g.barbadense_cottongen_reftransV1_0092533, g.barbadense_cottongen_reftransV1_0092533 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092533
Unique Nameg.barbadense_cottongen_reftransV1_0092533
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2170
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Match: C3H41_ARATH (Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.119e-27
Identity = 103/256 (40.23%), Postives = 147/256 (57.42%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTAS-------VIPAQRKDYFQPI-----------PLNSPKPH----SMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSK--RQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960
            +FS++EEAE+AL+APDAVMGNRFIKLW ANRD IPD  +++GSG S+  R +TAS       +  A + ++   I           P +S +P     + +G  V P  +KK +TLE++KE LRKKQE+LEQKR ++R++L  LEKQ + VK +   E  AKR K+D A D   A     +        P    ++    STE   + SP SK  +Q   S    ++  ++N+YKLDNR T  +V+ PLP+  A +
Sbjct:  480 QFSKREEAESALRAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIAAASKSNHVSSIAKVPTFQTGGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADEPDAKRVKLDTASDSGAAIASPKTESSTDKKVPILKPLSTAKLSTE---TPSPDSKNFKQRPYSFTTSLNAPMVNRYKLDNRTTTIKVVPPLPTGLADV 732          

HSP 2 Score: 63.929 bits (154), Expect = 4.560e-9
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVS-ETLNDC-SAHITYSTCRSAEKAYANSKCWQGHNLQFSWL 1599
            V V+KEHFS Y ++  VELED  + D     ET N+  +A +T+    +AEKA+AN+KCWQ H LQ  W+
Sbjct:  732 VAVVKEHFSSYGEVSKVELEDNASIDSGKDHETQNESRAACVTFVKRSAAEKAFANAKCWQEHTLQLVWV 801          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Match: C3H27_ORYSJ (Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica GN=Os04g0394300 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.248e-15
Identity = 96/267 (35.96%), Postives = 128/267 (47.94%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQRKDYFQPIPLNSPKPHSMN--------------------------GLMVPPA-------PRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIH---PFVL---NKYKLDNRPTAFRVISPLPSDFA 954
            +FS++EEAEAALKAPDAVMGNRFIKLW ANRDRIPD          V  R      IPA+       +  + P+P S N                          G  + PA       P  K +   ++ EELRKKQE+L QKR +FRRQL KL KQ  G+    +QA    K   + D  + +  +S         P     T  ++++  + S S KS   S Q   V      P ++   N++KLDNR T+FR++ PLP + A
Sbjct:  501 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDRIPD---------EVEGR------IPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQ-KGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEG--PRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIA 749          

HSP 2 Score: 67.0106 bits (162), Expect = 4.212e-10
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 1402 VLKEHFSQYSDLFSVELEDVE--NEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISS 1608
            VLK+HF  + +L SV LED E  N D  +  +L+ CSA +TY+T +SAEKA+   K  +GH L+F WL +S
