g.barbadense_cottongen_reftransV1_0092163, g.barbadense_cottongen_reftransV1_0092163 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092163 vs. ExPASy TrEMBL
Match: A0A078HPR1_BRANA (BnaCnng09300D protein OS=Brassica napus GN=BnaCnng09300D PE=4 SV=1) HSP 1 Score: 984.171 bits (2543), Expect = 0.000e+0 Identity = 569/937 (60.73%), Postives = 711/937 (75.88%), Query Frame = 1 Query: 682 TVPPTAYITSSTPFTNALNVSVNISFTEXXXXXXXXXXXXVNDCNLLVYGAGQVVPSSLTVVEPNLKYLLLVSISSASRYGRLVLVMDTNFCTDAAGNPFARSQNSSFYVHYDQRNVFVDLRAHVPEKLLQLRSETRTIQATNNYNNLKVYLYFSAPXXXXXXXXXXXXXXXKGTLLPITGENHGNRRFGFMVXXXXXXXXXXXXFDANSTISRQGTLVSPVAPVTFLYDSQRTAVRLSTTCRMRTREHNIPISIKFMKPVFGFNSSLISISGGRLQSFHEISRSIYAAAIQADDDVVSVSVPENVTGDVAGNKNLASNVLRVRHYTIPXXXXXXXXXXTAIFLLTCFTAGLLTMSTASLQSVGAFXXXXXXXXXDPTRILFRSACHIQIFALSRWLPVTLPVEYYEFARSMEWSIPYFSLPWETGHVQPVMMGSSPTGTSNSFLSRTYDRVISRSFQPNKIAAAVYGSPLTPVEYRSFFESQSIIPEAEYISDGLHSNGWRNFDRSMFWLAVIGGSXXXXXXXXXXXXKYKKRDSEKQGSYGALIFPRFEIFLVIVALPCICQAAAALIA------GGTPXXXXXXXXXXXXXXXXXXXXXXXXXXGITFGKLLQYKEVHREGQQFHWYQELIRVTLGPGKRGQWTWKNEANSVYLTMFGPLFEDLRGPPKYMVSQISGSN-LSRQGGPIIASDDETEDAEAPFIQKLFGILRIYYTMLESARRATLGILAGAYLNNNNTSSKTPIIILLCLTSFQLFFLVLKKPFIKKKVQLVEIISLSCEVAMFATCFVLLDKEF----STTIGIFMLTLFLIGFLAQMSAEGYALYEQTKQLDTSENKFFTGLKIASVGFLLYFVPQKLMKSFESTFPVFGLCMDTSTTG------LPCDRNSSSS--------ERAWPRQLREMAKASFSKD--GSKAPTDP 3411 TV PTA +T+S PFT+A NVSVNI+FTE C GGGGFRCSS N C+LLVYGAGQV+PSSLTV+E L+Y LLV +S ++YGRLVLVMD + C+D AGN F R+ S F+VH+D+RNVFV+LR HVPEKLL+L ++TRT+QATN+ L VYLYFS P+LNSS EIL LS + G LLPI G+ +GNRRF FMV N S AI+T++ D+NS SR GT SP AP+TFLYD++R V L+TT MRTR+H IP+ IKFMKPVFGFNSSL+SISGG L SF E+S SIY ++A+ +SV VPENVT DVAGNKNL SN+L+V HY++ V+SSVIS T IFL+TCF AGLLT+ST SL S+GAF RPS L SDPTR LFR+AC+IQ FAL+RWLPVTLPV+YYEF R ++W IPYF LPWET H + +M+ SSP +SF+S+TY + + + + A V+G PLT +EYR FFE+ ++ PEAE++ H WR+F+R MFW+A+IGGSL+LLH L ILK+KK +EK+ S+GA +FPRFE+FL+I++LP IC+AA +LI G + V+VGIL+L +VA LLL+LFLFLSVGITFGKLLQYKE+H+EGQ FHWYQELIRVTLGPGKRGQWTWK E S+YLT GP+FEDLRGPPKYM++QISGSN L ++ IIASDDETEDAEAP IQKLFGILRIYYT LE+ +R LGI+AGA+L+N +SKTP+++LLC+TSFQLFFLVLKKPFIKKKVQLVEIIS++C+V +FA+C VLL ++F +GI+M+ LFLIGF+ QM E Y+LY+QTK+LD F +GLK+ +G +PQKLMK S P L +S++ P +R +SS ++ W RQ+REMAKASF++D SK P+DP Sbjct: 118 