g.barbadense_cottongen_reftransV1_0092164, g.barbadense_cottongen_reftransV1_0092164 (contig) Gossypium barbadense

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.547e-29
Identity = 54/143 (37.76%), Postives = 86/143 (60.14%), Query Frame = 3

Query: 1647 AIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYG-MGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWI 2072
            A+P YAMSCF L   LC ++     +FWW     KR I W  W+ +C  KE+ G +G R++  FN ALLAKQ  R+I  P +L++R+ +++YFP+   +   +G + SY W++I   + +L++GL   +G G++  +  D WI
Sbjct:    2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.022e-21
Identity = 52/200 (26.00%), Postives = 101/200 (50.50%), Query Frame = 3

Query: 1005 TVE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLFADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVF-YSSISKGD--MKNEIS--------EFLGVRVSTNLEKYFGLPSMVGRRKESFLNLKERIS 1571
             ++  F+   + ++G    ++ L+    +  +  + +NG + + F    G RQG PLSP LF +  E L++ +R    E  +KGI      +++S LFADD I++ E T      + E++KEY + SG   N  KS  F Y++ ++ +  +K+ I         ++LGV ++ +++  +         KE++  L++ I+
Sbjct:  606 NIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSEEIKLS-LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLY---------KENYETLRKEIA 792          

HSP 2 Score: 40.817 bits (94), Expect = 6.022e-21
Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 1

Query:  712 FKQTYIALIPK-SPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILG 891
            F +  I LIPK   +P    N+RPISL  +  K + K +TN +Q  I   I+  Q  FI G
Sbjct:  508 FYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPG 568          

HSP 3 Score: 37.3502 bits (85), Expect = 6.022e-21
Identity = 13/36 (36.11%), Postives = 24/36 (66.67%), Query Frame = 2

Query:  533 LSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRY 640
            L+ P ++ EI + +Q +   K+PGPDGF + F++ +
Sbjct:  448 LNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTF 483          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.105e-16
Identity = 54/186 (29.03%), Postives = 90/186 (48.39%), Query Frame = 3

Query: 1536 KESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWAT-----KGILAKGLCWKVGTGLNFSIANDAWIPG 2078
            K++F  + ER+S +  G   + LS   +    K+VL ++P ++MS   L  S+   ++ +   F W     K+  H  +W  +C PK+E G+G+R     N AL++K G RL+   +SL T V + KY   E   +  L  K S  W + W +     + +++ G+ W  G G       D W+ G
Sbjct:   10 KDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGS--WSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSG 193          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.923e-12
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 3

Query: 1113 INGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISH-LFADD 1307
            ING+   +  P+RGLRQGDPLSP+LF++C+E LS L R A  +G L GI+       I+H LFADD
Sbjct:   14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADD 79          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.220e-10
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1

Query:  715 KQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGR-LFRIMFF*LMKSYIVFAR 948
            ++  ++L+PK  + R + N+RP+SL +  YK VAKAI+  L+ V+   I+  QS  + GR +F  +F  L++  + FAR
Sbjct:  506 RRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVF--LIRDLLHFAR 582          

HSP 2 Score: 41.2022 bits (95), Expect = 1.220e-10
Identity = 26/83 (31.33%), Postives = 37/83 (44.58%), Query Frame = 2

Query:  416 ISEAATIFFQRLFTSNIIG-DLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKD 661
            I + A  F+Q LF+ + I  D    L       S     +L +P    E+  AL+ M   K+PG DG    FF+ +W   G D
Sbjct:  405 IRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPD 487          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 41.9726 bits (97), Expect = 8.609e-9
Identity = 23/80 (28.75%), Postives = 44/80 (55.00%), Query Frame = 2

Query:  413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTK----LSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRY 640
            EI      F++RL+++ +  +L  +   + +    +LN      L+SP + KEI+  +  + + K+PGPDGF A F++ +
Sbjct:  413 EIQNTIRSFYKRLYSTKL-ENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTF 491          

HSP 2 Score: 41.2022 bits (95), Expect = 8.609e-9
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1

Query:  712 FKQTYIALIPK-SPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILG 891
            F +  I LIPK   +P  + NFRPISL  +  K + K + N +Q+ I   I+  Q  FI G
Sbjct:  516 FYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPG 576          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: W5HDK0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 4.584e-122
Identity = 180/448 (40.18%), Postives = 255/448 (56.92%), Query Frame = 3