Sbjct:  753 VLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLS-CSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTAS 822          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2Q2H4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G032800 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.149e-51
Identity = 159/269 (59.11%), Postives = 179/269 (66.54%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDIN----SGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK------------SKRQSC---QSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960
            +FSR+EEAEAALKAPDAVMGNRFIKLW ANRD I D  +N    SGSG+ VT  GLTAS +P Q      KD  Q I              L SPK  S NG   PP  +KKLETLE+MKEELRKKQE+LEQKR DFRRQL+KLEKQSS VK D  +E AAKR KV  A DPAK   P SS P ASAA  CT  +TD +KS EN++S SPK            SK+Q C   QSAP+  HPF++NKY+LDNRPTAFRVI PLPS FA +
Sbjct:  213 QFSRREEAEAALKAPDAVMGNRFIKLWWANRDSITDDGVNSGSGSGSGMPVTPSGLTASGVPPQPVANKEKDNLQRIAQKSNVVEDTDVPSLKSPKSVSTNGPQAPPLLQKKLETLERMKEELRKKQEMLEQKRNDFRRQLNKLEKQSSIVKDDPLSEPAAKRHKVGSAADPAKVLIPSSSEPSASAAKTCTKEMTDKNKSMENVVSRSPKSSTTMALQESMGSKQQYCKPRQSAPMR-HPFLMNKYRLDNRPTAFRVIPPLPSGFADV 480          

HSP 2 Score: 187.963 bits (476), Expect = 1.513e-47
Identity = 107/155 (69.03%), Postives = 120/155 (77.42%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDV--MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSS-APKEPLEADDIQTEEKLACSISQE-VASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKG 1848
            VDVLKEHF QY DLFSVEL+DVENED   + SE L  CSA ITYST +SAE+AY N KCWQG+NLQF WLI +    +P SKETSS APKEPLEA D+  EEK A S++QE V S +GESENSD +SFVEH  LAEVSE SPSPTS +KE SPKG
Sbjct:  480 VDVLKEHFLQYGDLFSVELQDVENEDNGDIGSEALKKCSALITYSTRQSAERAYVNGKCWQGNNLQFKWLIYNT---NPSSKETSSSAPKEPLEA-DVTKEEKTAHSVAQEVVGSGNGESENSDRESFVEHMELAEVSEQSPSPTSSMKE-SPKG 629          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2RPL5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G032800 PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.663e-50
Identity = 159/269 (59.11%), Postives = 179/269 (66.54%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDIN----SGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK------------SKRQSC---QSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960
            +FSR+EEAEAALKAPDAVMGNRFIKLW ANRD I D  +N    SGSG+ VT  GLTAS +P Q      KD  Q I              L SPK  S NG   PP  +KKLETLE+MKEELRKKQE+LEQKR DFRRQL+KLEKQSS VK D  +E AAKR KV  A DPAK   P SS P ASAA  CT  +TD +KS EN++S SPK            SK+Q C   QSAP+  HPF++NKY+LDNRPTAFRVI PLPS FA +
Sbjct:  521 QFSRREEAEAALKAPDAVMGNRFIKLWWANRDSITDDGVNSGSGSGSGMPVTPSGLTASGVPPQPVANKEKDNLQRIAQKSNVVEDTDVPSLKSPKSVSTNGPQAPPLLQKKLETLERMKEELRKKQEMLEQKRNDFRRQLNKLEKQSSIVKDDPLSEPAAKRHKVGSAADPAKVLIPSSSEPSASAAKTCTKEMTDKNKSMENVVSRSPKSSTTMALQESMGSKQQYCKPRQSAPMR-HPFLMNKYRLDNRPTAFRVIPPLPSGFADV 788          

HSP 2 Score: 187.963 bits (476), Expect = 1.451e-46