TVSPTASVTASMPFTSAQNVSVNITFTEPCVGGGGFRCSSANACDLLVYGAGQVIPSSLTVLENYLRYSLLVGLSPDAQYGRLVLVMDKSVCSDTAGNSFKRALGSRFFVHFDRRNVFVNLRTHVPEKLLKLNNQTRTVQATNDNCKLNVYLYFSEPVLNSSAEILKLLSTNHGDLLPIGGKTNGNRRFAFMVTNTSRRAIVTVTLDSNSIRSRHGTPASPAAPLTFLYDTERPQVVLNTTSGMRTRKHTIPVWIKFMKPVFGFNSSLVSISGGYLDSFEELSGSIYIVYVKANTSTISVKVPENVTQDVAGNKNLESNILQVTHYSVSVMSSVISWISTYIFLVTCFVAGLLTLSTTSLYSLGAFPRPSPYLISDPTRNLFRTACYIQFFALTRWLPVTLPVDYYEFVRRIQWIIPYFPLPWETKHSEQIMVASSPFIGPHSFISKTYHN--NMNLETSTKAEPVFGLPLTAMEYRLFFETPNLKPEAEHVLGLPHPTVWRDFNRIMFWVAIIGGSLVLLHIILSLILKFKKAHTEKKRSFGAFVFPRFELFLLILSLPSICKAARSLIQGYFKQHGAAEANVIVGILVLCIVAILLLALFLFLSVGITFGKLLQYKEIHQEGQNFHWYQELIRVTLGPGKRGQWTWKKEDKSIYLTRLGPVFEDLRGPPKYMLTQISGSNSLKQRDDRIIASDDETEDAEAPCIQKLFGILRIYYTFLETVKRVCLGIIAGAFLDNE--TSKTPVVVLLCITSFQLFFLVLKKPFIKKKVQLVEIISIACQVGVFASCLVLLAEDFPEASGQKLGIYMVVLFLIGFITQMCNEWYSLYKQTKRLDQINRSFLSGLKMFVIGLAALILPQKLMK---SKIPAAQLEGRSSSSNGGIAFSTPENRYINSSGSRSSGSLDKPWLRQIREMAKASFTRDRSSSKVPSDP 1047 HSP 2 Score: 90.1225 bits (222), Expect = 7.714e-15 Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 2 Query: 377 CDDSQFTLKFFKAPHPFSHLNSAKFVFQVLGAANVTCSDCSITCKLDDGSASDCGGRKILYSGLQDGNHSFGVCVNGSQGAACTSYNWTV 646 C S+ ++KF K P S +SAKF FQ N TCS C CKLDD + DC R++ YS L DGNH+ VC N C YNWTV Sbjct: 27 CYGSELSVKFLKTPPTVSRFHSAKFSFQAFENGNRTCSSCKFQCKLDDQFSVDCHRRRVFYSKLLDGNHTLEVCANRMPRFGCNVYNWTV 116
BLAST of g.barbadense_cottongen_reftransV1_0092163 vs. ExPASy TrEMBL
Match: A0A0D3DRB5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 984.171 bits (2543), Expect = 0.000e+0 Identity = 569/937 (60.73%), Postives = 710/937 (75.77%), Query Frame = 1 Query: 682 TVPPTAYITSSTPFTNALNVSVNISFTEXXXXXXXXXXXXVNDCNLLVYGAGQVVPSSLTVVEPNLKYLLLVSISSASRYGRLVLVMDTNFCTDAAGNPFARSQNSSFYVHYDQRNVFVDLRAHVPEKLLQLRSETRTIQATNNYNNLKVYLYFSAPXXXXXXXXXXXXXXXKGTLLPITGENHGNRRFGFMVXXXXXXXXXXXXFDANSTISRQGTLVSPVAPVTFLYDSQRTAVRLSTTCRMRTREHNIPISIKFMKPVFGFNSSLISISGGRLQSFHEISRSIYAAAIQADDDVVSVSVPENVTGDVAGNKNLASNVLRVRHYTIPXXXXXXXXXXTAIFLLTCFTAGLLTMSTASLQSVGAFXXXXXXXXXDPTRILFRSACHIQIFALSRWLPVTLPVEYYEFARSMEWSIPYFSLPWETGHVQPVMMGSSPTGTSNSFLSRTYDRVISRSFQPNKIAAAVYGSPLTPVEYRSFFESQSIIPEAEYISDGLHSNGWRNFDRSMFWLAVIGGSXXXXXXXXXXXXKYKKRDSEKQGSYGALIFPRFEIFLVIVALPCICQAAAALIA------GGTPXXXXXXXXXXXXXXXXXXXXXXXXXXGITFGKLLQYKEVHREGQQFHWYQELIRVTLGPGKRGQWTWKNEANSVYLTMFGPLFEDLRGPPKYMVSQISGSN-LSRQGGPIIASDDETEDAEAPFIQKLFGILRIYYTMLESARRATLGILAGAYLNNNNTSSKTPIIILLCLTSFQLFFLVLKKPFIKKKVQLVEIISLSCEVAMFATCFVLLDKEF----STTIGIFMLTLFLIGFLAQMSAEGYALYEQTKQLDTSENKFFTGLKIASVGFLLYFVPQKLMKSFESTFPVFGLCMDTSTTG------LPCDRNSSSS--------ERAWPRQLREMAKASFSKD--GSKAPTDP 