g.barbadense_cottongen_reftransV1_0092022, g.barbadense_cottongen_reftransV1_0092022 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 9.325e-49 Identity = 99/292 (33.90%), Postives = 160/292 (54.79%), Query Frame = 3 Query: 1998 NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQ-QGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDG--IFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLY-LTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 + VC+ KSLYGLKQA RQW +K + S + ++ D ++ K+ N ++LL+YVDD++I G D+ LI +LKG L+++F MKDLG + LG++I+R + ++L+Q KY ++ + AK +TPL + KL+ + EEK + K Y +G L+Y + TRPDI +AV +S+F+++P H ++RY++ + G + S L + D+D A +RKS TG+ SW+ K Q VA S+ E +Y + T E++W Sbjct: 951 HMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTV--EEKGN---MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1236 HSP 2 Score: 77.0258 bits (188), Expect = 9.325e-49 Identity = 47/119 (39.50%), Postives = 75/119 (63.03%), Query Frame = 2 Query: 1589 EPKSYSEAVQNPA*---IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 EP+S E + +P +KAM+EE+ +L+ N T+ +V LP K + CK+ K+K ++ R+KARLV KG+ QK+G+ + + FSPV K+ ++R +L+LA + Q+DV AFL Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 928 HSP 3 Score: 26.1794 bits (56), Expect = 9.325e-49 Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGF 1983 DL EE+YME P GF Sbjct: 931 DLEEEIYMEQPEGF 944 HSP 4 Score: 105.145 bits (261), Expect = 1.355e-41 Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = 2 Query: 788 GIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYA-TQTPYKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHES 1204 GI H+ TPQ NGV ER +R ++E +++ +K+ FWGE V+TACYLIN PS L + P + N + + SHLKVFGC +A + K K IP +F+GY + GY L++ K +RDV F ES Sbjct: 568 GIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRES 707 HSP 5 Score: 88.9669 bits (219), Expect = 1.355e-41 Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 3 Query: 357 SLWYARLGHVPSSKLHHVPFLQSFSF-DDNLIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKF 752 LW+ R+GH+ L + S+ + C C +Q R F S R DLV+ D+ GP I + G++YF+T +DD SR WVY+LK K + ++F LV+ + +K RSDNG ++ Sbjct: 423 DLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEY 555
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.245e-44 Identity = 87/227 (38.33%), Postives = 136/227 (59.91%), Query Frame = 3 Query: 2187 TGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPL--EQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 TG+ L+ L L+ F MKDLG + YFLG++I G+FL+Q KYA +++ ++G+ K +TPL + N+ ++ +Y D + ++ ++G L YLT TRPDI+YAV+ + Q M P ++ + RV+RY+K + G+ + +S + FCDSD A C +R+S TGFC LG ++ SW K+Q TV+RSS ET+YR++A TA+E+ W Sbjct: 13 TGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKY--------------PDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 1.706e-42 Identity = 89/296 (30.07%), Postives = 148/296 (50.00%), Query Frame = 3 Query: 1995 GNTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGG---NXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTH-TRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQ--LITFCDSDCASCPMSRKSVTGFCIKLGN-SLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 + VC+ K++YGLKQA+R W QAL F S D ++ +G N+ +LL D ++ TG D + K L + F+M DL E+K+F+G+ I +D I+L+Q Y ++++ + + +TPL + D+ T + LIG