g.barbadense_cottongen_reftransV1_0092164, g.barbadense_cottongen_reftransV1_0092164 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092164
Unique Name	g.barbadense_cottongen_reftransV1_0092164
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At07	chromosome	g.barbadense_cottongen_reftransV1_0092164:1..2359 . At07:23595119..23597477 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.547e-29
Identity = 54/143 (37.76%), Postives = 86/143 (60.14%), Query Frame = 3

Query: 1647 AIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYG-MGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWI 2072
            A+P YAMSCF L   LC ++     +FWW     KR I W  W+ +C  KE+ G +G R++  FN ALLAKQ  R+I  P +L++R+ +++YFP+   +   +G + SY W++I   + +L++GL   +G G++  +  D WI
Sbjct:    2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144

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BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.022e-21
Identity = 52/200 (26.00%), Postives = 101/200 (50.50%), Query Frame = 3

Query: 1005 TVE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLFADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVF-YSSISKGD--MKNEIS--------EFLGVRVSTNLEKYFGLPSMVGRRKESFLNLKERIS 1571
             ++  F+   + ++G    ++ L+    +  +  + +NG + + F    G RQG PLSP LF +  E L++ +R    E  +KGI      +++S LFADD I++ E T      + E++KEY + SG   N  KS  F Y++ ++ +  +K+ I         ++LGV ++ +++  +         KE++  L++ I+
Sbjct:  606 NIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSEEIKLS-LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLY---------KENYETLRKEIA 792

HSP 2 Score: 40.817 bits (94), Expect = 6.022e-21
Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 1

Query:  712 FKQTYIALIPK-SPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILG 891
            F +  I LIPK   +P    N+RPISL  +  K + K +TN +Q  I   I+  Q  FI G
Sbjct:  508 FYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPG 568

HSP 3 Score: 37.3502 bits (85), Expect = 6.022e-21
Identity = 13/36 (36.11%), Postives = 24/36 (66.67%), Query Frame = 2

Query:  533 LSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRY 640
            L+ P ++ EI + +Q +   K+PGPDGF + F++ +
Sbjct:  448 LNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTF 483

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.105e-16
Identity = 54/186 (29.03%), Postives = 90/186 (48.39%), Query Frame = 3

Query: 1536 KESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWAT-----KGILAKGLCWKVGTGLNFSIANDAWIPG 2078
            K++F  + ER+S +  G   + LS   +    K+VL ++P ++MS   L  S+   ++ +   F W     K+  H  +W  +C PK+E G+G+R     N AL++K G RL+   +SL T V + KY   E   +  L  K S  W + W +     + +++ G+ W  G G       D W+ G
Sbjct:   10 KDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGS--WSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSG 193

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.923e-12
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 3

Query: 1113 INGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISH-LFADD 1307
            ING+   +  P+RGLRQGDPLSP+LF++C+E LS L R A  +G L GI+       I+H LFADD
Sbjct:   14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADD 79

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.220e-10
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1

Query:  715 KQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGR-LFRIMFF*LMKSYIVFAR 948
            ++  ++L+PK  + R + N+RP+SL +  YK VAKAI+  L+ V+   I+  QS  + GR +F  +F  L++  + FAR
Sbjct:  506 RRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVF--LIRDLLHFAR 582

HSP 2 Score: 41.2022 bits (95), Expect = 1.220e-10
Identity = 26/83 (31.33%), Postives = 37/83 (44.58%), Query Frame = 2

Query:  416 ISEAATIFFQRLFTSNIIG-DLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKD 661
            I + A  F+Q LF+ + I  D    L       S     +L +P    E+  AL+ M   K+PG DG    FF+ +W   G D
Sbjct:  405 IRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPD 487

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 41.9726 bits (97), Expect = 8.609e-9
Identity = 23/80 (28.75%), Postives = 44/80 (55.00%), Query Frame = 2