3411 TV PTA +T+S PFT+A NVSVNI+FTE C GGGGFRCSS N C+LLVYGAGQV+PSS TV+E L+Y LLV +S ++YGRLVLVMD + C+D AGN F R+ S F+VH+D+RNVFV+LR HVPEKLL+L ++TRT+QATN+ L VYLYFS P+LNSS EIL LS + G LLPI G+ +GNRRF FMV N S AI+T++ D+NS SR GT SP AP+TFLYD++R V L+TT MRTR+H IP+ IKFMKPVFGFNSSL+SISGG L SF E+S SIY ++A+ +SV VPENVT DVAGNKNL SN+L+V HY++ V+SSVIS T IFL+TCF AGLLT+ST SL S+GAF RPS L SDPTR LFR+AC+IQ FAL+RWLPVTLPV+YYEF R ++W IPYF LPWET H + +M+ SSP +SF+S+TY + + + + A V+G PLT +EYR FFE+ ++ PEAE++ H WR+F+R MFW+A+IGGSL+LLH L ILK+KK +EK+ S+GA +FPRFE+FL+I++LP IC+AA +LI G + V+VGIL+L +VA LLL+LFLFLSVGITFGKLLQYKE+H+EGQ FHWYQELIRVTLGPGKRGQWTWK E S+YLT GP+FEDLRGPPKYM++QISGSN L ++ IIASDDETEDAEAP IQKLFGILRIYYT LE+ +R LGI+AGA+L+N +SKTP+++LLC+TSFQLFFLVLKKPFIKKKVQLVEIIS++C+V +FA+C VLL ++F +GIFM+ LFLIGF+ QM E Y+LY+QTK+LD F +GLK+ +G +PQKLMK S P L +S++ P +R +SS ++ W RQ+REMAKASF++D SK P+DP Sbjct: 118 TVSPTASVTASMPFTSAQNVSVNITFTEPCVGGGGFRCSSANACDLLVYGAGQVIPSSFTVLENYLRYSLLVGLSPDAQYGRLVLVMDKSVCSDTAGNSFKRALGSRFFVHFDRRNVFVNLRTHVPEKLLKLNNQTRTVQATNDNGKLNVYLYFSEPVLNSSAEILKLLSTNHGDLLPIGGKTNGNRRFAFMVTNTSRRAIVTVTLDSNSIRSRHGTPASPAAPLTFLYDTERPQVVLNTTSGMRTRKHTIPVWIKFMKPVFGFNSSLVSISGGYLDSFEELSGSIYIVYVKANTSTISVKVPENVTQDVAGNKNLESNILQVTHYSVSVMSSVISWISTYIFLVTCFVAGLLTLSTTSLYSLGAFPRPSPYLISDPTRNLFRTACYIQFFALTRWLPVTLPVDYYEFVRRIQWIIPYFPLPWETKHSEQIMVASSPFIGPHSFISKTYHN--NMNLETSTKAEPVFGLPLTAMEYRLFFETPNLKPEAEHVLGLPHPTVWRDFNRIMFWVAIIGGSLVLLHIILSLILKFKKAHTEKKRSFGAFVFPRFELFLLILSLPSICKAARSLIQGYFKQHGAAEANVIVGILVLCIVAILLLALFLFLSVGITFGKLLQYKEIHQEGQNFHWYQELIRVTLGPGKRGQWTWKKEDKSIYLTRLGPVFEDLRGPPKYMLTQISGSNPLKQRDDRIIASDDETEDAEAPCIQKLFGILRIYYTFLETVKRVCLGIIAGAFLDNE--TSKTPVVVLLCITSFQLFFLVLKKPFIKKKVQLVEIISIACQVGVFASCLVLLAEDFPEASGQKLGIFMVVLFLIGFITQMCNEWYSLYKQTKRLDQINRSFLSGLKMFVIGLAALILPQKLMK---SKIPAAQLEGRSSSSNGGIAFSTPENRYINSSGSRSSGSLDKPWLRQIREMAKASFTRDRSSSKVPSDP 1047 HSP 2 Score: 90.1225 bits (222), Expect = 8.327e-15 Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 2 Query: 377 CDDSQFTLKFFKAPHPFSHLNSAKFVFQVLGAANVTCSDCSITCKLDDGSASDCGGRKILYSGLQDGNHSFGVCVNGSQGAACTSYNWTV 646 C S+ ++KF K P S +SAKF FQ N TCS C CKLDD + DC R++ YS L DGNH+ VC N C YNWTV Sbjct: 27 CYGSELSVKFLKTPPTVSRFHSAKFSFQAFENGNRTCSSCKFQCKLDDQFSVDCHRRRVFYSKLLDGNHTLEVCANRMPRFGCNVYNWTV 116