L+Y+ TRPD+T AV+ LS++ RV+RY+K + ++ + + + +I + DSD A + RKS TG+ K+ + +L W K+QN+VA SS E +Y ++ E +W Sbjct: 1028 SDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATG-DMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN------------TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALW 1310 HSP 2 Score: 68.5514 bits (166), Expect = 1.706e-42 Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 1634 KAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 +A+ E++ + NNTWT+ P K+ + ++ +KY R+KARLVA+G++QK + Y +TF+PVA++ + R +L+L + + QMDV AFL Sbjct: 908 EAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFL 1008 HSP 3 Score: 21.9422 bits (45), Expect = 1.706e-42 Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1 Query: 1945 LCEEVYMELPTG 1980 L EE+YM LP G Sbjct: 1012 LKEEIYMRLPQG 1023 HSP 4 Score: 97.4413 bits (241), Expect = 2.193e-34 Identity = 60/167 (35.93%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 788 GIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVL--HNKFPFEILYNIQPNLSHLKVFGCLCYATQTPYKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPIDSSVFFPPQLQILDSDF 1282 GI + HTPQ NGV+ER R + E A+ + +K+ FWGE V TA YLIN +PS L +K P+E+ +N +P L HL+VFG Y + KF K S+F+GY G+ L++ + F V RDV E+ A +VF + + +F Sbjct: 568 GISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNF 732 HSP 5 Score: 72.4034 bits (176), Expect = 2.193e-34 Identity = 46/157 (29.30%), Postives = 71/157 (45.22%), Query Frame = 3 Query: 315 HSIDCMHSVLDNNTSLWYARLGHVPSSKLHHVPFLQSFS---FDDNLIHSCAVCPL---ARQTRQPFSN--SVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKFFNS 761 +SI+ H NN LW+ R GH+ KL + FS +NL SC +C +Q R PF T +P +VH D+ GP T YF+ VD + YL+K+KS+ + F+ + F+ + Y DNG ++ ++ Sbjct: 405 YSINAKHK---NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSN 558
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 5.184e-23 Identity = 86/296 (29.05%), Postives = 142/296 (47.97%), Query Frame = 3 Query: 1980 FLQSRG-NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDG-IFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHT-RPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKK-QNTVARSSAETKYRSMAATASEI 2855 F+ R + V +YGLKQA WN + L F + + ++ L+ + + + +YVDDL++ + +K L + + MKDLG++ FLGL I + +G I L+ + Y + ++S I K TPL + L E L+D T YQ ++G+LL+ +T RPDI+Y V LS+F++ P+ HL +A RV+RY+ + + S S L +CD+ + S G+ L + +W KK + + S E +Y + + T EI Sbjct: 24 FVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLF-----------ETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVMEI 308
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy Swiss-Prot
Match: M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana GN=AtMg00240 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.885e-16 Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 2508 LYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFC 2744 +YLT TRPD+T+AV+ LSQF + + + +V+ Y+K + GQG+ S++S QL F DSD ASCP +R+SVTGFC Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.323e-15 Identity = 43/105 (40.95%), Postives = 70/105 (66.67%), Query Frame = 2 Query: 1571 STSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALA 1885 +T+ EPKS A+++P +AM+EE+ L N TW +VP P+ ++ + CK+ K K + ++R KARLVAKG+ Q+EG+ +V+T+SPV + T+R +L +A Sbjct: 21 TTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: Q0PY40_SOLLC (Putative polyprotein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 0.000e+0 Identity = 179/411 (43.55%), Postives = 249/411 (60.58%), Query Frame = 2 Query: 752 LQFNCSSLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYATQTPYKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPF-------------HFAPIDSSVFFPPQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFPHDPLCCFSRIFKPPNWLHDXXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFLQVI 1945 L C LF LGI+HQS C HTPQQNGV ERKHRH+L +A+A++FQ+ + ++FWG C++ A YL+N LPSS NK +E+LY QP+L HLKV GCLCYAT P DKFS + ++ +GYS QKGY+L ++ + VNRDV FHE +FPF H +P++ + + +I +S +H S + + + S + S + S + SR K P W+ D+ + SS++ +++++ Y L + FLS S EPK++ +A Q+ I+AM++EI LE NNTW VV LP ++ K+ K+KYKA+ E+ERFKARLVAKGYSQ+EG+ Y DTFSPVAK+VTVR V+ALA W L+QMDV+NAFLQ + Sbjct: 633 LNSQCKDLFNHLGILHQSSCPHTPQQNGVVERKHRHILNIARAIRFQAHLPIRFWGYCIRAAVYLMNRLPSSANSNKSAYELLYCKQPSLFHLKVIGCLCYATTVPKGDKFSARASAAILLGYSELQKGYVLLDIHSTKVHVNRDVVFHEEIFPFAKERSQLDPLGDVHGSPLEKAENQTIEAEIDNS--VHAETSMVHEDSQGNETESYSENQMSRPSTTEEVSENTHAIPSHVDSYVRRSSRNIKEPMWMKDYTITKGHSSTKHPMASYLNYEKLKPECRSFLSKLSEYTEPKNFKQASQDERWIQAMKQEIKALEENNTWQVVELPEGMHAVGSKWIYKVKYKANGEIERFKARLVAKGYSQQEGLDYHDTFSPVAKMVTVRCVIALAVSKGWTLYQMDVYNAFLQGV 1041 HSP 2 Score: 298.516 bits (763), Expect = 0.000e+0 Identity = 161/294 (54.76%), Postives = 211/294 (71.77%), Query Frame = 3 Query: 1980 FLQSRGNTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 F + N VC+ KSLYGLKQASRQWNLKLT+ L + F QS +DYSLFT ++G ++V++L+YVDDL+ITG++ LI E+K L++ FK+KDLGELK+FLG+E+LR GI LNQRKY LELIA++G+ GAK AT P+E N +LT++E+DQ G +D +L D T YQRLIG+L+Y+T TRPDI+YAV LSQFMQ PK SH+ A RV+RY+K S GQG+ L S + + +CDSD A+CP +R+S+TG+ IK G SSAE +YRSMA+ SEI W Sbjct: 1054 FAKPGENKVCKLLKSLYGLKQASRQWNLKLTKVLQATGFSQSAHDYSLFTLKRGEDIVIVLVYVDDLLITGSNMQLIAEVKACLHKQFKLKDLGELKFFLGIEVLRSSGGIILNQRKYILELIAEAGLTGAKPATAPMESNLRLTSVEHDQANGY--NKDDVLHDITSYQRLIGKLIYVTITRPDISYAVQTLSQFMQSPKKSHIEAATRVIRYLKGSVGQGVWLHSEPTNIITCWCDSDWAACPNTRRSITGYVIKFG---------------ESSAEAEYRSMASAVSEITW 1330 HSP 3 Score: 149.443 bits (376), Expect = 0.000e+0 Identity = 78/195 (40.00%), Postives = 115/195 (58.97%), Query Frame = 3 Query: 192 LFDGKMKGIGKESRGLYXXXXXXXXXXXXXXXXXXXXXXNIHSIDCMHSVLD-----NNTSLWYARLGHVPSSKLHHVPFLQSFSFDDNLIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKFFNS 761 L G++KGIG+E GLY F ++ + I C ++D +T +W+ RLGH PS ++ + + S S D + C VCPLA+QTR F S TR++ FD+VH+D+WGPY+ T + YFLTIVDD+SR WV+LL+ KSE ++ +K F ++ QF++ +K RSDNG++F NS Sbjct: 455 LCSGRVKGIGREEGGLYSFKANFSSKQK-------------EEIKCAQEIVDAGVVRQDTEIWHRRLGH-PSQQILKLLKIDSSSKGDGIPAHCPVCPLAKQTRLTFPVSTTRTSMMFDVVHMDLWGPYKTPTLNRKHYFLTIVDDYSRFVWVHLLQLKSETIVAIKNFFSMINTQFNSHVKVVRSDNGTEFLNS 635 HSP 4 Score: 41.2022 bits (95), Expect = 0.000e+0 Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 2 Query: 32 NIAGISHCLSVSEDSPSWILDTGATDHMISDSQSLISPIS-CASGSGFVHLPNG 190 N+AGI+ CL + WI+D+GAT H+I++ Q L + S VHLP G Sbjct: 376 NMAGITTCLMTNPAIQDWIVDSGATHHIIANKQLLTTRHELTKSQMNQVHLPTG 429 HSP 5 Score: 24.6386 bits (52), Expect = 0.000e+0 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1945 LCEEVYMELPTGF 1983 L EEVYM++P GF Sbjct: 1042 LGEEVYMKMPEGF 1054