Identity = 107/155 (69.03%), Postives = 120/155 (77.42%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDV--MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSS-APKEPLEADDIQTEEKLACSISQE-VASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKG 1848
            VDVLKEHF QY DLFSVEL+DVENED   + SE L  CSA ITYST +SAE+AY N KCWQG+NLQF WLI +    +P SKETSS APKEPLEA D+  EEK A S++QE V S +GESENSD +SFVEH  LAEVSE SPSPTS +KE SPKG
Sbjct:  788 VDVLKEHFLQYGDLFSVELQDVENEDNGDIGSEALKKCSALITYSTRQSAERAYVNGKCWQGNNLQFKWLIYNT---NPSSKETSSSAPKEPLEA-DVTKEEKTAHSVAQEVVGSGNGESENSDRESFVEHMELAEVSEQSPSPTSSMKE-SPKG 937          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: F6HUX2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00790 PE=4 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.969e-46
Identity = 127/266 (47.74%), Postives = 170/266 (63.91%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPA------QRKDYFQPI--------PLNSPKPHS-------MNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSK-----------RQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGC 966
            +FS++EEAEAAL+APDAVMGNRFIKLW ANRD +PD  I+ G+G SV   G+TA+ +P+      + KD  Q           +++P P S        NG   PP  +KKLE+LE MKEELRKKQE+L+QKR DFRRQL KLEKQ++G+KG+   EQAAKR KV I  D AKA+TPR + P  +  +P T    D +KS EN++ +S K+            +QS +   +G  P  +N+YKLDNRP  FR+++PLP+  A++G 
Sbjct:  532 QFSKREEAEAALQAPDAVMGNRFIKLWWANRDSVPDDSISGGNGASVIPHGVTAASVPSHPSAVNRAKDNLQSAAPKVNAVHAIDAPSPTSDHSKPIVTNGPKAPPPLQKKLESLELMKEELRKKQEMLDQKRNDFRRQLDKLEKQATGLKGEVGAEQAAKRPKVGIVGDAAKAATPRCTDPGIAVGSPQTEITMDKNKSAENVVPYSSKTNSAMVLLEPTVLKQSVRPLALGGTPSQMNRYKLDNRPMGFRIMAPLPTGLANVGV 797          

HSP 2 Score: 128.257 bits (321), Expect = 3.423e-27
Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDV-MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQE-VASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKGKAC 1857
            V VLKEHFS Y DL +VELED+E  D    S+   +CSA I ++T RSAE+A+ N KCWQGHNL F WLISSNS N+   +E+S +  +     D+Q   K+ACS+S E V S +GE E+S+ KS +EHK          SPT   +E SPK   C
Sbjct:  795 VGVLKEHFSSYGDLSTVELEDLEALDGGNGSDASRNCSARIIFTTRRSAERAFVNGKCWQGHNLHFMWLISSNSGNELGGRESSPSASKGSSDADLQPAGKVACSVSLETVLSGNGEPEDSERKSSMEHK--EPDGNFQASPTLLCEEQSPKSNVC 948          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: W9S0N7_9ROSA (Zinc finger CCCH domain-containing protein 41 OS=Morus notabilis GN=L484_020548 PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.300e-44
Identity = 133/265 (50.19%), Postives = 167/265 (63.02%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ------RKDYFQPIPLNS-------------PKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKG--DTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK-------SKRQSCQSAPVG-----IHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGC 966