BLAST of g.barbadense_cottongen_reftransV1_0092163 vs. ExPASy TrEMBL
Match: A0A087GW66_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G103800 PE=4 SV=1) HSP 1 Score: 981.474 bits (2536), Expect = 0.000e+0 Identity = 566/942 (60.08%), Postives = 711/942 (75.48%), Query Frame = 1 Query: 667 FFIIYTVPPTAYITSSTPFTNALNVSVNISFTEXXXXXXXXXXXXVNDCNLLVYGAGQVVPSSLTVVEPNLKYLLLVSISSASRYGRLVLVMDTNFCTDAAGNPFARSQNSSFYVHYDQRNVFVDLRAHVPEKLLQLRSETRTIQATNNYNNLKVYLYFSAPXXXXXXXXXXXXXXXKGTLLPITGENHGNRRFGFMVXXXXXXXXXXXXFDANSTISRQGTLVSPVAPVTFLYDSQRTAVRLSTTCRMRTREHNIPISIKFMKPVFGFNSSLISISGGRLQSFHEISRSIYAAAIQADDDVVSVSVPENVTGDVAGNKNLASNVLRVRHYTIPXXXXXXXXXXTAIFLLTCFTAGLLTMSTASLQSVGAFXXXXXXXXXDPTRILFRSACHIQIFALSRWLPVTLPVEYYEFARSMEWSIPYFSLPWETGHVQPVMMGSSPTGTSNSFLSRTYDRVISRSFQPNKIAAAVYGSPLTPVEYRSFFESQSIIPEAEYISDGLHSNGWRNFDRSMFWLAVIGGSXXXXXXXXXXXXKYKKRDSEKQGSYGALIFPRFEIFLVIVALPCICQAAAALI------AGGTPXXXXXXXXXXXXXXXXXXXXXXXXXXGITFGKLLQYKEVHREGQQFHWYQELIRVTLGPGKRGQWTWKNEANSVYLTMFGPLFEDLRGPPKYMVSQISGSN-LSRQGGPIIASDDETEDAEAPFIQKLFGILRIYYTMLESARRATLGILAGAYLNNNNTSSKTPIIILLCLTSFQLFFLVLKKPFIKKKVQLVEIISLSCEVAMFATCFVLLDKEFSTT----IGIFMLTLFLIGFLAQMSAEGYALYEQTKQLDTSENKFFTGLKIASVGFLLYFVPQKLMKSFESTFPVFGLCMDTSTTGLPCDRNSSSS--------------ERAWPRQLREMAKASFSKDG--SKAPTDP 3411 ++ + TV PTA++T+S PFT+A N+SVNI+FTE C GGGGF CSSVN C+LLVYGAGQV+PSS TV++ L+Y LLV +S + YGR+VLVM+ + C+DAAGN F R+ S F+VH+D+R+VFVDLR+HVPE+LL+L ++TRT+QATN + L VYLYFS P+LNSS EILS L ++G LLPI G+ +GNRRF FMV N S AI+T++ D+N+ SR GT SP AP+TFLYD++R V LSTT MRTR+H IPI IKF+KPVFGFNSS +SI+GG L SF E+S SIY ++A+ +SV + ENVT DVAGNKNLASN+L V+HY++PVISSVIS IFL+T F AGLLT+ST SL S+GAF RPS L SDPTR LFR+ACHIQ FALSRWLPVTLPV+YYEFARS++W IPYF LPWE H + +M+ SSP +SF+S T + + N A AVYG PLT +EYR FFE+ ++ PEAE+I H WR+F R MFW+A++GGSL+LLH FL ILK+KK +EK+ S+GA +FPRFE+FL+I+ALP +C+AA +LI G + V+VGIL+L +VA LLL+LFLFLSVGITFGKLLQYKE+H+EGQ FHWYQELIRVTLGPGKRGQWTWK E NSVYLT