g.barbadense_cottongen_reftransV1_0092533, g.barbadense_cottongen_reftransV1_0092533 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Match: C3H41_ARATH (Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.119e-27 Identity = 103/256 (40.23%), Postives = 147/256 (57.42%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTAS-------VIPAQRKDYFQPI-----------PLNSPKPH----SMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSK--RQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FS++EEAE+AL+APDAVMGNRFIKLW ANRD IPD +++GSG S+ R +TAS + A + ++ I P +S +P + +G V P +KK +TLE++KE LRKKQE+LEQKR ++R++L LEKQ + VK + E AKR K+D A D A + P ++ STE + SP SK +Q S ++ ++N+YKLDNR T +V+ PLP+ A + Sbjct: 480 QFSKREEAESALRAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIAAASKSNHVSSIAKVPTFQTGGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADEPDAKRVKLDTASDSGAAIASPKTESSTDKKVPILKPLSTAKLSTE---TPSPDSKNFKQRPYSFTTSLNAPMVNRYKLDNRTTTIKVVPPLPTGLADV 732 HSP 2 Score: 63.929 bits (154), Expect = 4.560e-9 Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVS-ETLNDC-SAHITYSTCRSAEKAYANSKCWQGHNLQFSWL 1599 V V+KEHFS Y ++ VELED + D ET N+ +A +T+ +AEKA+AN+KCWQ H LQ W+ Sbjct: 732 VAVVKEHFSSYGEVSKVELEDNASIDSGKDHETQNESRAACVTFVKRSAAEKAFANAKCWQEHTLQLVWV 801
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Match: C3H27_ORYSJ (Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica GN=Os04g0394300 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 1.248e-15 Identity = 96/267 (35.96%), Postives = 128/267 (47.94%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQRKDYFQPIPLNSPKPHSMN--------------------------GLMVPPA-------PRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIH---PFVL---NKYKLDNRPTAFRVISPLPSDFA 954 +FS++EEAEAALKAPDAVMGNRFIKLW ANRDRIPD V R IPA+ + + P+P S N G + PA P K + ++ EELRKKQE+L QKR +FRRQL KL KQ G+ +QA K + D + + +S P T ++++ + S S KS S Q V P ++ N++KLDNR T+FR++ PLP + A Sbjct: 501 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDRIPD---------EVEGR------IPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQ-KGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEG--PRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIA 749 HSP 2 Score: 67.0106 bits (162), Expect = 4.212e-10 Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1 Query: 1402 VLKEHFSQYSDLFSVELEDVE--NEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISS 1608 VLK+HF + +L SV LED E N D + +L+ CSA +TY+T +SAEKA+ K +GH L+F WL +S Sbjct: 753 VLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLS-CSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTAS 822