            +FS++EEAEAALKAPDAVMGNRFI+L+ ANRD IPD +++S   V  T  G  +  +P         KD  Q     S             P P   NG  VPP  +KKL +LEQ+KEELRKKQE+LEQKR DFRR+L KLEKQ++G+KG  DTEQ AKR KV IAVD AKASTPRSS     A +P    +TD +KS + I+SHSPK       S+  + +  PV        PF++N+YKLDNRPTAFR++ PLP+ F ++  
Sbjct:  516 QFSKREEAEAALKAPDAVMGNRFIRLYWANRDSIPDDNVSSSGSVCATPHGPVSVSVPTNSSLANSSKDNLQAAAPKSSTVHTHVASLPDKPSPVVTNGSKVPPL-QKKLGSLEQLKEELRKKQEMLEQKRNDFRRKLDKLEKQATGIKGDSDTEQVAKRPKVGIAVDVAKASTPRSSDSGPIAISPHADTMTDKNKSGDKIVSHSPKTNTTVGLSESMTSKQHPVRPFVAVGSPFLVNRYKLDNRPTAFRILPPLPAGFTNVAV 779          

HSP 2 Score: 125.561 bits (314), Expect = 2.652e-26
Identity = 72/148 (48.65%), Postives = 91/148 (61.49%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENED-VMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEVA-SDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE 1833
            V V++EHF QY D+ +VELEDVE  D    SE   DCSAH+ + T RSAE+A+ N KCWQGHNL+F WL  S   NDP   E S +  +     D++  EK A  +SQEVA S+ GE+EN + K   E     E S+ SPSPTS  +E
Sbjct:  777 VAVVREHFLQYGDISNVELEDVEGYDGSSESEVSKDCSAHVNFVTRRSAERAFINGKCWQGHNLKFMWLTPSTPSNDPSGTENSPSTSKGSSDADVKRGEKPASIVSQEVASSESGEAENEE-KGIGEDMEPGEDSQQSPSPTSGNEE 923          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: B9GH91_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0001s34600g PE=4 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.100e-43
Identity = 140/258 (54.26%), Postives = 167/258 (64.73%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQRKDYFQ-------PIP--------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK------------SKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAH 957
            +FS++EEAEAAL+APDAVMGNRFI+LW ANRD IPD D  S  GV  TS GL    I    KD  Q        +P         + PK    NG  V P  +KKLE LEQ+KEELRKKQELL+QKR DFRRQLHKLEKQ++GVKG+  TE A+KRQK  IA D AKA+T RS+ P A  A+P   G+ D +K  ENI+S S K            SK+     APVG  PF++NKYKLDNRPTAF++ISPLP+  A+
Sbjct:  530 QFSKREEAEAALRAPDAVMGNRFIRLWWANRDSIPD-DATS-RGVPATS-GLPHLSIGNSGKDNLQLAISKTTVVPTSDTSMPATDHPKVDITNGPEVSPPMQKKLENLEQLKEELRKKQELLDQKRNDFRRQLHKLEKQATGVKGEVATEPASKRQKTGIASDVAKAATTRSADPGAGVASPHG-GIVDKNKRMENIVSSSTKTSTVMALQESAGSKQSIHPLAPVGP-PFLMNKYKLDNRPTAFKIISPLPAGLAN 782          

HSP 2 Score: 90.5077 bits (223), Expect = 1.985e-15
Identity = 58/120 (48.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 1408 KEHFSQYSDLFSVELED-----VENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEV-ASDDGESEN 1749
            +EHFS Y  L SVELED       + +   S+T+  CSA +T++T RSAE+A+ N KCWQG NL+F WL++S S       E SSAPK  + A D+Q  + LA   SQEV AS +GE EN
Sbjct:  797 REHFSSYGYLSSVELEDEPGDYDGDGNGDGSDTVKSCSARVTFATRRSAERAFLNGKCWQGKNLKFEWLMTSTS----SIGENSSAPKCLVHA-DVQPVKNLARLDSQEVPASGNGEPEN 911          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: B9IJM5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s10830g PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.311e-41