GP+FEDLRGPPKYM++QISGSN L ++ IIASDDETEDAEAP IQKLFGILRIYYT LE+ +R LGI+AGA+L+N ++KTPI++LL +TSFQLFFLVLKKPFIKKKVQLVEIIS++C+V +FA+C +LL K+F +GIFM+ LFLIGF+ QM E YALY+QTK+LD F +GLK+ +G +PQKL+K + P L +S+ G ++ + ++ W RQ+REMAKASF++DG SK P+DP Sbjct: 110 YWTVDTVSPTAFVTASMPFTSAQNMSVNITFTEPCVGGGGFDCSSVNACDLLVYGAGQVIPSSFTVLDKYLRYSLLVGLSPNAHYGRIVLVMNKSVCSDAAGNKFKRALGSRFFVHFDRRDVFVDLRSHVPERLLELNNQTRTVQATNENDKLNVYLYFSEPVLNSSAEILSLLRTNQGDLLPIHGKTNGNRRFAFMVTNTSRRAIVTVTLDSNAIRSRHGTPASPTAPLTFLYDTERPHVVLSTTSGMRTRKHTIPIWIKFIKPVFGFNSSFVSITGGYLDSFEELSGSIYIVYVKANTSNISVKILENVTQDVAGNKNLASNILEVKHYSVPVISSVISWVSMYIFLVTSFVAGLLTLSTTSLYSLGAFPRPSPYLISDPTRNLFRTACHIQFFALSRWLPVTLPVDYYEFARSIQWIIPYFPLPWEAKHNEQIMVASSPFIGPHSFISTTPNNRLYPQTSSN--AEAVYGLPLTAMEYRLFFETPNLKPEAEHILGLPHHTVWRDFYRIMFWIAIVGGSLVLLHIFLSLILKFKKAHTEKKRSFGAFVFPRFELFLLILALPSVCKAARSLIQGYFKHQGAAEASVIVGILVLCIVALLLLALFLFLSVGITFGKLLQYKEIHQEGQNFHWYQELIRVTLGPGKRGQWTWKREENSVYLTRLGPVFEDLRGPPKYMLTQISGSNPLKQRDDRIIASDDETEDAEAPCIQKLFGILRIYYTFLETVKRVCLGIIAGAFLDNE--TAKTPIVVLLSITSFQLFFLVLKKPFIKKKVQLVEIISIACQVGVFASCLMLLAKDFEEACGKKLGIFMVILFLIGFITQMCNEWYALYKQTKRLDQINRSFVSGLKMFIIGLAALILPQKLVK---NKIPAAQLEGRSSSNGGGTPFAAADNRYGNSSGSRSSGSLDKPWLRQIREMAKASFTRDGSNSKVPSDP 1044 HSP 2 Score: 95.9005 bits (237), Expect = 1.395e-16 Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 2 Query: 374 NCDDSQFTLKFFKAPHPFSHLNSAKFVFQVLGAANVTCSDCSITCKLDDGSASDCGGRKILYSGLQDGNHSFGVCVNGSQGAACTSYNWTV 646 +C S+ ++KF K+P P S NSAKF FQ N TCS C CKLDD + DC GR + YS L DGNH+ VC N G C SY WTV Sbjct: 23 HCYGSELSVKFLKSPPPTSRFNSAKFSFQAFEDGNKTCSSCKFHCKLDDHFSVDCHGRVVSYSKLLDGNHTLEVCANRMHGFGCNSYYWTV 113
BLAST of g.barbadense_cottongen_reftransV1_0092163 vs. ExPASy TrEMBL
Match: A0A078IG89_BRANA (BnaA06g16800D protein OS=Brassica napus GN=BnaA06g16800D PE=4 SV=1) HSP 1 Score: 981.474 bits (2536), Expect = 0.000e+0 Identity = 568/937 (60.62%), Postives = 708/937 (75.56%), Query Frame = 1 Query: 682 