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2Q2H4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G032800 PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.149e-51 Identity = 159/269 (59.11%), Postives = 179/269 (66.54%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDIN----SGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK------------SKRQSC---QSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FSR+EEAEAALKAPDAVMGNRFIKLW ANRD I D +N SGSG+ VT GLTAS +P Q KD Q I L SPK S NG PP +KKLETLE+MKEELRKKQE+LEQKR DFRRQL+KLEKQSS VK D +E AAKR KV A DPAK P SS P ASAA CT +TD +KS EN++S SPK SK+Q C QSAP+ HPF++NKY+LDNRPTAFRVI PLPS FA + Sbjct: 213 QFSRREEAEAALKAPDAVMGNRFIKLWWANRDSITDDGVNSGSGSGSGMPVTPSGLTASGVPPQPVANKEKDNLQRIAQKSNVVEDTDVPSLKSPKSVSTNGPQAPPLLQKKLETLERMKEELRKKQEMLEQKRNDFRRQLNKLEKQSSIVKDDPLSEPAAKRHKVGSAADPAKVLIPSSSEPSASAAKTCTKEMTDKNKSMENVVSRSPKSSTTMALQESMGSKQQYCKPRQSAPMR-HPFLMNKYRLDNRPTAFRVIPPLPSGFADV 480 HSP 2 Score: 187.963 bits (476), Expect = 1.513e-47 Identity = 107/155 (69.03%), Postives = 120/155 (77.42%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDV--MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSS-APKEPLEADDIQTEEKLACSISQE-VASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKG 1848 VDVLKEHF QY DLFSVEL+DVENED + SE L CSA ITYST +SAE+AY N KCWQG+NLQF WLI + +P SKETSS APKEPLEA D+ EEK A S++QE V S +GESENSD +SFVEH LAEVSE SPSPTS +KE SPKG Sbjct: 480 VDVLKEHFLQYGDLFSVELQDVENEDNGDIGSEALKKCSALITYSTRQSAERAYVNGKCWQGNNLQFKWLIYNT---NPSSKETSSSAPKEPLEA-DVTKEEKTAHSVAQEVVGSGNGESENSDRESFVEHMELAEVSEQSPSPTSSMKE-SPKG 629
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2RPL5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G032800 PE=4 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 8.663e-50 Identity = 159/269 (59.11%), Postives = 179/269 (66.54%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDIN----SGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK------------SKRQSC---QSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FSR+EEAEAALKAPDAVMGNRFIKLW ANRD I D +N SGSG+ VT GLTAS +P Q KD Q I L SPK S NG PP +KKLETLE+MKEELRKKQE+LEQKR DFRRQL+KLEKQSS VK D +E AAKR KV A DPAK P SS P ASAA CT +TD +KS EN++S SPK SK+Q C QSAP+ HPF++NKY+LDNRPTAFRVI PLPS FA + Sbjct: 521 QFSRREEAEAALKAPDAVMGNRFIKLWWANRDSITDDGVNSGSGSGSGMPVTPSGLTASGVPPQPVANKEKDNLQRIAQKSNVVEDTDVPSLKSPKSVSTNGPQAPPLLQKKLETLERMKEELRKKQEMLEQKRNDFRRQLNKLEKQSSIVKDDPLSEPAAKRHKVGSAADPAKVLIPSSSEPSASAAKTCTKEMTDKNKSMENVVSRSPKSSTTMALQESMGSKQQYCKPRQSAPMR-HPFLMNKYRLDNRPTAFRVIPPLPSGFADV 788 HSP 2 Score: 187.963 bits (476), Expect = 1.451e-46 Identity = 107/155 (69.03%), Postives = 120/155 (77.42%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDV--MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSS-APKEPLEADDIQTEEKLACSISQE-VASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKG 1848 VDVLKEHF QY DLFSVEL+DVENED + SE L CSA ITYST +SAE+AY N KCWQG+NLQF WLI + +P SKETSS APKEPLEA D+ EEK A S++QE V S +GESENSD +SFVEH LAEVSE SPSPTS +KE SPKG Sbjct: 788 VDVLKEHFLQYGDLFSVELQDVENEDNGDIGSEALKKCSALITYSTRQSAERAYVNGKCWQGNNLQFKWLIYNT---NPSSKETSSSAPKEPLEA-DVTKEEKTAHSVAQEVVGSGNGESENSDRESFVEHMELAEVSEQSPSPTSSMKE-SPKG 937