Identity = 135/266 (50.75%), Postives = 172/266 (64.66%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQR------KDYFQ--------------PIP-LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDI-AVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKS-----KRQSCQSAPVGIH-------PFVLNKYKLDNRPTAFRVISPLPSDFAHI 960
            +FS++EEAEAAL+APDAVMGNRFI+LW ANRD IPDG   S + VSVT RG+T++  P         KD  Q              P+P ++  K  + N   VPP P +KLE+LEQ+KEELRKKQELL+QKR DFRRQL KLEKQ++GVKG+   E A+KR K  I A D  KA+TPRS+ P  SA+    M   D +K+ EN++S S K+      + S  S P  IH       PF++NKYKLDNRPTAF++ISPLP+  A++
Sbjct:  521 QFSKREEAEAALRAPDAVMGNRFIRLWWANRDSIPDGGAGSSNSVSVTPRGVTSTSFPPHLPIGNSGKDNLQLSVSKATAVPPSVAPVPAIDHSKVITTNVPKVPP-PMQKLESLEQLKEELRKKQELLDQKRNDFRRQLDKLEKQATGVKGEVTAEPASKRHKTGIPASDIVKAATPRSADP-GSASPHAEM--VDKNKTVENVVSSSSKTCVMMALQDSAGSKP-SIHPLAPVGPPFLMNKYKLDNRPTAFKIISPLPAGLANV 781          

HSP 2 Score: 117.087 bits (292), Expect = 9.665e-24
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENE-DVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEV-ASDDGESENSDVKS 1764
            V  LKE+FS Y DL +VELED  ++ D + SETL +CSA +T++T RSAE+A+ N KCWQG NL+F+WL SS S N+P S + S AP   ++ D  Q+ EKLAC  SQE  AS +G  ENS++ +
Sbjct:  781 VATLKEYFSSYGDLSAVELEDEPSDYDGVGSETLKNCSACVTFTTRRSAERAFLNGKCWQGKNLKFAWLTSSTSSNEPGSGQNSFAPNCLVDTD--QSVEKLACLDSQEASASGNGGPENSEINN 903          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: V7C0N2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G007600g PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.899e-41
Identity = 121/256 (47.27%), Postives = 155/256 (60.55%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIP----------------AQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAK-ASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGI-HPFV----LNKYKLDNRPTAFRVISPLPSDFAHIGC 966
            +FS++EEAEAALKAPDAVMGNRFIKLW ANRD I     N+G+GV VT RG  A+ +P                A +  Y    P + PKP   +GL VPP  +KKL  LE +KEELRKKQE+L+QKR +F+RQL+K EKQ+SG+KG+   EQA KR K+  A D AK AS P SS       +P      D +K   N +S SPK+   +    P G+ HP      +N+YKLDNRP AFR+I P+P+   ++  
Sbjct:  521 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIRSDSTNTGNGVIVTPRGQAAAFVPSHPIVTDRGKDIHQIDASKTTYEVSSPTDQPKPAITDGLKVPPPLQKKLVNLENLKEELRKKQEMLDQKRNEFKRQLNKFEKQASGLKGELSNEQATKRLKLGTASDVAKLASPPLSSDADVGITSPNAEAAADKNKQLVNTVSQSPKTSTAARLQEPTGLKHPIQPLMPVNRYKLDNRPAAFRIIPPVPAGLTNVAV 776          

HSP 2 Score: 118.242 bits (295), Expect = 4.122e-24
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETS-SAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVK--E*SPKGKAC 1857
            V VLKEHFS Y +L SVELEDV+  D    E      AHIT++T  +AE+A+ N KCW   NL+F WL  + S N    +E S SAPKEPL++DD  ++EKL  S++QEV   DGE++NS+ ++ +E   + E SE   S T +V   E SP+G  C
