGCGCTTCATTCCACTGGAATTAAAAGGAGAAACACTACCA
CTTGGACCAGGACTCTCCTCACTGAAATTTGAATTTAGCATTGCCAGTTC
ACGTAGTTGCTGCCTCTTAATAAAATCTTGCGACTCATCCACAGGTTTGA
GTAATTCTTCTATGATTTCCTGCGCCTGTCTAAGCCTTATATCAACAACA
TTAGCAGGTAAATCAGCCTCAATCAAGATGTGGAGAGGATCATTCAGGTG
CTCATATCCAGGCCGACCTCTCAGCTTCTCTTCCTTGTCCGGATCCTTTA
TTGATCCTTTTCCTCTAATGTACACACGGCAGCCAGTAGTAGCTTCCACC
CGCTTTAATGAATTTCCTCTAGGGCCTAGAAGTCGTCCAACAAAATTGAA
CTAACAAGGAAAGACAGACTCTAAACCTCAATACTCACAAAAGAGTTTTC
ATTCAATTGAAATATGAAAAATATAATCAAACAAAACTTAATCTAATGCA
CTAGCATTTTCCATATACAGCTTACGCTTGGATATGTATCAACAGGAATT
TCAAGACGCAAAATCCTCTTCACAGTGTATGAACTAGGGCTTGCTGGGGC
ACCTTGCCAGTCCATTGTCATCCCAGGTGGCCCACTTAGTCTCTCTTGGG
TAAGACTATTCCAGCCGCCCAATCCGGTGCCAGAAACATTTGACATAAGG
TTTGAAGAAGCCATGGGACCGGGGCTTCTATGCCTCAACCGGTCAAAGTC
GCCAAATCCTTGGTTGGCCATCATTCCCGAGACTCGAAATATCTCTTGAT
TTAACAGCCGGCTGCATATAGGAAGGACTTGCATGAAAGGTCCAAGCTTT
TGATGCTCTGCCAACAGTTCTGATAAGTACTGACTGTCAACATCTGGAGT
GGTTCTGATCTGTGGAGAAGCAGCTCTAGCAGGAGAAAAGTTGGAGTTAT
ACAGACCTGACATAGCTTTGCCTTTTGATTTGGGGGATTCAATTCTTTTC
TTTTTTTAAATAAAATGAAAAAATTTTAGTTTTTGAAGAGAAAAAAAATC
AAGTTTGAGCTTCTGGCAGAGAAGAAAGAAGAAAAACACAACACCAAGAG
GGGTGTAATAGGAGGCAACAATATATTTATATATAAAAATGATAAAAAAA
TATTATAAAAAAAAGAAAAAAGAAAAAGAA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR032377STAR_dimer