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: F6HUX2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00790 PE=4 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.969e-46 Identity = 127/266 (47.74%), Postives = 170/266 (63.91%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPA------QRKDYFQPI--------PLNSPKPHS-------MNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSK-----------RQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGC 966 +FS++EEAEAAL+APDAVMGNRFIKLW ANRD +PD I+ G+G SV G+TA+ +P+ + KD Q +++P P S NG PP +KKLE+LE MKEELRKKQE+L+QKR DFRRQL KLEKQ++G+KG+ EQAAKR KV I D AKA+TPR + P + +P T D +KS EN++ +S K+ +QS + +G P +N+YKLDNRP FR+++PLP+ A++G Sbjct: 532 QFSKREEAEAALQAPDAVMGNRFIKLWWANRDSVPDDSISGGNGASVIPHGVTAASVPSHPSAVNRAKDNLQSAAPKVNAVHAIDAPSPTSDHSKPIVTNGPKAPPPLQKKLESLELMKEELRKKQEMLDQKRNDFRRQLDKLEKQATGLKGEVGAEQAAKRPKVGIVGDAAKAATPRCTDPGIAVGSPQTEITMDKNKSAENVVPYSSKTNSAMVLLEPTVLKQSVRPLALGGTPSQMNRYKLDNRPMGFRIMAPLPTGLANVGV 797 HSP 2 Score: 128.257 bits (321), Expect = 3.423e-27 Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDV-MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQE-VASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKGKAC 1857 V VLKEHFS Y DL +VELED+E D S+ +CSA I ++T RSAE+A+ N KCWQGHNL F WLISSNS N+ +E+S + + D+Q K+ACS+S E V S +GE E+S+ KS +EHK SPT +E SPK C Sbjct: 795 VGVLKEHFSSYGDLSTVELEDLEALDGGNGSDASRNCSARIIFTTRRSAERAFVNGKCWQGHNLHFMWLISSNSGNELGGRESSPSASKGSSDADLQPAGKVACSVSLETVLSGNGEPEDSERKSSMEHK--EPDGNFQASPTLLCEEQSPKSNVC 948
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: W9S0N7_9ROSA (Zinc finger CCCH domain-containing protein 41 OS=Morus notabilis GN=L484_020548 PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 5.300e-44 Identity = 133/265 (50.19%), Postives = 167/265 (63.02%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ------RKDYFQPIPLNS-------------PKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKG--DTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK-------SKRQSCQSAPVG-----IHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGC 966 +FS++EEAEAALKAPDAVMGNRFI+L+ ANRD IPD +++S V T G + +P KD Q S P P NG VPP +KKL +LEQ+KEELRKKQE+LEQKR DFRR+L KLEKQ++G+KG DTEQ AKR KV IAVD AKASTPRSS A +P +TD +KS + I+SHSPK S+ + + PV PF++N+YKLDNRPTAFR++ PLP+ F ++ Sbjct: 516 QFSKREEAEAALKAPDAVMGNRFIRLYWANRDSIPDDNVSSSGSVCATPHGPVSVSVPTNSSLANSSKDNLQAAAPKSSTVHTHVASLPDKPSPVVTNGSKVPPL-QKKLGSLEQLKEELRKKQEMLEQKRNDFRRKLDKLEKQATGIKGDSDTEQVAKRPKVGIAVDVAKASTPRSSDSGPIAISPHADTMTDKNKSGDKIVSHSPKTNTTVGLSESMTSKQHPVRPFVAVGSPFLVNRYKLDNRPTAFRILPPLPAGFTNVAV 779 HSP 2 Score: 125.561 bits (314), Expect = 2.652e-26 Identity = 72/148 (48.65%), Postives = 91/148 (61.49%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENED-VMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEVA-SDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE 1833 V V++EHF QY D+ +VELEDVE D SE DCSAH+ + T RSAE+A+ N KCWQGHNL+F WL S NDP E S + + D++ EK A +SQEVA S+ GE+EN + K E E S+ SPSPTS +E Sbjct: 777 VAVVREHFLQYGDISNVELEDVEGYDGSSESEVSKDCSAHVNFVTRRSAERAFINGKCWQGHNLKFMWLTPSTPSNDPSGTENSPSTSKGSSDADVKRGEKPASIVSQEVASSESGEAENEE-KGIGEDMEPGEDSQQSPSPTSGNEE 923