Query:  891 EII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRK-ESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL 2225
             II DN+LLAYE+ H   ++R G        L + K    VE  FL+ IM+++GF  DWV LVMKCITT  Y V +N S      P RGLRQGDPLSP+LFL+C+EG S ++  A   G LKGIK CR    ISHL FADD ++  EA+   A ++  IL+ Y++CS Q  N EKS + +S  +    K E+   L +       KY GLP+ +G+ K ++F  LK++   K  G   +LLS+  K+I IK+  QAIP Y M+CF +  +L  ++  +  +FWW +   +  IHW  W+ +  PK E G+G R++  FN+A+LA+Q  RL+ NP SL  +V  AKY P    L +   N  SY W++I     +L KG+ W+VG G N +I +D WIP  I  R+SS        +V +LIN     W  +L+  TF  + A + + +
Sbjct:  518 HIISDNILLAYELTHFLQRRRRGRVGYATVKLDMSKAYDRVEWKFLEDIMMKLGFRHDWVNLVMKCITTVKYQVKVNRSTTGTIIPQRGLRQGDPLSPYLFLLCAEGFSAMLHEAERSGSLKGIKICREAPSISHLLFADDSLVLMEASANNARVMNSILESYEACSRQVINKEKSAILFSKNTNPGQKEEVMNSLQISSEGFKGKYLGLPAYIGKAKAKTFQYLKDKEWNKIHGWKEKLLSKAGKEILIKAAAQAIPVYTMACFDITRTLSDDLSSMVNRFWWSQMDKENKIHWMSWEKLSKPKSEGGLGFRDLHSFNLAMLARQAWRLLQNPSSLCAQVLAAKYHPRSCILEARPKNGISYTWRSILKGVQLLKKGIIWRVGDGSNINIWSDPWIPRGITRRVSSHKGRHLVTRVNELINPVMNSWDTDLVYQTFNADDAETILKI 965          

HSP 2 Score: 65.4698 bits (158), Expect = 4.584e-122
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 2

Query:  416 ISEAATIFFQRLFTSNI--IGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664
            +SE    +F  LFTS +    +  H+L  I+   S ++N +L + +  +E+++A+  +   KAPGPDG PA+F+R +W I G  V
Sbjct:  357 LSEHVANYFFNLFTSTMGFSREREHVLRTIRPKVSNQMNAELCAEYTEEEVRSAMFSIGDLKAPGPDGMPAIFYRSFWQIVGDQV 441          

HSP 3 Score: 59.6918 bits (143), Expect = 4.584e-122
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1

Query:  706 EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            E +  T I LIPK+ +P ++ + RPISLC V+YK ++K ITN L+ ++   I   QSAF+ G +
Sbjct:  456 EGWNDTMIVLIPKTAHPTSMKDLRPISLCNVVYKVISKVITNRLKTILPDIISPNQSAFVPGHI 519          

HSP 4 Score: 48.1358 bits (113), Expect = 4.584e-122
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 1

Query:  250 FLKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLELRN 417
            FL+  L     +  M+  Q A V WL+ G KN  FFH F S R+RRN IS L+  +
Sbjct:  292 FLREKLERLEHQKDMFWRQRAHVKWLQSGDKNTTFFHAFASERRRRNTISKLKRED 347          

HSP 5 Score: 25.7942 bits (55), Expect = 4.584e-122
Identity = 15/40 (37.50%), Postives = 23/40 (57.50%), Query Frame = 2

Query: 2210 ILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKLLQTSDPR 2329
            IL+IP+  E  +DF+    +    FSV+SAY++   S  R
Sbjct:  962 ILKIPIL-ENTNDFIAWHFDKKCVFSVKSAYRVAADSAKR 1000          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: F4NCI4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 1.797e-113
Identity = 173/439 (39.41%), Postives = 260/439 (59.23%), Query Frame = 3

Query:  894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLF-ADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDF---KVADLINSAERKWKGELIVDTF 2192
            +I DNVL+AYE  H   +K+TG +      L + K    VE  FL+ +ML++GF   +  LVM C+T+  ++V +NG  +R F P+RGLRQGDPLSPFLF++C+EGLS L+R A  + ++ G+K   R   ISHLF ADD +LF  AT  +   + +IL  Y++ SGQ  N EKS + YS   + D  N +   L  +     EKY GLP+ +G  +K  F  +++R+  K +G  G+ LSQ  +++ IK+V QAIPTYAM CF +  S+   IE +   F+W +   +R + W  W+ +  PK+E G+G+RN   FN ALLAKQ  R++T PDSL+ RV K KYFP  +FL + +    S+  K+I + + ++ KG+C  +G G + +I  D W+P    + +++      D    KV +LI++   +W  EL+   F
Sbjct:  554 LITDNVLVAYECFHFLRKKKTGKKGYLGLKLDMSKAYDRVEWCFLENMMLKLGFPTRYTKLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQGDPLSPFLFVVCAEGLSTLLRDAEEKKVIHGVKIGHRVSPISHLFFADDSLLFIRATEEEVENVMDILSTYEAASGQKLNMEKSEMSYSRNLEPDKINTLQMKLAFKTVEGHEKYLGLPTFIGSSKKRVFQAIQDRVWKKLKGWKGKYLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIIDGIEKMCRNFFWGQKEEERRVAWVAWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKPDSLMARVIKGKYFPRSNFLEARVSPNMSFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWVPSLERYSIAATEGVSEDDGPQKVCELISND--RWNVELLNTLF 990          