TVPPTAYITSSTPFTNALNVSVNISFTEXXXXXXXXXXXXVNDCNLLVYGAGQVVPSSLTVVEPNLKYLLLVSISSASRYGRLVLVMDTNFCTDAAGNPFARSQNSSFYVHYDQRNVFVDLRAHVPEKLLQLRSETRTIQATNNYNNLKVYLYFSAPXXXXXXXXXXXXXXXKGTLLPITGENHGNRRFGFMVXXXXXXXXXXXXFDANSTISRQGTLVSPVAPVTFLYDSQRTAVRLSTTCRMRTREHNIPISIKFMKPVFGFNSSLISISGGRLQSFHEISRSIYAAAIQADDDVVSVSVPENVTGDVAGNKNLASNVLRVRHYTIPXXXXXXXXXXTAIFLLTCFTAGLLTMSTASLQSVGAFXXXXXXXXXDPTRILFRSACHIQIFALSRWLPVTLPVEYYEFARSMEWSIPYFSLPWETGHVQPVMMGSSPTGTSNSFLSRTYDRVISRSFQPNKIAAAVYGSPLTPVEYRSFFESQSIIPEAEYISDGLHSNGWRNFDRSMFWLAVIGGSXXXXXXXXXXXXKYKKRDSEKQGSYGALIFPRFEIFLVIVALPCICQAAAALI------AGGTPXXXXXXXXXXXXXXXXXXXXXXXXXXGITFGKLLQYKEVHREGQQFHWYQELIRVTLGPGKRGQWTWKNEANSVYLTMFGPLFEDLRGPPKYMVSQISGSN-LSRQGGPIIASDDETEDAEAPFIQKLFGILRIYYTMLESARRATLGILAGAYLNNNNTSSKTPIIILLCLTSFQLFFLVLKKPFIKKKVQLVEIISLSCEVAMFATCFVLLDKEF----STTIGIFMLTLFLIGFLAQMSAEGYALYEQTKQLDTSENKFFTGLKIASVGFLLYFVPQKLMKSFESTFPVFGLCMDTSTTG------LPCDRNSSSS--------ERAWPRQLREMAKASFSKD--GSKAPTDP 3411 TV PTA +T+S PFT+A NVSVNI+FTE C GGGGFRCSSVN C+LLVYGAGQV+PSS TV+E L+Y LLV +S ++YGR+VLVMD + C+D AGN F R+ S F+VH+D+RNVFV+LR HVPEKLL+L ++TRT+QATN+ + L VYLYFS P+LNSS EIL LS + G LLPI G+ +GNRRF FMV N S AI+T++ D+NS SR GT SP AP+TFLYD++R V L+TT MRTR+H IP+ IKFMKPVFGFNSSL+SISGG L SF E+S SIY ++A+ +SV +PENVT DVAGNKNL SN+L V HY++ V+SSVIS T IFL+TC AGLLT+ST SL S+GAF RPS L SDPTR LFR+ACHIQ FAL+RWLPVTLPV+YYEF R ++W IPYF LPWET H + +M+ SSP +SF+++TY + + + A V+G PLT +EYR FFE+ ++ PEAE++ H WR+F R MFW+A+IGGSL+LLH L ILK+KK +EK+ S+GA +FPRFE+FL+I+ALP IC+AA +LI G + V+VGIL+L +VA LLL+LFLFLSVGITFGKLLQYKE+H+EGQ FHWYQELIRVTLGPGKRGQWTWK E S+YLT GP+FEDLRGPPKYM++QISGSN L ++ IIASDDETEDAEAP IQKLFGILRIYYT LE+ +R LGI+AGA+L+N +SKTP+++LLC+TSFQLFFLVLKKPFIKKKVQLVEIIS++C+V +FA+C VLL ++F +GIFM+ LFLIGF+ QM E Y+LY+QTK+LD F +GLK+ +G +PQKLMK S P L +S++ P +R +SS ++ W RQ+REMAKASF++D SK P+DP Sbjct: 118 TVSPTASVTASMPFTSAQNVSVNITFTEPCVGGGGFRCSSVNACDLLVYGAGQVIPSSFTVLENYLRYSLLVGLSPDAQYGRIVLVMDKSVCSDTAGNSFKRALGSRFFVHFDRRNVFVNLRTHVPEKLLKLNNQTRTVQATNDNDKLNVYLYFSEPVLNSSAEILKLLSTNHGDLLPIDGKTNGNRRFAFMVTNTSRRAIVTVTLDSNSIRSRHGTPASPTAPLTFLYDTERPHVELNTTSGMRTRKHTIPVWIKFMKPVFGFNSSLVSISGGYLDSFEELSGSIYIVYVKANTSTISVKIPENVTQDVAGNKNLESNILEVTHYSVSVMSSVISWISTYIFLVTCCVAGLLTLSTTSLYSLGAFPRPSPYLISDPTRNLFRTACHIQFFALTRWLPVTLPVDYYEFVRRIQWIIPYFPLPWETKHSEQIMVASSPFIGPHSFIAKTYHN--NMNLETATKAEPVFGLPLTAMEYRLFFETPNLKPEAEHVLGLPHPTVWRDFYRIMFWIAIIGGSLVLLHILLSLILKFKKAHTEKKRSFGAFVFPRFELFLLILALPSICKAARSLIQGYFKHQGDAEANVIVGILVLCIVAILLLALFLFLSVGITFGKLLQYKEIHQEGQNFHWYQELIRVTLGPGKRGQWTWKKEDKSIYLTRLGPVFEDLRGPPKYMLTQISGSNPLKQRDDRIIASDDETEDAEAPCIQKLFGILRIYYTFLETVKRVCLGIIAGAFLDNE--TSKTPVVVLLCITSFQLFFLVLKKPFIKKKVQLVEIISIACQVGVFASCLVLLAEDFPEASGQKLGIFMVVLFLIGFITQMCNEWYSLYKQTKRLDQINRSFLSGLKMFIIGLAALILPQKLMK---SKIPAAQLEGRSSSSNGGIAFSTPENRYINSSGSRSSGSLDKPWLRQIREMAKASFTRDRSSSKVPSDP 