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: B9GH91_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0001s34600g PE=4 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 3.100e-43 Identity = 140/258 (54.26%), Postives = 167/258 (64.73%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQRKDYFQ-------PIP--------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK------------SKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAH 957 +FS++EEAEAAL+APDAVMGNRFI+LW ANRD IPD D S GV TS GL I KD Q +P + PK NG V P +KKLE LEQ+KEELRKKQELL+QKR DFRRQLHKLEKQ++GVKG+ TE A+KRQK IA D AKA+T RS+ P A A+P G+ D +K ENI+S S K SK+ APVG PF++NKYKLDNRPTAF++ISPLP+ A+ Sbjct: 530 QFSKREEAEAALRAPDAVMGNRFIRLWWANRDSIPD-DATS-RGVPATS-GLPHLSIGNSGKDNLQLAISKTTVVPTSDTSMPATDHPKVDITNGPEVSPPMQKKLENLEQLKEELRKKQELLDQKRNDFRRQLHKLEKQATGVKGEVATEPASKRQKTGIASDVAKAATTRSADPGAGVASPHG-GIVDKNKRMENIVSSSTKTSTVMALQESAGSKQSIHPLAPVGP-PFLMNKYKLDNRPTAFKIISPLPAGLAN 782 HSP 2 Score: 90.5077 bits (223), Expect = 1.985e-15 Identity = 58/120 (48.33%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1408 KEHFSQYSDLFSVELED-----VENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEV-ASDDGESEN 1749 +EHFS Y L SVELED + + S+T+ CSA +T++T RSAE+A+ N KCWQG NL+F WL++S S E SSAPK + A D+Q + LA SQEV AS +GE EN Sbjct: 797 REHFSSYGYLSSVELEDEPGDYDGDGNGDGSDTVKSCSARVTFATRRSAERAFLNGKCWQGKNLKFEWLMTSTS----SIGENSSAPKCLVHA-DVQPVKNLARLDSQEVPASGNGEPEN 911
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: B9IJM5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s10830g PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.311e-41 Identity = 135/266 (50.75%), Postives = 172/266 (64.66%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQR------KDYFQ--------------PIP-LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDI-AVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKS-----KRQSCQSAPVGIH-------PFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FS++EEAEAAL+APDAVMGNRFI+LW ANRD IPDG S + VSVT RG+T++ P KD Q P+P ++ K + N VPP P +KLE+LEQ+KEELRKKQELL+QKR DFRRQL KLEKQ++GVKG+ E A+KR K I A D KA+TPRS+ P SA+ M D +K+ EN++S S K+ + S S P IH PF++NKYKLDNRPTAF++ISPLP+ A++ Sbjct: 521 QFSKREEAEAALRAPDAVMGNRFIRLWWANRDSIPDGGAGSSNSVSVTPRGVTSTSFPPHLPIGNSGKDNLQLSVSKATAVPPSVAPVPAIDHSKVITTNVPKVPP-PMQKLESLEQLKEELRKKQELLDQKRNDFRRQLDKLEKQATGVKGEVTAEPASKRHKTGIPASDIVKAATPRSADP-GSASPHAEM--VDKNKTVENVVSSSSKTCVMMALQDSAGSKP-SIHPLAPVGPPFLMNKYKLDNRPTAFKIISPLPAGLANV 781 HSP 2 Score: 117.087 bits (292), Expect = 9.665e-24 Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENE-DVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEV-ASDDGESENSDVKS 1764 V LKE+FS Y DL +VELED ++ D + SETL +CSA +T++T RSAE+A+ N KCWQG NL+F+WL SS S N+P S + S AP ++ D Q+ EKLAC SQE AS +G ENS++ + Sbjct: 781 VATLKEYFSSYGDLSAVELEDEPSDYDGVGSETLKNCSACVTFTTRRSAERAFLNGKCWQGKNLKFAWLTSSTSSNEPGSGQNSFAPNCLVDTD--QSVEKLACLDSQEASASGNGGPENSEINN 903