HSP 2 Score: 69.3218 bits (168), Expect = 1.797e-113
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 2

Query:  413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEFQILTRNVNFSNKRTLRLFQK 745
            +++E    +F+ LF S    ++  +L  +K   + EL T+L +PF  +E+  AL  M   KAPGPDG  ALF++ +W   G+DV    L       N+   N+  + L  K
Sbjct:  393 DVTECFAHYFENLFQSGNNCEMDPILNIVKPQITDELGTQLDAPFRREEVSAALAQMHPNKAPGPDGMNALFYQHFWDTIGEDVTTKVLNMLNNVDNIGAVNQTHIVLIPK 503          

HSP 3 Score: 63.929 bits (154), Expect = 1.797e-113
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1

Query:  718 QTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            QT+I LIPK  +  + V+FRPISLC V+YK VAK + N ++ V+   I+++QS F+ GRL
Sbjct:  495 QTHIVLIPKKKHCESPVDFRPISLCNVLYKIVAKVLANRMKMVLPMVIHESQSGFVPGRL 554          

HSP 4 Score: 37.7354 bits (86), Expect = 1.797e-113
Identity = 18/50 (36.00%), Postives = 30/50 (60.00%), Query Frame = 1

Query:  283 KHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLELRN*RGCY 432
            + ++Y  Q +R +W+K G KN  FFH+  S R++RN +    +RN  G +
Sbjct:  340 REEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNNVR--RIRNEAGEW 387          

HSP 5 Score: 28.4906 bits (62), Expect = 1.797e-113
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 2

Query: 2201 SSRILRIPLAREPHDDFMVCSGEPSGEFSVRSAY 2302
            S+ I RIP+A +   D  +     +G+F+VRSAY
Sbjct:  995 STAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAY 1028          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q7XCU0_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g37170 PE=4 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 6.442e-112
Identity = 165/446 (37.00%), Postives = 248/446 (55.61%), Query Frame = 3

Query:  894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMTVE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKESFLN-LKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL 2225
            +I D+ L+AYE LH+  ++   N        ++     VE  +L   + ++GF++DW+  VM+C+++  YAV ING   +   P+RG+RQGDP+SP+LFL+C+EGLS L+      G L+GIK  R G  ISHL FADD I F +A +R    +K  L+ Y S SGQ  N  KS++F+       +K  +   L V      + Y G+P+ +G    +F   L ERI  +  G + R LS+   +  +K+V QAIP Y MSCF +  S+C +++   A  WW    GK+ +HW  W  +  PK   GMG R  + FN A+L +Q  RL+T+PDSL +RV K +YFPN  F  +      S+ W+++   + +LAKG+ W VG G    I +D WIPG     ++++    TD  V+ L+N   R W G+LI   F  ++A   + +
Sbjct:  518 LITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQI 963          

HSP 2 Score: 69.3218 bits (168), Expect = 6.442e-112
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 2

Query:  395 SPCWSLE-ISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKN 670
            S C S E I   A +F++ LF+S     +  +L  I       +N +L   +  +EIKTAL  M STKAPGPDGFPALF++ +W I  + + N
Sbjct:  350 SRCISQEGIKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICN 442          

HSP 3 Score: 52.7582 bits (125), Expect = 6.442e-112
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1

Query:  670 FLFGISNSDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            FL G    +  C+    + + LIPK  N   L  FRPISLC V+YK  +K + N L+  +   + + QSAF+ GRL
Sbjct:  447 FLLGEEIPEGLCD----SVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRL 518          

HSP 4 Score: 42.3578 bits (98), Expect = 6.442e-112
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 1

Query:  229 PVFVFIIFLKRLLYMEI----DKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405
            PV   +I  ++L+  ++    +K ++   Q +RV+WL+ G +N  FFH   SAR+R N I  L
Sbjct:  282 PVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKEL 344          

HSP 5 Score: 30.8018 bits (68), Expect = 6.442e-112
Identity = 15/39 (38.46%), Postives = 23/39 (58.97%), Query Frame = 2

Query: 2201 SSRILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKLLQT 2317
            +  IL+IP++R    DF     +  G +SVRSAY L ++
Sbjct:  957 AKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARS 995          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q9FW98_ORYSJ (Putative non-LTR retroelement reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0026L12.31 PE=4 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.709e-112
Identity = 165/446 (37.00%), Postives = 248/446 (55.61%), Query Frame = 3

Query:  894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMTVE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKESFLN-LKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL 2225
            +I D+ L+AYE LH+  ++   N        ++     VE  +L   + ++GF++DW+  VM+C+++  YAV ING   +   P+RG+RQGDP+SP+LFL+C+EGLS L+      G L+GIK  R G  ISHL FADD I F +A +R    +K  L+ Y S SGQ  N  KS++F+       +K  +   L V      + Y G+P+ +G    +F   L ERI  +  G + R LS+   +  +K+V QAIP Y MSCF +  S+C +++   A  WW    GK+ +HW  W  +  PK   GMG R  + FN A+L +Q  RL+T+PDSL +RV K +YFPN  F  +      S+ W+++   + +LAKG+ W VG G    I +D WIPG     ++++    TD  V+ L+N   R W G+LI   F  ++A   + +
Sbjct:  561 LITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQI 1006          