Sbjct:  774 VAVLKEHFSPYGELSSVELEDVQVNDSSQQE------AHITFTTRWAAERAFINGKCWNDLNLKFMWLTPTGSSNSTGGRERSLSAPKEPLDSDD-HSKEKLGNSLNQEVIESDGENKNSETRNGLELMEM-EPSEDPQSTTRQVSSPEHSPEGSVC 922          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A059AQP1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01752 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.496e-40
Identity = 128/275 (46.55%), Postives = 165/275 (60.00%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPA------QRKDYFQPIPL---------------NSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDIAVDPAKASTPRSSGPCA----SAATPCTM----------------GVTDMDKSTENILSHSPKS--KRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960
            +FS++EEAEAALKAPDAVMGNRFIKLW ANRD IPD  I+S +  S+T  G TA  +P       + KD  Q  PL               +  KP + NG  V P  +KKLE+LEQ+KEELRKK+E+L++KR DF+RQL KLEKQ+SGVKG+   EQAAKRQK+ +  D AKA TPRSS   A    S AT   M                G T   + T +++S    S   + +  S P G  P++ ++YKLDNRPT F+++ PLP+ FA +
Sbjct:  529 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIPDDGISSVNSASLTPHGGTAGSVPTILSIANRTKDNIQSTPLKAIDIPVAESALPSSDQSKPLTPNGSKVTPPLQKKLESLEQLKEELRKKREMLDRKRNDFKRQLDKLEKQASGVKGEVIAEQAAKRQKLGLEADAAKAVTPRSSDVAAVTERSFATADAMASSNDEVVDNENKLVEGATQGSRDTSSLISMEGSSSMNQLNLSSTPAGF-PYI-HRYKLDNRPTTFKILPPLPASFASV 801          

HSP 2 Score: 98.2117 bits (243), Expect = 9.175e-18
Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENED-VMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLI--SSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSP 1809
            V  LKEHFS + DL  +ELEDVE +D +  SETL   SAHI + T  SAEKA+A+ KCWQGHNLQF+WL   SSN + D    + SS   EP        E  ++    QE    +G++E S+ +   E+   AEVS+ +P
Sbjct:  801 VPALKEHFSSFGDLAILELEDVEGQDDINGSETLKTVSAHIGFVTRHSAEKAFAHGKCWQGHNLQFAWLATRSSNDMRD----QRSSPRAEPSTIHSAGKESHISL---QETG--NGDAEYSERQGDDENIDAAEVSQPNP 932          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: K7MVQ1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.455e-38
Identity = 120/255 (47.06%), Postives = 155/255 (60.78%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIP----------------AQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGI-HPFV----LNKYKLDNRPTAFRVISPLPSDFAHIGC 966
            +FS++EEAEAALKAPDAVMGNRFIKLW ANRD I      SG+GV VT RG   + +P                A +  Y    P +  KP   +G  VPP  +KKL  LE +KEELRKKQE+L+QKR +F+RQL+K EKQ+SG+KG+  TEQAAKR K+ +  D AK ++P+SS      A+P T    D +K   N +S SPK+   +      G+ HP      +N+YKLDNRP AF +I PLPS  A++  
Sbjct:  520 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIRKDSTTSGNGVIVTPRGQAPAFVPSHPVVTDRGKDIHQADASKTMYEVSSPTDQSKPVITDGPKVPPPLQKKLVNLENLKEELRKKQEMLDQKRNEFKRQLNKFEKQASGLKGEVSTEQAAKRLKMCVPSDVAKLASPQSSDADVGMASPHTEAAADKNKQLVNPVSRSPKASTATRLQESTGLKHPIQPLMPVNRYKLDNRPAAFCIIPPLPSGLANVAV 774          

HSP 2 Score: 89.7373 bits (221), Expect = 4.066e-15
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLI-----SSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQE 1719