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: V7C0N2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G007600g PE=4 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 4.899e-41 Identity = 121/256 (47.27%), Postives = 155/256 (60.55%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIP----------------AQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAK-ASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGI-HPFV----LNKYKLDNRPTAFRVISPLPSDFAHIGC 966 +FS++EEAEAALKAPDAVMGNRFIKLW ANRD I N+G+GV VT RG A+ +P A + Y P + PKP +GL VPP +KKL LE +KEELRKKQE+L+QKR +F+RQL+K EKQ+SG+KG+ EQA KR K+ A D AK AS P SS +P D +K N +S SPK+ + P G+ HP +N+YKLDNRP AFR+I P+P+ ++ Sbjct: 521 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIRSDSTNTGNGVIVTPRGQAAAFVPSHPIVTDRGKDIHQIDASKTTYEVSSPTDQPKPAITDGLKVPPPLQKKLVNLENLKEELRKKQEMLDQKRNEFKRQLNKFEKQASGLKGELSNEQATKRLKLGTASDVAKLASPPLSSDADVGITSPNAEAAADKNKQLVNTVSQSPKTSTAARLQEPTGLKHPIQPLMPVNRYKLDNRPAAFRIIPPVPAGLTNVAV 776 HSP 2 Score: 118.242 bits (295), Expect = 4.122e-24 Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETS-SAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVK--E*SPKGKAC 1857 V VLKEHFS Y +L SVELEDV+ D E AHIT++T +AE+A+ N KCW NL+F WL + S N +E S SAPKEPL++DD ++EKL S++QEV DGE++NS+ ++ +E + E SE S T +V E SP+G C Sbjct: 774 VAVLKEHFSPYGELSSVELEDVQVNDSSQQE------AHITFTTRWAAERAFINGKCWNDLNLKFMWLTPTGSSNSTGGRERSLSAPKEPLDSDD-HSKEKLGNSLNQEVIESDGENKNSETRNGLELMEM-EPSEDPQSTTRQVSSPEHSPEGSVC 922
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A059AQP1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01752 PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.496e-40 Identity = 128/275 (46.55%), Postives = 165/275 (60.00%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPA------QRKDYFQPIPL---------------NSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDIAVDPAKASTPRSSGPCA----SAATPCTM----------------GVTDMDKSTENILSHSPKS--KRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FS++EEAEAALKAPDAVMGNRFIKLW ANRD IPD I+S + S+T G TA +P + KD Q PL + KP + NG V P +KKLE+LEQ+KEELRKK+E+L++KR DF+RQL KLEKQ+SGVKG+ EQAAKRQK+ + D AKA TPRSS A S AT M G T + T +++S S + + S P G P++ ++YKLDNRPT F+++ PLP+ FA + Sbjct: 529 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIPDDGISSVNSASLTPHGGTAGSVPTILSIANRTKDNIQSTPLKAIDIPVAESALPSSDQSKPLTPNGSKVTPPLQKKLESLEQLKEELRKKREMLDRKRNDFKRQLDKLEKQASGVKGEVIAEQAAKRQKLGLEADAAKAVTPRSSDVAAVTERSFATADAMASSNDEVVDNENKLVEGATQGSRDTSSLISMEGSSSMNQLNLSSTPAGF-PYI-HRYKLDNRPTTFKILPPLPASFASV 801 HSP 2 Score: 98.2117 bits (243), Expect = 9.175e-18 Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENED-VMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLI--SSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSP 1809 V LKEHFS + DL +ELEDVE +D + SETL SAHI + T SAEKA+A+ KCWQGHNLQF+WL SSN + D + SS EP E ++ QE +G++E S+ + E+ AEVS+ +P Sbjct: 801 VPALKEHFSSFGDLAILELEDVEGQDDINGSETLKTVSAHIGFVTRHSAEKAFAHGKCWQGHNLQFAWLATRSSNDMRD----QRSSPRAEPSTIHSAGKESHISL---QETG--NGDAEYSERQGDDENIDAAEVSQPNP 932