Query:  413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTK----LSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRY 640
            EI      F++RL+++ +  +L  +   + +    +LN      L+SP + KEI+  +  + + K+PGPDGF A F++ +
Sbjct:  413 EIQNTIRSFYKRLYSTKL-ENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTF 491

HSP 2 Score: 41.2022 bits (95), Expect = 8.609e-9
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1

Query:  712 FKQTYIALIPK-SPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILG 891
            F +  I LIPK   +P  + NFRPISL  +  K + K + N +Q+ I   I+  Q  FI G
Sbjct:  516 FYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPG 576

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q7X970_ORYSJ (BZIP-like protein OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 5.992e-99
Identity = 162/404 (40.10%), Postives = 226/404 (55.94%), Query Frame = 3

Query:  876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGR-LLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIP 2075
             F    +I DN LLA+E  H+  + +  N       L L K    V+  FL+  M ++GF R WV  +MKC+T+  Y V  NG+  + F PTRGLRQGDPL PFLFL  ++GLSLL++  + +  L   K CR    ISHL FADD +LF +A  R+A ++KE+L  Y   +GQ  N  K ++     S   +   ISE L V      ++Y G P+  GR  K  F +L+ +I WK   + G   LS G K++ IK+V+QAIP Y M  F L  S+  ++  +   FWW    G+R  HW  W  +  PK   G+G R+   FN ALLA+Q  RLIT PDSL  RV KAKYFP+   +++  G+ +S  W++I     +L KG+ W+VG G +  I  D+W+P
Sbjct: 1273 AFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKI-WKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLP 1675

HSP 2 Score: 59.6918 bits (143), Expect = 5.992e-99
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1

Query:  706 EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            E    T I LIPK   P  L +FRPISLC V+YK V+K + N L+ ++   +   QSAF+ GR+
Sbjct: 1216 EGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRM 1279

HSP 3 Score: 53.1434 bits (126), Expect = 5.992e-99
Identity = 26/86 (30.23%), Postives = 47/86 (54.65%), Query Frame = 2

Query:  407 SLEISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664
            ++++   AT +FQ ++T++   +   +   I++  +  +N KL   F   EI  A+  +   K+PGPDGFPA F++R W     D+
Sbjct: 1116 TMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADI 1201

HSP 4 Score: 35.039 bits (79), Expect = 5.992e-99
Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = 1

Query:  253 LKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLELRN 417
            +  LLY E    +M   Q +RVNWLK   +N  FFH     R ++N IS L   N
Sbjct: 1059 MNELLYRE----EMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDAN 1109

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: M5W5K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020282mg PE=4 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 6.173e-98
Identity = 179/440 (40.68%), Postives = 262/440 (59.55%), Query Frame = 3

Query:  897 I*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLF-ADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYS-SISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFT-MTDFKVADLINSAERKWKGELIVDTFGEE 2201
            I DN ++A+E+LH   +K  G +      + + K    VE  FL+A+M  MGF   W+ L+M+C+TT SY+  +NG+      P RGLRQGDPLSP+LFL+C+E LS L+  A    LL G+  CR    +SHLF ADD  LF  A  +    +  I ++Y+  SGQ  + EKS V +S ++ + D  N ++  LGVR     + Y GLP+ VGR R++ F +LKERI  K +G   +LLS   K+I +K V QA+P Y M+CF +   LC EI+ + A++WW +  G+R IHW  W  +C PK+E G+G RN+  FN+ALLAKQ  RLI  P+SLV  + KA+YF N   L + +G+  SY+W+++   + ++ KG  W++G G +  I  D W+P + +F++SS       + KV  LIN    +WK +L+   F  E
Sbjct:  909 ISDNSIVAFELLHMMHKKNQGRQGYLALKIDMSKAYDRVEWSFLEALMKGMGFAPRWIQLIMECVTTVSYSFMLNGNPVGYVIPQRGLRQGDPLSPYLFLLCAEALSSLILQAERRNLLHGVNLCRGAPSVSHLFFADDSFLFLRADQQDCEQLSIIFQKYEMVSGQKIHLEKSCVSFSINMDRTDQDN-LAAVLGVRRVDQHDVYLGLPTHVGRSRRQCFNSLKERIWKKIQGWKAKLLSFAGKEILLKVVAQAVPIYMMNCFLIPKCLCNEIQQVMARYWWVEQDGQRKIHWLSWNKLCLPKQEGGLGFRNLYAFNMALLAKQLWRLIQTPNSLVACILKARYFKNCSILEAQIGHSPSYIWQSLCKARVLIEKGSRWRIGNGHSVRIWGDRWLPNSESFQVSSPQVEGFEEAKVNSLINPVTLQWKEDLLQAWFSAE 1347