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: M1ANG9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010287 PE=4 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 6.877e-160 Identity = 169/406 (41.63%), Postives = 233/406 (57.39%), Query Frame = 2 Query: 761 NCSSLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYAT-QTPYKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPIDSSVFFPPQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGC--SSFPHDPLCCF-SRIFKPPNWLHDXXX---XXXXXXXXXXXXNHIFYSH-------LPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 ++ + GIIH+ C +TPQQNGV ERKH++LLE A+AL FQSK+ LK+WGECV A Y+IN LP+S + K P+E+LYN +P SH++ FGCLCY T P++DKF + P +F+GY KGY + +L TK ++RDV F ES+FPF+ P SS FP L + F+ I + + + ++P+ T P SS P + C SR K P +LHD++ T + N +F H L +Q + + S+ EP SY EA NPA AM +E L +N+TW +V LP K +I C++ K+K KA +ERFKARLV KGY+Q+ G+ Y +TFSPV K+ TVR +LA A W +FQ+DV NAFL Sbjct: 98 ETTAFLKNKGIIHEKTCPYTPQQNGVVERKHKYLLETARALLFQSKLPLKYWGECVLCATYIINRLPTSHMKGKCPYELLYNTKPVYSHMRTFGCLCYPTLPKPHRDKFQARTTPHIFLGYPFGSKGYKVLSLATKKIHISRDVVFKESIFPFNVLPDVSS--FPSVLHSV--PFIDIVHPNIESQLVQHVENTVIDASDTLPHTSPNHVTDSPTTIHSSNPEPTVSCRPSRPHKLPTYLHDYVLPRPMTKPLQNSNISLNSVFSKHQHIPPEVLALESQSLVRNVSNDDEPSSYGEAAMNPAWQHAMTQEFEALHTNHTWDLVNLPNGKKAIGCRWVYKVKPKADGTIERFKARLVVKGYTQEAGVDYTETFSPVIKMTTVRALLATAVKKGWNIFQLDVNNAFL 499 HSP 2 Score: 246.899 bits (629), Expect = 6.877e-160 Identity = 132/290 (45.52%), Postives = 188/290 (64.83%), Query Frame = 3 Query: 1992 RGNTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 + VC+ KSLYGLKQASRQW KLT+AL S + S DYSLF K+ + + + +YVDD+++TG + I+ELK L+ FK+KDLG L YFLG+E+L +DG+ ++QRK+ L+L+ D + S +PL+ KL A KE + L + Y++L+G+L +LT+TR DI+Y+V LSQFMQ P+ HL A ++RY+K P GI +S S + +CDSD A+CP +RKSV+G+ + LGNS SWK KKQ T++ SSAE +YR++ A E+VW Sbjct: 519 KPGMVCKLNKSLYGLKQASRQWYAKLTEALYSKGYTHSLNDYSLFHKKSENSSIFVAVYVDDVILTGTSDSEIEELKIFLHDKFKIKDLGRLHYFLGMEVLYKEDGLIISQRKFVLDLLKDYKVASMSSCNSPLDPAVKLHA-----------KEGAPLSEPLFYRKLVGKLNFLTNTRMDISYSVQHLSQFMQDPREPHLQAAFHILRYLKADPTLGIFMSQDQSYNVKAYCDSDWAACPDTRKSVSGYIVLLGNSPLSWKSKKQETISLSSAEAEYRALRKVAGELVW 797 HSP 3 Score: 103.605 bits (257), Expect = 6.877e-160 Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 3 Query: 471 LARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKFFNS 761 +ARQ R PF +S S + F L+H+D+WGPY + TH +RYF+T+VDD+SR TW LL KS L +K F+ +++ QF+ ++ R+DNG +F N+ Sbjct: 1 MARQERLPFPHSTHTSTRIFQLLHIDLWGPYHMVTHDNYRYFITLVDDYSRCTWTQLLTCKSNTLEVIKNFLSMIQTQFNTCVQTIRTDNGLEFVNT 97 HSP 4 Score: 24.6386 bits (52), Expect = 6.877e-160 Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGFCSQE 1995 DL EEVYME+P G + Sbjct: 502 DLHEEVYMEVPPGLVVHK 519
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: M4CW55_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra008452 PE=4 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 3.615e-155 Identity = 162/391 (41.43%), Postives = 229/391 (58.57%), Query Frame = 2 Query: 770 SLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYATQTPY-KDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPF-HFAPIDSSVFFPPQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFPHDPLCCFSRIFKPPNWLHDXXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 +L+ + GII C TP+QN V ERKH+HLL VA+AL FQS V L WG+C+ TA +LIN PS V+ NK PFE+L + P+ S+LK FGCLCYA+ +P + KF + VF+GY S KGY L ++++ + F++R+V FHE++FPF