1047 HSP 2 Score: 89.3521 bits (220), Expect = 1.263e-14 Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 2 Query: 377 CDDSQFTLKFFKAPHPFSHLNSAKFVFQVLGAANVTCSDCSITCKLDDGSASDCGGRKILYSGLQDGNHSFGVCVNGSQGAACTSYNWTV 646 C S+ ++KF K P S +SAKF FQ N TCS C CKLDD + DC R++ YS L DGNH+ VC N C YNWTV Sbjct: 27 CYGSELSVKFLKTPPTVSRFHSAKFSFQAFENGNTTCSSCKFQCKLDDHFSVDCHRRRVSYSKLLDGNHTLEVCANRKPRFGCNVYNWTV 116
BLAST of g.barbadense_cottongen_reftransV1_0092163 vs. ExPASy TrEMBL
Match: Q0WV86_ARATH (Putative uncharacterized protein At3g48200 OS=Arabidopsis thaliana GN=At3g48200 PE=1 SV=1) HSP 1 Score: 980.704 bits (2534), Expect = 0.000e+0 Identity = 562/933 (60.24%), Postives = 710/933 (76.10%), Query Frame = 1 Query: 682 TVPPTAYITSSTPFTNALNVSVNISFTEXXXXXXXXXXXXVNDCNLLVYGAGQVVPSSLTVVEPNLKYLLLVSISSASRYGRLVLVMDTNFCTDAAGNPFARSQNSSFYVHYDQRNVFVDLRAHVPEKLLQLRSETRTIQATNNYNNLKVYLYFSAPXXXXXXXXXXXXXXXKGTLLPITGENHGNRRFGFMVXXXXXXXXXXXXFDANSTISRQGTLVSPVAPVTFLYDSQRTAVRLSTTCRMRTREHNIPISIKFMKPVFGFNSSLISISGGRLQSFHEISRSIYAAAIQADDDVVSVSVPENVTGDVAGNKNLASNVLRVRHYTIPXXXXXXXXXXTAIFLLTCFTAGLLTMSTASLQSVGAFXXXXXXXXXDPTRILFRSACHIQIFALSRWLPVTLPVEYYEFARSMEWSIPYFSLPWETGHVQPVMMGSSPTGTSNSFLSRTYDRVISRSFQPNKIAAAVYGSPLTPVEYRSFFESQSIIPEAEYISDGLHSNGWRNFDRSMFWLAVIGGSXXXXXXXXXXXXKYKKRDSEKQGSYGALIFPRFEIFLVIVALPCICQAAAALI------AGGTPXXXXXXXXXXXXXXXXXXXXXXXXXXGITFGKLLQYKEVHREGQQFHWYQELIRVTLGPGKRGQWTWKNEANSVYLTMFGPLFEDLRGPPKYMVSQISGSN-LSRQGGPIIASDDETEDAEAPFIQKLFGILRIYYTMLESARRATLGILAGAYLNNNNTSSKTPIIILLCLTSFQLFFLVLKKPFIKKKVQLVEIISLSCEVAMFATCFVLLDKEF----STTIGIFMLTLFLIGFLAQMSAEGYALYEQTKQLDTSENKFFTGLKIASVGFLLYFVPQKLMKSFESTFPVFGLCMDTSTTGLPCD----RNSSSS------ERAWPRQLREMAKASFSKD--GSKAPTDP 3411 TV PTA++T+S PFT+A NVSVNI+FTE C G GGF CSSVN C+LLVYGAGQV+PSS TV++ L+Y LLV +S ++YGR+VLVM+ + C+D AGN F R+ S F+VH+D+RNV V+LR HVPEKLL+L ++TRT+QATN+ N L VYLYFS P+LNSS EIL L+ ++G LLPI G +GNRRF FMV N S AI+T++ D+NS SR GT SP AP+TFLYD++R V L+TT MRTR+H IP+ IKFMKPVFGFNSS +SISGG L SF E+S SIY ++A+ +S+ +PENVT DVAGNKNLASN+L+V+HY++P+ISSVIS T IFL+T