HSP 2 Score: 59.3066 bits (142), Expect = 6.173e-98
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1

Query:  721 TYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGR 894
            T++ALIPK   P+ ++  RPISLC V+YK  AK +T  L+ ++   I   QSAF+ GR
Sbjct:  850 THVALIPKVHEPKNMMQLRPISLCNVLYKIGAKVLTTRLKAILPTLISDTQSAFVPGR 907

HSP 3 Score: 22.3274 bits (46), Expect = 6.173e-98
Identity = 10/33 (30.30%), Postives = 18/33 (54.55%), Query Frame = 2

Query: 2210 ILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL 2308
            I  IPL+     D ++   E  G+++VRS + +
Sbjct: 1352 IRNIPLSFRHPPDILIWHFERDGQYTVRSGHDV 1384

HSP 4 Score: 73.559 bits (179), Expect = 4.979e-18
Identity = 40/119 (33.61%), Postives = 67/119 (56.30%), Query Frame = 2

Query:  416 ISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEF---QILTRNVNFSNKRTLRLFQKVQIPEH 763
            +++    +FQ LF+S    + + ++ G++   + E+N  L + F  +EIK AL  M  +KAPGPDGF   F+++YW I G+DV    L F     L + +NF++   + L  KV  P++
Sbjct:  748 LTQTVVNYFQHLFSSTGSSEYTEVVDGVRGRVTEEMNQALLAVFTPEEIKIALFQMHPSKAPGPDGFSPFFYQKYWPIVGEDVVAAVLHFFKTGKLLKRINFTH---VALIPKVHEPKN 863

HSP 5 Score: 46.9802 bits (110), Expect = 4.979e-18
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 1

Query:  253 LKRLLYMEID----KHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLE 408
            L+  L  ++D    K+++Y  Q +R  WLK G +N  FFH   S+R+RRN IS LE
Sbjct:  680 LRNALTKQLDSLMAKNEVYWRQCSRATWLKAGDRNSKFFHYKASSRRRRNTISALE 735

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: M5W5F3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026368mg PE=4 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.306e-97
Identity = 178/458 (38.86%), Postives = 271/458 (59.17%), Query Frame = 3

Query:  879 FHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSLWRESLT 2243
            F    +I DNV+ A+EI+++    + G        L + K    VE  FL+A+ML++GF+  WV+ VM CI+TT+++V   G+      P RGLRQG PLSP+LFL+C+EG S L+R A   G L G++  R    ++HL FADD ILF +AT +  M ++ + + Y+  +GQ  N+ KS +  S  +     + I   L V V    E Y GLP++ G+ RK+ F +LK+++     G   +LLS+  K+I IK+VLQAIPTY+MSCF +   LC E+  I A+FWW K   KRGIHW +W+ +C  K   G+G R++  FN ALLAKQ  R++  P+SLV R+F+A+Y P+  FL + +G   S++W+++   K +L KGL W+VG+G++  +  D W+P    F++ S P      +V DL  S+  +W   L+ D F ++   + + +   SL 
Sbjct:  243 FVPNRMILDNVMAAFEIMNTIKGVKKGRDVQMALKLDMAKAYDRVEWVFLRAMMLKLGFSATWVSKVMDCISTTTFSVLWKGTPVGHIMPQRGLRQGCPLSPYLFLICTEGFSCLLRGAERRGDLVGVQVARGAPSVTHLLFADDSILFMKATNKDCMALETLFQTYEEVTGQQINYSKSALSLSPNATRADFDMIEGVLNVPVVRCHENYLGLPTIAGKGRKQLFQHLKDKLWKHISGWKEKLLSRAGKEILIKAVLQAIPTYSMSCFRIPKGLCKELNGIMARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPFLEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSG-QWNVPLLKDIFWDQEVDAILQIPLASLA 699