H P F PQL DSD +VP ++ DP R+ KPP L D+ +++ S ++ ISN + Y L +F+++ +S+ EP+++ +A + AM EI+ LE NNTW V LP K ++ CK+ K+K A +ER+KARLVAKGY+Q+EG+ YV+TFSPVAKL TV+++LA+A W L Q+DV NAFL Sbjct: 476 ALYKEKGIIPYHSCPETPEQNSVVERKHQHLLNVARALLFQSGVPLSHWGDCILTAVFLINRTPSQVIGNKTPFEMLTSKLPDYSNLKTFGCLCYASTSPKGRHKFQDRARACVFLGYPSGYKGYKLLDIQSHAVFISRNVVFHENLFPFLHSTPTAGQAEFFPQLHT-DSD----------------------------------TPDTVPAPTTGT-DPQPSTRRVSKPPRHLQDYDCNSINSCTEHPISNFLSYDGLSDPYLIFINAVNSIPEPRNFDQACKLKEWCDAMGIEITALEENNTWLVCSLPEGKRAVGCKWVFKVKLNADGTLERYKARLVAKGYTQQEGIDYVETFSPVAKLSTVKLLLAVAAAKNWSLSQLDVSNAFL 830 HSP 2 Score: 226.868 bits (577), Expect = 3.615e-155 Identity = 130/288 (45.14%), Postives = 192/288 (66.67%), Query Frame = 3 Query: 1998 NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 N VC+ +KSLYGLKQASRQW LK ++ L+ F+ S D++LF K G + +L+YVDD++I + + + LK L+ +FK++DLG L+YFLGLEI R GI + QRKY L+L+ D+G+ G K ++ P++ + KL+ + D LL + +Y+RLIG+LLYLT TRPDIT+AVH L QF P+ HL A +V+ Y+K + G G+ S++S +L F D+D SCP +R+SV+G C+ +G SL +WK KQ+TV+ SSAE++YR+M+ E++W Sbjct: 857 NAVCKLKKSLYGLKQASRQWFLKFSETLLQMGFKVSSGDHTLFLKHSGKAYMAVLVYVDDIIIASSCDKATELLKAALHASFKLRDLGTLRYFLGLEIARSSAGISVCQRKYILDLLTDTGLLGCKPSSIPMDPSVKLSTEDGD-----------LLPNAEMYRRLIGKLLYLTFTRPDITFAVHKLCQFTSSPRAPHLQAAYKVLHYLKGTVGLGLFYSANSDMKLSAFADADWGSCPDTRQSVSGLCVFVGPSLIAWKSNKQDTVSSSSAESEYRAMSEAVKEMIW 1133 HSP 3 Score: 113.235 bits (282), Expect = 3.615e-155 Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 3 Query: 351 NTSLWYARLGHVPSSKLHHVPFLQSFSFDDN--LIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKF 752 + S+W+ R GH ++ + + FS N L+H C VC A+Q + + + PF+L+H+D+WGP+ T G++YFLTIVDDH+R+TWVYLLK KS+ L +FI +V+ Q+ A IK R+DN + Sbjct: 338 DASVWHQRFGHSSFERIERLSDVLGFSKTKNKGLMH-CDVCHRAKQKKLSYHLHPKLCSMPFELLHIDVWGPFSEPTQEGYKYFLTIVDDHTRVTWVYLLKLKSDVLTIFPEFIRMVETQYDAHIKSVRADNAPEL 472 HSP 4 Score: 28.1054 bits (61), Expect = 3.615e-155 Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGFCSQEGTLF 2007 DL EE+YM LP G+ ++G F Sbjct: 833 DLDEEIYMSLPPGYSPRQGESF 854
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: A5B7R0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010420 PE=4 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 9.598e-155 Identity = 136/288 (47.22%), Postives = 185/288 (64.24%), Query Frame = 3 Query: 1998 NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 N VC KSLYGLKQASRQW K + A++ F QS D+SLF K G + L+YVDD++I N++ I +LK LN+ FK+KDLG++KYFLGLEI + GI ++QRKY L+L++D G G K+A+TP+E N KL+ D+G+ L D ++Y+RL SQF+ PK+ HL+ A R++RY+K +PG G+ S+S +L+ + DSD A CP SR+SVTGFC+ LGNSL SWK KKQ+ V+RSSAE +YR+MA T+ EI W Sbjct: 936 NXVCLLHKSLYGLKQASRQWFSKFSTAIMGLGFSQSPSDHSLFIKNVDGLFIAXLVYVDDVIIASNNQGAIADLKSELNKLFKLKDLGDVKYFLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSM---DEGVD--------LPDVSLYRRL---------------------SQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNSELRLMAYTDSDWARCPDSRRSVTGFCVFLGNSLVSWKSKKQHIVSRSSAEAEYRAMANTSCEITW 1191 HSP 2 Score: 228.024 bits (580), Expect = 9.598e-155 Identity = 155/401 (38.65%), Postives = 221/401 (55.11%), Query Frame = 2 Query: 767 SSLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCY-ATQTPYKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPIDSSVFFPPQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFP---HDPLCCFSRIFKPPNWLHDX--XXXXXXXXXXXXXXNH-----IFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 