HSP 2 Score: 69.3218 bits (168), Expect = 6.709e-112
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 2

Query:  395 SPCWSLE-ISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKN 670
            S C S E I   A +F++ LF+S     +  +L  I       +N +L   +  +EIKTAL  M STKAPGPDGFPALF++ +W I  + + N
Sbjct:  393 SRCISQEGIKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICN 485          

HSP 3 Score: 52.7582 bits (125), Expect = 6.709e-112
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 1

Query:  670 FLFGISNSDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            FL G    +  C+    + + LIPK  N   L  FRPISLC V+YK  +K + N L+  +   + + QSAF+ GRL
Sbjct:  490 FLLGEEIPEGLCD----SVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRL 561          

HSP 4 Score: 42.3578 bits (98), Expect = 6.709e-112
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 1

Query:  229 PVFVFIIFLKRLLYMEI----DKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405
            PV   +I  ++L+  ++    +K ++   Q +RV+WL+ G +N  FFH   SAR+R N I  L
Sbjct:  325 PVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKEL 387          

HSP 5 Score: 30.8018 bits (68), Expect = 6.709e-112
Identity = 15/39 (38.46%), Postives = 23/39 (58.97%), Query Frame = 2

Query: 2201 SSRILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKLLQT 2317
            +  IL+IP++R    DF     +  G +SVRSAY L ++
Sbjct: 1000 AKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARS 1038          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: C5XL09_SORBI (Putative uncharacterized protein Sb03g001780 OS=Sorghum bicolor GN=Sb03g001780 PE=4 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.027e-110
Identity = 172/453 (37.97%), Postives = 264/453 (58.28%), Query Frame = 3

Query:  876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLF-ADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL 2225
             F    +I DNVLLAYEI+H     + G   +    L + K    VE  FL+ +M +MGF   WV L+MKC+TT +Y + +N S  +   P RGLRQGDPLSP+LF++C+EGLS +++ A  +G ++GIK CR   +++HLF ADD ++   A    A+ ++ IL  Y+  SGQ  N EKS++ +S  +    ++ +   L +    + EKY GLP  +G+ RK+ F  +K++I  + +G   +LLS+  K+I IK+V Q+IPTYAMSCF L   LC E+  I  ++WW +      IHW  W+ +   KE+ G+G R++  FN+A+L++Q  RL+TNPDSL  +V KA+YFP+ D L+     + SY W++I     +L +G+ W++G G N  I    WIP  I  +  +        +V +LIN    +W  +L+ D F  + A   + +
Sbjct:  120 AFVPGRLITDNVLLAYEIVHHLKSIKKGAGGLAAIKLDMSKAYDRVEWSFLENMMRKMGFDEKWVQLIMKCVTTVTYKIKVNDSYTQKIFPQRGLRQGDPLSPYLFIICAEGLSAMLQKAEQKGKIEGIKICRGAPKVNHLFFADDSLILMRARASDALELRRILDVYEKASGQVINKEKSSMMFSPNTGQHDRSLMRSNLSITDEASTEKYLGLPVNIGKSRKKPFEYIKKKIWSRIQGWQEKLLSKAGKEILIKAVAQSIPTYAMSCFDLTKGLCDELSSIIGRYWWSQQDKANKIHWISWEKLTQSKEKGGLGFRDLHLFNLAMLSRQAWRLLTNPDSLCGQVLKARYFPHSDILHCSPRPRISYTWRSILKGVALLKEGIIWRIGNGKNVKIWEHPWIPKGITRKPITPRGASLLTRVNELINPVTGEWDEQLVNDLFWPQDAEEILQI 572          

HSP 2 Score: 63.1586 bits (152), Expect = 1.027e-110
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1

Query:  667 KFLFGISNSDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            K +  + N     E +  T I LIPK+  P+ L + RPISLC V+YK ++K + N L+ ++   I  +QSAF+ GRL
Sbjct:   50 KEVLAVLNGGPIPEGWNDTIIVLIPKTNTPQMLKDLRPISLCNVLYKLISKVLANRLKKILPNIISNSQSAFVPGRL 126          

HSP 3 Score: 50.447 bits (119), Expect = 1.027e-110
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 2

Query:  521 LNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCL 679
            +N  L  PF   EI  AL  +   KAPG DG P++F++++W + G  VK   L
Sbjct:    1 MNKDLLLPFTGDEIWNALDNIGDLKAPGADGIPSIFYKKFWSVVGDQVKKEVL 53          