HSP 2 Score: 64.6994 bits (156), Expect = 1.306e-97
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1

Query:  682 ISNSDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            I N +     F  T IALIPK   P  +  FRPISLCT +YK +AK I N L+ V+   I + QSAF+  R+
Sbjct:  177 ILNGEGSVREFNHTLIALIPKVKMPTIVSEFRPISLCTTVYKMIAKTIANRLKTVLSHVITETQSAFVPNRM 248

HSP 3 Score: 70.0922 bits (170), Expect = 2.077e-14
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 2

Query:  437 FFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEFQILTRNVNFSNKRTLRLFQKVQIP 757
            +F+ LF+S+    +  +L  ++   +  +N +L   F  +E++  L  M  TKAPG DG PALFF++YWHI G  V   CL+      +V   N   + L  KV++P
Sbjct:   95 YFKTLFSSSGGQQMERILNEVRPVITSAMNAQLLQAFTREELEHTLFQMFPTKAPGHDGMPALFFQKYWHIVGDKVAKKCLQILNGEGSVREFNHTLIALIPKVKMP 201

HSP 4 Score: 38.5058 bits (88), Expect = 2.077e-14
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 1

Query:  277 IDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNII 396
            ++K ++   Q +RV WLK G KN  FFH   S+R +RN +
Sbjct:   32 LEKQEIMWRQRSRVAWLKEGDKNTHFFHGRASSRSKRNRV 71

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: S8DKM9_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_11401 PE=4 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.030e-97
Identity = 161/455 (35.38%), Postives = 252/455 (55.38%), Query Frame = 3

Query:  876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVG-RRKESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWW-QKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFR-LSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL 2225
             F S   I DN+LLAYE+ HS    R  ++      L + K    +E  FL+ ++ + GF       +M+ +++ +Y++ INGS      PTRG+RQGDP+SP+LF++CS+ LS L+          GI+      +ISHL FADD ++F  AT      I+ +L  Y + SGQ  N EKS +   S +    +  +S  +GV ++ +L KY GLPSM+G  +K +F +LK+RI  +      + LS+  K + IKSVLQ+IP+Y M CF +  +L  E+  +F++FWW  +G+ K  +H   W  +C    + G+G RN++ FN ALLAKQ  R+ T  D L++RV + KY+ N  FL + LG   S+ W+++   K +L  GL W+ G G++ ++ N  W+P A +F+ +   P      +V+DLI+     W    I   F    A + +S+
Sbjct:  915 AFLSGRSITDNILLAYELNHSIKLARRQSKRYGALKLDVSKAFDRLEWPFLEQVLRRHGFPASTTDTIMRLVSSATYSILINGSPEGHIVPTRGIRQGDPMSPYLFILCSDTLSRLLHEEGAHNPDLGIQLSPTVPKISHLLFADDTLIFSAATLTAMEGIRSVLTRYAAISGQLINLEKSALSVPSEADPHYRQLLSTAVGVPLTDSLGKYLGLPSMIGISKKAAFRSLKDRIQGRILHWHTKFLSKAGKMVLIKSVLQSIPSYTMQCFKIPTTLIRELNSLFSQFWWSDRGHSK--MHLLAWDKLCEAPVQGGLGFRNLTTFNQALLAKQCWRIFTKDDLLLSRVLQGKYYKNTSFLEARLGRNPSFTWRSLLTAKNLLLSGLRWRPGDGVHINVWNSPWLPRAGSFKPMFRNPALSPHLRVSDLISPDTCDWNRSYIQQVFLPADAATILSI 1367