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: K7MVQ1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.455e-38 Identity = 120/255 (47.06%), Postives = 155/255 (60.78%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIP----------------AQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGI-HPFV----LNKYKLDNRPTAFRVISPLPSDFAHIGC 966 +FS++EEAEAALKAPDAVMGNRFIKLW ANRD I SG+GV VT RG + +P A + Y P + KP +G VPP +KKL LE +KEELRKKQE+L+QKR +F+RQL+K EKQ+SG+KG+ TEQAAKR K+ + D AK ++P+SS A+P T D +K N +S SPK+ + G+ HP +N+YKLDNRP AF +I PLPS A++ Sbjct: 520 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIRKDSTTSGNGVIVTPRGQAPAFVPSHPVVTDRGKDIHQADASKTMYEVSSPTDQSKPVITDGPKVPPPLQKKLVNLENLKEELRKKQEMLDQKRNEFKRQLNKFEKQASGLKGEVSTEQAAKRLKMCVPSDVAKLASPQSSDADVGMASPHTEAAADKNKQLVNPVSRSPKASTATRLQESTGLKHPIQPLMPVNRYKLDNRPAAFCIIPPLPSGLANVAV 774 HSP 2 Score: 89.7373 bits (221), Expect = 4.066e-15 Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLI-----SSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQE 1719 V VLKEHFS Y +L +VELEDV+ D E AHIT++T +AE+A+ N KCW HNL+F WL S +S + + SAPKEPL++DD +EE L ++QE Sbjct: 772 VAVLKEHFSPYGELSAVELEDVQVNDSSQQE------AHITFTTRWAAERAFINGKCWNDHNLKFMWLTPTSSSSISSNATASRERSLSAPKEPLDSDD-HSEENLENCVNQE 877
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0B2R5J4_GLYSO (Zinc finger CCCH domain-containing protein 41 OS=Glycine soja GN=glysoja_022168 PE=4 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.613e-38 Identity = 118/255 (46.27%), Postives = 153/255 (60.00%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIP----------------AQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGI-HPFV----LNKYKLDNRPTAFRVISPLPSDFAHIGC 966 +FS++EEAEAALKAPDAVMGNRFIKLW ANRD I SG+GV VT RG + +P A + Y P + KP +G VPP +KKL LE +KEELRKKQE+L+QKR +F+RQL+K EKQ+SG+KG+ TEQA KR K+ + D AK ++P+SS +P T D +K +S SPKS + G+ HP +N+YKLDNRP AFR+I PLP+ A++ Sbjct: 520 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIRKDSTTSGNGVIVTPRGQAPAFVPSHPVVTDRGKDIHQADASKTMYEVSSPTDQSKPVITDGPKVPPPLQKKLVNLESLKEELRKKQEMLDQKRNEFKRQLNKFEKQASGLKGEVSTEQATKRLKMGVTSDVAKLASPQSSDADVGMTSPHTEATADKNKQLVYPVSQSPKSSTATRLQESTGLKHPIQPLMPVNRYKLDNRPAAFRIIPPLPAGLANVAV 774 HSP 2 Score: 106.301 bits (264), Expect = 2.512e-20 Identity = 74/159 (46.54%), Postives = 98/159 (61.64%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWL--ISSNSINDPISKETS-SAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVK--E*SPKGKAC 1857 V VLKEHFS Y +L +VELEDV+ D E AHIT++T +AE+A+ N KCW HNL+F+WL SS+S N S+E S SAPKEPL++DD +EEKL S++QE D E +NS+ + +E E SE S T +V + SP+G C Sbjct: 772 VAVLKEHFSPYGELSAVELEDVQVNDSSQQE------AHITFTTRWAAERAFINGKCWNDHNLKFTWLTPTSSSSSNATGSREPSLSAPKEPLDSDD-HSEEKLDNSVNQESIVSDAEHKNSETNNGLE-LVEREPSEDPQSTTRQVSSPKQSPEGNFC 922 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 2
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092533 ID=g.barbadense_cottongen_reftransV1_0092533; Name=g.barbadense_cottongen_reftransV1_0092533; organism=Gossypium barbadense; type=contig; length=2170bpback to top |