HSP 4 Score: 30.4166 bits (67), Expect = 1.027e-110
Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 2

Query: 2201 SSRILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL 2308
            +  IL+IP+  E  +D++    + +G FSV+SAYKL
Sbjct:  566 AEEILQIPI-DEHMEDWLAWHFDATGLFSVKSAYKL 600          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: B8AWH5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20882 PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 2.185e-110
Identity = 164/397 (41.31%), Postives = 226/397 (56.93%), Query Frame = 3

Query:  894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRR-KESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIP 2075
            +I DN +LA+E  HS  + R          L L K    V+ GFL+  + ++GF   WV  +M CITT  Y+V  NG+    F P+RGLRQGDPLSPFLFL  ++GLSLL+   + +G L  +K CR+   ISHL FADD +LF +A   +A  +KE++ +Y S +GQ  N  K ++ +   S    ++ I   L +  S+  ++Y G P+  GR  K  F +L+ERI  +       LLS G K++ IKSV+QAIP Y M  F L  S+C E+  +   FWW    GKR  HW  W+ +  PK   G+G R+   FN ALLA+Q  RLI NPDSL  RV KAKYFPN   +++  G   S VWK I     +L +G+ W++G G +  I  D W+P
Sbjct: 1248 MITDNAILAFECFHSIQKNRKPESAACAYKLDLSKAYDRVDWGFLEQSLYKLGFAHRWVRWIMVCITTVRYSVKFNGTLLSTFAPSRGLRQGDPLSPFLFLFIADGLSLLLEDKVAQGALSPVKICRQAPGISHLLFADDTLLFFKADNVQAQAVKEVISDYASATGQLINPAKCSIMFGESSPPQTRDAIRVTLQIANSSFEDRYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGENLLSSGGKEVLIKSVIQAIPVYVMGIFKLPESVCEELTKLTRNFWWGVEKGKRKTHWKSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEYGLSLLKEGIIWRIGNGKSVRIWRDPWLP 1644          

HSP 2 Score: 63.1586 bits (152), Expect = 2.185e-110
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1

Query:  706 EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            E    T I LIPK   P  L +FRPISLC VIYK V+K + N L+ ++   +   QSAF+LGR+
Sbjct: 1185 EGVNDTAIVLIPKIEQPMELRDFRPISLCNVIYKVVSKCLVNRLRPILDELVSPCQSAFVLGRM 1248          

HSP 3 Score: 59.6918 bits (143), Expect = 2.185e-110
Identity = 28/84 (33.33%), Postives = 49/84 (58.33%), Query Frame = 2

Query:  413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664
            ++ + AT +F+ +F+++ + D S +   I++  S  +N  L S F  +EI  A+  +   KA GPDGFPA F++R+W     D+
Sbjct: 1087 KLEDMATEYFKEVFSADPLLDQSKVTRLIQRKVSPAMNETLCSEFKEEEISNAMFQIGPLKALGPDGFPARFYQRHWGFMKNDI 1170          

HSP 4 Score: 38.5058 bits (88), Expect = 2.185e-110
Identity = 23/54 (42.59%), Postives = 30/54 (55.56%), Query Frame = 1

Query:  253 LKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLELR 414
            L  LLY E    +M   Q +RVNWLK G +N  FFH     R ++N I+ L+ R
Sbjct: 1028 LHELLYRE----EMLWLQRSRVNWLKEGDRNTRFFHSKAVWRAKKNRITKLKDR 1077          

HSP 5 Score: 31.5722 bits (70), Expect = 2.185e-110
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 2

Query: 2165 ERRVNC*YLWGRSSRILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL 2308
            E RVN  +L   +  I  I ++    DDF+    +  G+FSVRSAY L
Sbjct: 1675 ETRVNQVFLPVDAETICSIRVSSRQEDDFVAWHPDKHGKFSVRSAYGL 1722          

HSP 6 Score: 290.426 bits (742), Expect = 1.841e-105
Identity = 160/385 (41.56%), Postives = 219/385 (56.88%), Query Frame = 3

Query:  894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRR-KESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTG 2039
            +I DN +LA+E  HS  + R          L L K    V+ GFL+  + ++GF   WV  +M CITT  Y+V  NG+    F P+RGLRQGDPLSPFLFL  ++GLSLL+   + +G L  +K CR+   ISHL FADD +LF +A   +A  +KE++ +Y S +GQ  N  K ++ +   S    ++ I   L +  S   ++Y G P+  GR  K  F +L+ERI  +       LLS G K++ IKSV+QAIP Y M  F L  S+C E+  +   FWW    GKR  HW  W+ +  PK   G+G R+   FN ALLA+Q  RLI NPDSL  RV KAKYFPN   +++  G   S VWK I     +L +G+ W++G G
Sbjct:  550 MITDNAILAFECFHSIQKNRKPESAACAYKLDLSKAYDRVDWGFLEQSLYKLGFAHRWVRWIMVCITTVRYSVKFNGTLLSTFAPSRGLRQGDPLSPFLFLFIADGLSLLLEDKVAQGALSPVKICRQAPGISHLLFADDTLLFFKADNVQAQAVKEVISDYASATGQLINPAKCSIMFGESSPPQTRDAIRVTLQIANSGFEDRYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGENLLSSGGKEVLIKSVIQAIPVYVMGIFKLPESVCEELTKLTRNFWWGVEKGKRKTHWKSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEYGLSLLKEGIIWRIGNG 934          