HSP 2 Score: 56.9954 bits (136), Expect = 3.030e-97
Identity = 25/76 (32.89%), Postives = 46/76 (60.53%), Query Frame = 2

Query:  437 FFQRLFTSNIIG--DLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGK 658
            ++Q LFTS+     ++   L  I ++ + ++   L  P+NA E+  A++ M+   +PGPDGFP +F+++YW   G+
Sbjct:  766 YYQDLFTSSPPDPIEMERALSIIPRTITDDMRAILERPYNAAEVWPAVRRMKPLSSPGPDGFPPVFYQKYWPTVGQ 841

HSP 3 Score: 53.1434 bits (126), Expect = 3.030e-97
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 1

Query:  712 FKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGR 894
               ++I LIPK  NP+   ++RPISL  V YK  +K + N L+ ++   + + Q+AF+ GR
Sbjct:  860 LNHSHIVLIPKKSNPQEPAHYRPISLSNVAYKIASKMVANRLKPIMERIVSKEQAAFLSGR 920

HSP 4 Score: 36.5798 bits (83), Expect = 3.030e-97
Identity = 15/50 (30.00%), Postives = 30/50 (60.00%), Query Frame = 1

Query:  283 KHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLELRN*RGCY 432
            + +MY +Q  +++WL+ G +N  FFH   S ++ +N I+   ++N  G +
Sbjct:  705 QEEMYWKQRGKIHWLRCGDRNTAFFHASASEKRTQNRIA--GIKNAHGLW 752

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: A0A096UVM6_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 1.188e-96
Identity = 129/332 (38.86%), Postives = 196/332 (59.04%), Query Frame = 3

Query:  876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISH-LFADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRK-ESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG 1862
             F    +I DN+LLAYE+ H   ++R+G + +    L + K    VE  FL+ +M+++GF R WV L+MKCIT+  Y + +N  +  +  P RGLRQGDPLSP+LFL C+EG S ++  A   G L+GI+ CR  L +SH LF DD +L  EA+   A  I  IL  Y+ CS Q  N +KS++F+S  +    KN +   +G+ V     KY GLP+ +G+ K ++F  ++E++  K +G   +LLS+  K+I IK+  Q IP YAM C     + C ++  +  ++WW +      IHW  W+ +  PK + G+G RN+  FN+A+LA+Q 
Sbjct:  238 AFVPGRMISDNILLAYELTHFIKRRRSGPKGVAALKLDMSKAYDRVEWKFLEDMMIKLGFRRVWVQLIMKCITSVKYQIKVNQGKTDVIVPQRGLRQGDPLSPYLFLFCAEGFSAMLNEAEANGRLRGIRICRNALSVSHLLFGDDSLLLMEASEGAAQEINRILSTYEQCSRQMINKDKSSIFFSKNTDEGRKNNMKRIMGINVEGLTGKYLGLPTYIGKGKAKNFSYIREKVWKKIQGWKEKLLSKAGKEILIKAAAQTIPVYAMGCLDPTKTFCDDLSALTGRYWWSQMDKTNKIHWISWEKLSKPKTDGGLGFRNLHYFNLAMLARQA 569

HSP 2 Score: 58.151 bits (139), Expect = 1.188e-96
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 2

Query:  437 FFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664
            +F  LFTS    +   +L  I       +N  L + +  +E++ AL  +   KAPGPDG PA FF+R+W I G  V
Sbjct:   91 YFYNLFTSTTDQNNDAILQTITPKVHQGMNEALCAEYTEEEVRRALFSIGDLKAPGPDGMPANFFKRFWDIVGSQV 166