            V VLKEHFS Y +L +VELEDV+  D    E      AHIT++T  +AE+A+ N KCW  HNL+F WL      S +S      + + SAPKEPL++DD  +EE L   ++QE
Sbjct:  772 VAVLKEHFSPYGELSAVELEDVQVNDSSQQE------AHITFTTRWAAERAFINGKCWNDHNLKFMWLTPTSSSSISSNATASRERSLSAPKEPLDSDD-HSEENLENCVNQE 877          
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0B2R5J4_GLYSO (Zinc finger CCCH domain-containing protein 41 OS=Glycine soja GN=glysoja_022168 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.613e-38
Identity = 118/255 (46.27%), Postives = 153/255 (60.00%), Query Frame = 1
Query:  271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIP----------------AQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGI-HPFV----LNKYKLDNRPTAFRVISPLPSDFAHIGC 966
            +FS++EEAEAALKAPDAVMGNRFIKLW ANRD I      SG+GV VT RG   + +P                A +  Y    P +  KP   +G  VPP  +KKL  LE +KEELRKKQE+L+QKR +F+RQL+K EKQ+SG+KG+  TEQA KR K+ +  D AK ++P+SS       +P T    D +K     +S SPKS   +      G+ HP      +N+YKLDNRP AFR+I PLP+  A++  
Sbjct:  520 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDSIRKDSTTSGNGVIVTPRGQAPAFVPSHPVVTDRGKDIHQADASKTMYEVSSPTDQSKPVITDGPKVPPPLQKKLVNLESLKEELRKKQEMLDQKRNEFKRQLNKFEKQASGLKGEVSTEQATKRLKMGVTSDVAKLASPQSSDADVGMTSPHTEATADKNKQLVYPVSQSPKSSTATRLQESTGLKHPIQPLMPVNRYKLDNRPAAFRIIPPLPAGLANVAV 774          

HSP 2 Score: 106.301 bits (264), Expect = 2.512e-20
Identity = 74/159 (46.54%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWL--ISSNSINDPISKETS-SAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVK--E*SPKGKAC 1857
            V VLKEHFS Y +L +VELEDV+  D    E      AHIT++T  +AE+A+ N KCW  HNL+F+WL   SS+S N   S+E S SAPKEPL++DD  +EEKL  S++QE    D E +NS+  + +E     E SE   S T +V   + SP+G  C
Sbjct:  772 VAVLKEHFSPYGELSAVELEDVQVNDSSQQE------AHITFTTRWAAERAFINGKCWNDHNLKFTWLTPTSSSSSNATGSREPSLSAPKEPLDSDD-HSEEKLDNSVNQESIVSDAEHKNSETNNGLE-LVEREPSEDPQSTTRQVSSPKQSPEGNFC 922          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
C3H41_ARATH5.119e-2740.23Zinc finger CCCH domain-containing protein 41 OS=A... [more]
C3H27_ORYSJ1.248e-1535.96Zinc finger CCCH domain-containing protein 27 OS=O... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2Q2H4_GOSRA2.149e-5159.11Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RPL5_GOSRA8.663e-5059.11Uncharacterized protein OS=Gossypium raimondii GN=... [more]
F6HUX2_VITVI1.969e-4647.74Putative uncharacterized protein OS=Vitis vinifera... [more]
W9S0N7_9ROSA5.300e-4450.19Zinc finger CCCH domain-containing protein 41 OS=M... [more]
B9GH91_POPTR3.100e-4354.26RNA recognition motif-containing family protein OS... [more]
B9IJM5_POPTR1.311e-4150.75Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V7C0N2_PHAVU4.899e-4147.27Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A059AQP1_EUCGR4.496e-4046.55Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