F AGLLT+ST SL S+GAF RPS L SDPTR LFR+ACHIQ FAL+RWLPVTLPV+YYE R ++W IPYF LPWET + +M+ +SP +SF+S+T++ +I+ N A +V+G PLT +EYR FFE+ ++ PEAE++ HS WR+F+R MFW+A+IGGSL+LLH L ILK+KK SEK+ S+GA +FPRFE+FL+I+ALP IC+AA +LI G + V+VGIL+L VVA LLL+LFLFLSVGITFGKLLQYKE+H+EGQ FHWYQELIRVTLGPGKRGQWTWK E NSVYLT GP+FEDLRGPPKYM++QISGSN L +Q IIASDDE EDAEAP IQKLFGILRIYYT LE+ +R LGI+AGA+L+N ++KTPI++LL +TSFQLFFL+LKKPFIKKKVQLVEIIS++C+V +FA+C +LL K+F +GIFM+ LFLIGF+ M E Y+LY+QTK+LD F +GLK+ +G +PQK++K + PV L +S+ G RNSS S ++ W +Q+REMAK+SF++D SK P+DP Sbjct: 118 TVSPTAFVTASMPFTSAQNVSVNITFTEPCVGRGGFGCSSVNSCDLLVYGAGQVIPSSFTVLDQYLRYSLLVGLSPDAQYGRIVLVMNKSVCSDIAGNNFKRALGSRFFVHFDRRNVLVNLRTHVPEKLLKLNNQTRTVQATNDNNKLNVYLYFSEPVLNSSAEILRRLNTNQGDLLPIDGNTNGNRRFAFMVTNTSRRAIVTVTLDSNSIRSRHGTPASPTAPLTFLYDTERPHVILNTTSGMRTRKHTIPVWIKFMKPVFGFNSSFVSISGGYLDSFEELSGSIYIVYVKANTSTLSIKIPENVTQDVAGNKNLASNILKVKHYSVPMISSVISWVTTYIFLVTSFVAGLLTLSTTSLYSLGAFPRPSPYLISDPTRNLFRTACHIQFFALTRWLPVTLPVDYYELVRGIQWIIPYFPLPWETKIKEQIMVATSPYIGPHSFISKTHNNMINLKTSTN--AESVFGLPLTAMEYRLFFETSNLKPEAEHVLGLPHSTVWRDFNRIMFWIAIIGGSLVLLHIVLSLILKFKKAHSEKKRSFGAFVFPRFELFLLILALPSICKAARSLIQGYFKHQGAAEASVIVGILVLCVVAILLLALFLFLSVGITFGKLLQYKEIHQEGQTFHWYQELIRVTLGPGKRGQWTWKTE-NSVYLTRLGPVFEDLRGPPKYMLTQISGSNPLKQQDDRIIASDDENEDAEAPCIQKLFGILRIYYTFLETVKRVCLGIIAGAFLDNE--TAKTPIVVLLSITSFQLFFLLLKKPFIKKKVQLVEIISIACQVGVFASCLMLLAKDFPEASGKKLGIFMVVLFLIGFIMLMCNEWYSLYKQTKRLDQINRSFLSGLKMFIIGLAALILPQKMIK---NKIPVAQLEARSSSNGGTTPEFRYRNSSGSRSSGSLDKPWLKQIREMAKSSFTRDRSNSKVPSDP 1042 HSP 2 Score: 88.1965 bits (217), Expect = 2.945e-14 Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 2 Query: 377 CDDSQFTLKFFKAPHPFSHLNSAKFVFQVLGAANVTCSDCSITCKLDDGSASDCGGRKILYSGLQDGNHSFGVCVNGSQGAACTSYNWTV 646 C S+ ++KF KAP S SAKF F N TCS C CKLDD + DC RK+ YS L DG+H+ VC N G C YNWTV Sbjct: 27 CYGSELSVKFLKAPPTTSRFTSAKFSFLAFEDGNRTCSSCKFRCKLDDRISLDCHQRKVSYSKLLDGDHTLEVCANRMHGFGCNHYNWTV 116 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092163 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092163 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092163 ID=g.barbadense_cottongen_reftransV1_0092163; Name=g.barbadense_cottongen_reftransV1_0092163; organism=Gossypium barbadense; type=contig; length=3688bpback to top |