HSP 3 Score: 56.225 bits (134), Expect = 1.188e-96
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query:  688 NSDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            N     E +  T I LIPK+    ++ + RPISLC V+YK V+K I N L+ V+   I   QSAF+ GR+
Sbjct:  175 NGGDMPEGWNNTTIVLIPKTTRTESVKDLRPISLCNVLYKVVSKVIANRLKLVLPDIISPNQSAFVPGRM 244

HSP 4 Score: 51.2174 bits (121), Expect = 1.188e-96
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 1

Query:  250 FLKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLE 408
            FLK  L     +  +Y  Q A V WL++G KN  FFH F S RKRRN IS L+
Sbjct:   19 FLKEKLERLESQKDIYWRQRAHVKWLEYGDKNTAFFHAFASERKRRNNISKLK 71

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
M310_ARATH	4.547e-29	37.76	Uncharacterized mitochondrial protein AtMg00310 OS...	[more]
LIN1_NYCCO	6.022e-21	26.00	LINE-1 reverse transcriptase homolog OS=Nycticebus...	[more]
RNHX1_ARATH	2.105e-16	29.03	Putative ribonuclease H protein At1g65750 OS=Arabi...	[more]
M1250_ARATH	1.923e-12	53.03	Uncharacterized mitochondrial protein AtMg01250 OS...	[more]
YTX2_XENLA	1.220e-10	36.71	Transposon TX1 uncharacterized 149 kDa protein OS=...	[more]
LORF2_MOUSE	8.609e-9	28.75	LINE-1 retrotransposable element ORF2 protein OS=M...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
Q7X970_ORYSJ	5.992e-99	40.10	BZIP-like protein OS=Oryza sativa subsp. japonica ...	[more]
M5W5K8_PRUPE	6.173e-98	40.68	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
M5W5F3_PRUPE	1.306e-97	38.86	Uncharacterized protein (Fragment) OS=Prunus persi...	[more]
S8DKM9_9LAMI	3.030e-97	35.38	Uncharacterized protein OS=Genlisea aurea GN=M569_...	[more]
A0A096UVM6_WHEAT	1.188e-96	38.86	Uncharacterized protein OS=Triticum aestivum PE=4 ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 1..141
None	No IPR available	PANTHER	PTHR19446:SF340	REVERSE TRANSCRIPTASE-RELATED	coord: 1..141