HSP 7 Score: 63.929 bits (154), Expect = 1.841e-105
Identity = 29/84 (34.52%), Postives = 50/84 (59.52%), Query Frame = 2

Query:  413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664
            ++ + AT +F+ +F+++ + D S +   I++  S  +N  L S F  +EI  A+  +   KAPGPDGFPA F++R+W     D+
Sbjct:  389 KLEDMATEYFKEVFSADPLLDQSKVTRLIQRKVSPAMNETLCSEFKEEEISNAMFQIGPLKAPGPDGFPARFYQRHWGFMKNDI 472          

HSP 8 Score: 63.1586 bits (152), Expect = 1.841e-105
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1

Query:  706 EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            E    T I LIPK   P  L +FRPISLC VIYK V+K + N L+ ++   +   QSAF+LGR+
Sbjct:  487 EGVNDTAIVLIPKIEQPMELRDFRPISLCNVIYKVVSKCLVNRLRPILDELVSPCQSAFVLGRM 550          

HSP 9 Score: 38.5058 bits (88), Expect = 1.841e-105
Identity = 23/54 (42.59%), Postives = 30/54 (55.56%), Query Frame = 1

Query:  253 LKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISMLELR 414
            L  LLY E    +M   Q +RVNWLK G +N  FFH     R ++N I+ L+ R
Sbjct:  330 LHELLYRE----EMLWLQRSRVNWLKEGDRNTRFFHSKAVWRAKKNRITKLKDR 379          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: M5XHI9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019733mg PE=4 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 4.973e-108
Identity = 177/444 (39.86%), Postives = 248/444 (55.86%), Query Frame = 3

Query:  876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLF-ADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKES-FLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFT-MTDFKVADLI-NSAERKWKGELIVDTF 2192
             F    +I DN ++A+EI H   Q+R G +      L + K    VE  FL+ +ML MGF   WV +VM C+TT SY+  +NG   RI  PTRGLRQGDPLSP+LFL+C+EG + L+  A  +G L+GI  CR    +SHLF ADD  +F +AT                    CG         ++I   D ++ ++  LGV    +   Y GLP M+GR K   F  LKER+  K +G   + LS   K++ +K V Q+IP Y MSCF L   LC EIE + A+FWW +    R IHW +W+ +C  K E GMG R +  FN+A+LAKQG RL+ NP SL +R+ KAKYFP  +F  + LG++ S VWK+IW  + +L  G  +++G G +  I  D W+P    F + + P   M + KV++LI N    +W  + + + F
Sbjct:  503 AFVPGRLIIDNSIVAFEIAHFLKQRRRGRKGSLALKLDMSKAYDRVEWEFLEKMMLAMGFPILWVRMVMDCVTTVSYSFLVNGEPTRILYPTRGLRQGDPLSPYLFLLCAEGFTTLLSKAERQGQLQGIVICRGAPTVSHLFFADDSFVFAKAT-----------------DNNCG--------VANIHM-DTQSRLASVLGVPRVDSHATYLGLPMMLGRNKTVCFRYLKERVWKKLQGWREQTLSIAGKEVLLKVVAQSIPLYVMSCFLLPQGLCHEIEQMMARFWWGQQGENRKIHWMRWERLCKAKTEGGMGFRCLQAFNMAMLAKQGWRLVHNPHSLASRLLKAKYFPQTNFWEATLGSRPSCVWKSIWTARKVLEMGSRFQIGDGKSVRIWGDKWVPRPATFAVITSPLDGMENTKVSELICNEGSPQWDLQKLNNLF 920          

HSP 2 Score: 64.6994 bits (156), Expect = 4.973e-108
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 2

Query:  401 CWSLE---ISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDV 664
            CW      I+     +F  LF S+    +  +L  ++   + ++   L + F+ +EIK A+  M+ +KAPGPDG P LF+++YW I G DV
Sbjct:  341 CWRTSRQGITSIVIDYFGDLFRSSGSSMMEEILSALEPKVTADMQQVLIADFSYQEIKDAVFQMQPSKAPGPDGLPPLFYQKYWRIVGDDV 431          

HSP 3 Score: 63.1586 bits (152), Expect = 4.973e-108
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  691 SDQKCEFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            S++       T++ LIPK   PRT+   RPISLC V+Y+  AK + N ++ V+   I ++QSAF+ GRL
Sbjct:  441 SNEMLRQLNHTFVTLIPKVKEPRTMAQLRPISLCNVLYRIGAKTLANRMKFVMQSVISESQSAFVPGRL 509          