K7MVQ1_SOYBN1.455e-3847.06Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2R5J4_GLYSO1.613e-3846.27Zinc finger CCCH domain-containing protein 41 OS=G... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 93..128
NoneNo IPR availablePANTHERPTHR14398RNA RECOGNITION RRM/RNP DOMAINcoord: 4..229
NoneNo IPR availablePANTHERPTHR14398:SF0SECOND MITOTIC WAVE MISSING, ISOFORM Ccoord: 4..229

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092533 ID=g.barbadense_cottongen_reftransV1_0092533; Name=g.barbadense_cottongen_reftransV1_0092533; organism=Gossypium barbadense; type=contig; length=2170bp
CTTTCTAAACACACACACACAAAAAAAAAAAACCTTCAAATTCTCCTTGC
TTCTCTGACTATGGGACTTCTCCAGAGGTCTGCCCTACCGCCGCCGTAGC
CAGTGGCCGGCATTGCAGGAAAACGAGCCTTTACCCTTGCCTCCGAGCGA
ATTTGAAGGCCAAGCAATCGGAGCCCGAATAGCCGAGAAGTGATGGTTCT
CAATCCCATCCCTTTCACGGGTTGATCCTCGACGACAGAGAAGGACTCTC
CGACATCGGCCATGGGAAACGAGTTTTCAAGGAAGGAAGAGGCAGAAGCT
GCTCTGAAGGCACCCGATGCTGTAATGGGTAACCGCTTTATTAAGCTCTG
GTGTGCAAATCGGGATAGAATACCTGATGGTGACATAAACAGTGGCAGTG
GTGTGTCAGTAACTTCACGTGGTCTAACAGCTTCTGTTATTCCAGCTCAG
AGGAAAGATTATTTTCAACCTATTCCTCTGAATTCCCCCAAGCCTCATAG
TATGAATGGTCTCATGGTTCCTCCTGCACCGCGGAAAAAATTAGAGACTT
TGGAGCAGATGAAAGAGGAACTACGCAAGAAGCAGGAACTGCTGGAACAG
AAGCGGAAGGACTTCCGGCGCCAGTTGCACAAACTTGAGAAACAATCTAG
TGGTGTCAAAGGTGATACTGAACAAGCTGCCAAGAGGCAAAAGGTGGACA
TTGCGGTTGATCCTGCAAAAGCTTCAACTCCAAGATCCTCTGGACCTTGT
GCTTCTGCTGCAACACCATGCACAATGGGGGTGACAGATATGGACAAATC
AACAGAGAATATTCTGTCCCACAGTCCTAAATCAAAGCGGCAGTCTTGTC
AATCAGCACCAGTAGGCATTCATCCATTCGTGTTGAATAAATACAAATTG
GATAACAGACCTACTGCTTTTAGAGTTATTTCACCATTGCCTTCTGATTT
TGCACATATTGGTTGCTCTCTCCTTTTCCTTGTCTGAGGATATTGTTTTC
TGGCTCCATCTTTTGTGAGGATGAAATTTACAATGATTCATCATCTTTTA
TATATTGAAAAGGAAAAGATGAAATAAGCACATTTTGCAAACAATATATG
TCTCTTGTGCTCAGATGTTAGGGATGCATGTGTCCGGCATGGATATATTC
AATTTCTCCAAGTTTTTCATGTATTCGGAAAAACCTAGGCAGATCATATC
CCTACACCTATGTGTGTATGTGTTGGATATAGGTGTTAGGCTCAAGTACT
TGAAAAGAAAAATGATTAGTCATATAGTAGCATAACTTATTAATATGTCT
AGTTATTTGTAAATTATTCCAAAGTTCTTCGCTTAATGGCATAAAACTCG
ATTGGCTCTTCTGTTTTTCATTGTCATCAATGAAACAATTATTAGGTCGA
TGTTTTGAAGGAGCACTTCTCACAATATAGTGATCTTTTCTCTGTGGAGC
TGGAAGATGTGGAAAATGAAGATGTTATGGTATCTGAGACACTGAATGAT
TGCTCAGCTCATATAACTTACAGCACATGCCGCTCGGCAGAAAAGGCATA
TGCAAATAGTAAATGCTGGCAGGGTCACAATTTGCAGTTTTCATGGTTGA
TATCTAGCAATTCAATCAATGATCCGATTAGCAAAGAAACTTCTTCCGCA
CCAAAGGAGCCTTTGGAAGCTGATGATATCCAGACAGAAGAAAAATTAGC
ATGCAGCATCTCCCAAGAAGTTGCGTCAGATGATGGGGAATCTGAGAATT
CTGATGTAAAGAGTTTTGTGGAGCATAAGTATTTAGCTGAAGTTTCAGAA
CATAGTCCATCTCCAACGTCCAGAGTGAAAGAGTAGTCACCTAAAGGCAA
AGCATGTTAAATATAGGGGGCTGTCTCTGGTTTTTTTACGACAAGGTAAA
GTATTCAATTTGTTGAAGTCTAGTCGGCACCAAGGTTTAACAGTTTCACT
TCAGTAGCAAATTGTGTTGTCTTTTGAAATTAATTTTGTAGGACTAAATG
GATTAAAAGAATAGGAAAAAAGAACAATACATTAAGATTTTATTACATGA
AAAGTGATTGGGAACTGATTCCCATTTTAGTTGGGAGTTTGGGCTCATTT
TTAGATAGGAAATTAGGTATATAACCATGCAATATTTCCTCTGTTAAAAA
ACCGATCTATTTAAGGGTCC
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