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092164 ID=g.barbadense_cottongen_reftransV1_0092164; Name=g.barbadense_cottongen_reftransV1_0092164; organism=Gossypium barbadense; type=contig; length=2359bp
CTTTCAAATTTTCAATCCTTGACACTAAGACACTAATTAATCAACTAGGT
ACCAATTTTAAACGTATCGACGTTACTAATCCTTCCTCGTGCGTGACCAA
CTCCCAAACCTATTTTCTTAATTTACGTAGAGCAAAATTATTTTTTAAAT
AAATAAAATTATTTATTAAAAAACTACTTTAACGAGATGACCACATCACA
CCTAGTCGAAAAGGATCAATCGTGACTACCGGTTTTTGTGTTCATCATTT
TTCTAAAAAGACTTCTTTATATGGAAATTGACAAACATAAAATGTATTGA
GAACAAATGGCAAGAGTAAATTGGCTAAAATTTGGGTACAAAAATTTTGT
ATTTTTTCATAAGTTCACCTCAGCTCGAAAACGAAGAAACATAATCTCCA
TGTTGGAGCTTAGAAATTAGCGAGGCTGCTACAATATTTTTTCAAAGGTT
GTTTACGTCAAACATAATTGGCGATCTGTCTCACTTGCTAATGGGTATTA
AAAAGAGTTTTTCTTATGAATTAAATACTAAACTTTCGTCACCGTTCAAT
GCAAAAGAAATTAAGACAGCTTTACAAGGTATGGAGTCTACTAAAGCACC
AGGTCCCGATGGTTTTCCAGCGTTATTTTTTCGGAGGTACTGGCACATTG
CTGGAAAAGACGTTAAAAATTTTTGTTTGGAATTTCAAATTCTGACCAGA
AATGTGAATTTTTCAAACAAACGTACATTGCGCTTATTCCAAAAAGTCCA
AATCCCAGAACACTAGTTAATTTTAGACCTATAAGCTTATGTACGGTTAT
CTACAAATTTGTGGCAAAAGCAATAACAAATTGTCTTCAAGATGTTATTG
GGTGATGTATTTATCAGGCACAAAGTGCTTTCATTCTCGGGAGATTATTT
AGGATAATGTTCTTCTAGCTTATGAAATCCTACATAGTTTTTGCCAGAAA
CGCACGGGTAATAGGGATATATGGCAGTGAAACTTAATATTAGGAAAGCT
TATGACAGTCGAATAGGGTTTTCTTCAGGCCATAATGTTACAGATGGGAT
TCACAAGAGACTGGGTGGCACTTGTTATGAAGTGCATTACTACAACCTCG
TATGCAGTAAATATTAACGGAAGTAGGGCAAGAATTTTTTAACCAACTAG
GGGGCTTCGACAAGGTGATCCTCTTAGCCCTTTTCTTTTTCTTATGTGCA
GTGAGGGTCTCTCATTATTGATGAGATTGGCAATGGGGGAAGGGCTATTA
AAAGGAATAAAGACTTGTAGAAGAGGCCTAGAGATTTCCCACCTTTTTGC
AGATGATTGCATTCTGTTCGACGAAGCAACAACAAGGAAAGCAATGATGA
TCAAAGAAATATTGAAGGAATATAAAAGCTGTTCAGGCCAATGTGGAAAT
TTTGAAAAATCAACAGTATTTTATAGTTCGATTTCAAAAGGAGACATGAA
GAACGAAATTTCAGAGTTCCTAGGAGTGAGGGTTTCAACAAACTTGGAGA
AATACTTCGGGCTCCCTAGCATGGTTGGCAGAAGAAAGGAGTCTTTTCTA
AACCTTAAGGAAAGGATTTCTTGGAAATTTGAAGGACGGAGTGGTAGACT
ATTATCACAAGGGGTAAAGGATATCTTCATCAAATCAGTTCTTCAAGCAA
TACCTACCTATGCTATGTCTTGTTTCTTCCTACGAAATTCATTGTGCGGA
GAAATTGAAATGATTTTCGCGAAATTCTGGTGGCAAAAAGGGTATGGAAA
GAGAGGTATTCATTGGTGCCAGTGGAAGCACATGTGTCACCCTAAGGAAG
AATATGGAATGGGCTTAAGGAATATGTCTCAATTTAATATAGCGCTTTTA
GCAAAACAAGGGTGAAGGCTTATAACCAATCCAGATTCTTTAGTTACGAG
AGTTTTTAAAGCGAAGTACTTCCCGAATGAGGATTTTTTAAATTCATGTT
TGGGGAATAAAAACTCGTATGTTTGGAAAAATATATGGGCGACTAAGGGT
ATCTTGGCAAAAGGTCTTTGTTGGAAGGTGGGTACGGGATTGAACTTCTC
TATTGCCAACGATGCATGGATTCCAGGTGCAATTAATTTTAGATTATCCT
CGGTTCCTTTTACTATGACAGATTTTAAAGTTGCTGATTTGATTAATAGT
GCTGAACGTAAATGGAAAGGAGAGTTAATTGTTGATACCTTTGGGGAAGA
AGTAGCAGGATCCTTCGTATCCCTCTGGCGAGAGAGCCTCACGATGATTT
CATGGTGTGTAGTGGTGAGCCGTCGGGAGAATTTTCAGTGCGGAGCGCCT
ACAAACTATTACAGACTTCGGATCCTAGAGCTTATGCTTTACAAAACATC
TATAGGGAT

Search form

g.barbadense_cottongen_reftransV1_0092164, g.barbadense_cottongen_reftransV1_0092164 (contig) Gossypium barbadense

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