HSP 4 Score: 27.7202 bits (60), Expect = 4.973e-108
Identity = 13/33 (39.39%), Postives = 22/33 (66.67%), Query Frame = 2

Query: 2210 ILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL 2308
            I+RIPL+     D +V + +  G F+V+SAY++
Sbjct:  928 IVRIPLSIRAPPDRIVWNYDKHGLFTVKSAYRV 960          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: F4NCJ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 1.540e-106
Identity = 174/438 (39.73%), Postives = 258/438 (58.90%), Query Frame = 3

Query:  894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHLF-ADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRKES-FLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGE 2198
            +I DN L+A E+ HS   +    +      L + K    VE GFL+ ++L MGF   WV L+M+ +++ +Y+  INGS      P RGLRQGDPLSP+LF+M ++  S +++  + +  L G K  R G EISHLF ADD +LF  A  ++  +I +IL +Y+  SGQ  N+EKS V YS       K+E++  L +R     EKY G+PS+ GR K++ F +L +RI  K +G   +LLS+  K++ +KSV+QAIPTY M  +     +  +I+   A+FWW     +R IHW  W  MC+ K   GMG ++++ FN ALL +Q  RL   P SL+ RV KAKYFPN DFLN+ LG+ +SY W +IW++K +L +G+ W+VG G   ++ +D W+       L+S P     + V++LI+    +WK  L+     E
Sbjct:  549 LITDNALIAMEVFHSMKNRNRSRKGTIAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSVCGSVVPARGLRQGDPLSPYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLFTRANRQECTIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQSAMARFWWGSSDTQRKIHWKNWDSMCNLKCFGGMGFKDLTIFNDALLGRQAWRLTREPQSLLGRVMKAKYFPNCDFLNAPLGHSSSYSWSSIWSSKALLKEGVIWRVGNGSQINMWSDPWVLDEGGRFLTSTPHASIRW-VSELIDFDRMEWKTSLLESFLNE 985          

HSP 2 Score: 72.7886 bits (177), Expect = 1.540e-106
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 2

Query:  431 TIFFQRLFTSNIIGDLS--HLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNF 673
            T +F  +FTS+   DLS   ++  I+   + E N KL  PF+  EI  ALQ M   KAPGPDG   +F++R+WHI G DV +F
Sbjct:  392 TSYFSSIFTSSNPSDLSLEAVMSVIEPVVTEEHNLKLLEPFSKDEILAALQQMHPCKAPGPDGMHVIFYQRFWHIVGDDVTSF 474          

HSP 3 Score: 58.9214 bits (141), Expect = 1.540e-106
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1

Query:  721 TYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            T IALIPK  NP     FRPI+LC V+YK ++KAI   L+  +   I + QSAF+ GRL
Sbjct:  491 TNIALIPKVKNPTKAAEFRPIALCNVLYKLMSKAIVMRLKSFLPEIISENQSAFVPGRL 549          

HSP 4 Score: 33.113 bits (74), Expect = 1.540e-106
Identity = 19/53 (35.85%), Postives = 28/53 (52.83%), Query Frame = 1

Query:  247 IFLKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405
            + L++ L     KH+ Y    +RV  +K G KN  +FH   S RK+RN +  L
Sbjct:  321 VLLEKKLDELHAKHEAYWYLRSRVAEVKDGDKNTKYFHHKASQRKKRNFVKGL 373          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: B9FC76_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_15963 PE=4 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.171e-106
Identity = 160/447 (35.79%), Postives = 239/447 (53.47%), Query Frame = 3

Query:  894 II*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGRRK-ESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL 2225
            +I DN L+A+E  HS  +    ++D     L L K    V+ GFL   + ++GF   W   +M C+T+  Y+V +NG+    F PTRGLR+GDPL+P+LFL  ++GLS +++    E  ++ +K CR    +SHL FADD +LF +A   +A  IKE L  Y+ C+GQ  N ++ ++ +S++   + ++ I   L V  +   +K  GLP+  GR K E F  +KER   +    S R LS   K+  IKSV QA+PTY M  F +    C E E +   FWW    G++ +HW  W+ +  PK   G+G R++  FN ALLA+Q  RLI +PDSL  RV KAKY+PN    ++   + +S  WK I     +L KGL W++G G    I  + W+    N ++           V +LI +  + W   LI     EE A   + +
Sbjct:  797 MITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEKKTWNRLIYVRELIVTDTKTWNEPLIRHIIREEDADEILKI 1243          

HSP 2 Score: 68.1662 bits (165), Expect = 2.171e-106
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 2

Query:  413 EISEAATIFFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEF 685
            E+ E A  FF+ L+T +   +   LL   +   + E+N  L+ PF  +EI  AL  +   KAPGPDGFPA FF+R W +  +DV     EF
Sbjct:  636 ELGEIARSFFRDLYTKDESLNPGELLNMFEPKITDEMNGMLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREF 726          

HSP 3 Score: 59.6918 bits (143), Expect = 2.171e-106
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  706 EFFKQTYIALIPKSPNPRTLVNFRPISLCTVIYKFVAKAITNCLQDVIG*CIYQAQSAFILGRL 897
            E    T I +IPK+  P  + +FRP+SLC VIYK VAK + N L+ ++   I + QSAF+ GR+
Sbjct:  734 EGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQSAFVPGRM 797          

HSP 4 Score: 44.2838 bits (103), Expect = 2.171e-106
Identity = 24/74 (32.43%), Postives = 40/74 (54.05%), Query Frame = 1

Query:  184 EMTTSHLVEKDQS*LPVFVFIIFLKRLLYMEIDKHKMY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405
            E+    +  ++ S   V    IFL+ LL+ E    +++ +Q +R+ WLK G +N  +FH   S R R+N+I  L
Sbjct:  554 ELEEMRMRGREDSEPDVHRLKIFLQELLHRE----EIWWKQRSRITWLKEGDRNTRYFHLKASWRARKNLIKKL 623          

HSP 5 Score: 29.6462 bits (65), Expect = 2.171e-106
Identity = 14/36 (38.89%), Postives = 21/36 (58.33%), Query Frame = 2

Query: 2201 SSRILRIPLAREPHDDFMVCSGEPSGEFSVRSAYKL 2308
            +  IL+I + +   +DF     E +G FSVRS Y+L
Sbjct: 1237 ADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRL 1272          

BLAST of g.barbadense_cottongen_reftransV1_0092164 vs. ExPASy TrEMBL
Match: Q2QQV8_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g29700 PE=4 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.061e-104
Identity = 180/453 (39.74%), Postives = 255/453 (56.29%), Query Frame = 3

Query:  876 CFHSREII*DNVLLAYEILHSFCQKRTGNRDIWQ*NLILGKLMT-VE*GFLQAIMLQMGFTRDWVALVMKCITTTSYAVNINGSRARIF*PTRGLRQGDPLSPFLFLMCSEGLSLLMRLAMGEGLLKGIKTCRRGLEISHL-FADDCILFDEATTRKAMMIKEILKEYKSCSGQCGNFEKSTVFYSSISKGDMKNEISEFLGVRVSTNLEKYFGLPSMVGR-RKESFLNLKERISWKFEGRSGRLLSQGVKDIFIKSVLQAIPTYAMSCFFLRNSLCGEIEMIFAKFWWQKGYGKRGIHWCQWKHMCHPKEEYGMGLRNMSQFNIALLAKQG*RLITNPDSLVTRVFKAKYFPNEDFLNSCLGNKNSYVWKNIWATKGILAKGLCWKVGTGLNFSIANDAWIPGAINFRLSSVPFTMTDFKVADLINSAERKWKGELIVDTFGEEVAGSFVSL 2225
             F    +I DN+L+A E+ H    KR+G        L + K    VE  FL  ++L++GF  DWV L+MKC++T +Y + +NG  +  F P RGLRQGDPLSP+LFL+C+EG S L+     EG L GI+ C+    +SHL FADD ++   A   +A  ++ IL+ Y+ CSGQ  N +KS V +S  +    K  +   L ++  T  E+Y GLP  VGR R + F  LKERI  + +G   +LLS+  K+I IK+V QAIPT+AM CF L   LC +I  + AK+WW        +HW  W  +  PK   G+G R++  FN+A+LAKQG RLI +PDSL +RV +AKYFP  D       +  SY W++I     +L  G+ W+VG G   +I  D WIP   + +  +        KV +LI+     W  +L+  TF EE   +  S+
Sbjct:  795 AFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSI 1247          

HSP 2 Score: 67.781 bits (164), Expect = 2.061e-104
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 2

Query:  437 FFQRLFTSNIIGDLSHLLMGIKKSFSYELNTKLSSPFNAKEIKTALQGMESTKAPGPDGFPALFFRRYWHIAGKDVKNFCLEFQILTRNVNFSNKRTLRLFQKVQIPEH*LILDL 781
            FF++LFTSN   +   LL  + +  S  +N  L + F  +E+K AL  +   KAPGPDG PA F++  W + G+ V +  LE           N  T+ L  KV+ PE  LI DL
Sbjct:  648 FFKQLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGEKVTDEVLEVLRGGAIPEGWNDITIVLIPKVKKPE--LIKDL 760          

HSP 3 Score: 38.891 bits (89), Expect = 2.061e-104
Identity = 18/38 (47.37%), Postives = 23/38 (60.53%), Query Frame = 1

Query:  292 MY*EQMARVNWLKFGYKNFVFFHKFTSARKRRNIISML 405
            +Y +Q A  NWL  G +N  FFH   S R+RRN I+ L
Sbjct:  590 IYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKL 627