S+ + LG+IH CV TPQQN V ERKH+H+L VA+AL F S + + +W +C+ TA YLIN PS L+NK PFEIL++ P+ SHL+VFGCLCY +T + KFSP+ +VF+GY KGY L ++ET R + + P I S +F L + +D N +S+ +P S P P +R+ K P++L D+ + + ++H + Y L +LF S S + EP S+++A + P AM+ E+ LE N T ++V LP+ K + CK+ K K+K +ER+KARLVAKGY+Q+EG+ YVDTFSPVAKLVTV+++LA+A + W L Q+DV NAFL Sbjct: 547 SNFYHSLGVIHYRSCVETPQQNSVVERKHQHILNVARALLFXSSLPVCYWSDCILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSHLRVFGCLCYVSTLKANRTKFSPRAKAAVFLGYPFGFKGYKLLDIET------RSISISRNTNPCSSPDISSDLFHDRVLPCIAAD-------------------------------NDQSSSVLPRVVSQPPLQVAPSSRPTRVSKQPSYLKDYHCSLINSVAHVETHSTSHPIQHFLSYDKLSPSYKLFSLSVSIISEPSSFAKAAEIPEWRAAMDCELEALEENKTXSIVSLPVGKHPVGCKWVYKXKHKXDGTIERYKARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLSQLDVNNAFL 910 HSP 3 Score: 128.257 bits (321), Expect = 9.598e-155 Identity = 64/138 (46.38%), Postives = 88/138 (63.77%), Query Frame = 3 Query: 348 NNTSLWYARLGHVPSSKLHHVPFLQSF--SFDDNLIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKFF 755 N SLW++RLGH S+L + + F SFD + C VCPLA+Q P+ + R + FDL+HLDIWGP+ + + G+++FLTIVDD+SR+TWVY+LK+KSE Y+ F VK QF +K RSDN + F Sbjct: 411 NILSLWHSRLGHPSFSRLKGLQSVLDFDSSFD---LTPCNVCPLAKQRCLPYISLNKRCSSTFDLLHLDIWGPFSVGSVEGYKFFLTIVDDYSRVTWVYMLKNKSEVQKYIPDFFAFVKKQFGKEVKAIRSDNAPELF 545 HSP 4 Score: 26.5646 bits (57), Expect = 9.598e-155 Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGF 1983 DL EEVYM+LP G+ Sbjct: 913 DLNEEVYMKLPPGY 926
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: Q9FJV3_ARATH (Retroelement pol polyprotein-like OS=Arabidopsis thaliana PE=4 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.523e-153 Identity = 150/393 (38.17%), Postives = 218/393 (55.47%), Query Frame = 2 Query: 770 SLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYATQTP-YKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPIDSSVFFPPQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFPHDPLCCFSRIFKPPNWLHD---XXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 +L+ GII C TPQQN V ERKH+H+L VA+AL F++ + L+FWG+C+ +A +LIN LP+ +L NK PFE+L+ P+ + LKVFGCLCY + +P + KF+P+ VF+GY S KGY L +LET + ++R V F+E+VFPF D ++ ++D +I S+ P R +PP +L D V ++ ++ +I Y+ L ++ + + EP +Y++A + + AME EI LES NTW+V LP K I CK+ K+K A +ERFKARLVAKGY+Q+EG+ Y DTFSPVAK+ TV+ +L++A I W L Q+D+ NAFL Sbjct: 720 ALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALMFEANMPLEFWGDCILSAVFLINRLPTPLLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHKFAPRARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPF----TDKTIIPRDVFDLVDPVHENIENPP----------------------------------STSESAPKVSSKRESRPPGYLQDYFCNAVPDVTKDVRYPLNAYINYTQLSEEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEIDALESTNTWSVCSLPQGKKPIGCKWVFKVKLNADGSLERFKARLVAKGYTQREGLDYYDTFSPVAKMTTVKTLLSVAAIKEWSLHQLDISNAFL 1074 HSP 2 Score: 236.884 bits (603), Expect = 1.523e-153 Identity = 139/288 (48.26%), Postives = 194/288 (67.36%), Query Frame = 3 Query: 1998 NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 N V + QKSLYGLKQASRQW LK + L F++S D++LFT+ G + LL+YVDD+VI GN++ I+ELK L + FK++DLG +KYFLGLEI R K+GI + QRKY +EL+ D+G+ G + +T P+E + KL+ + ++ ++ + VY+RL+G+L+YLT TRPDITYA++ L QF PK SHL A +VV Y+K + G G+ SS S L + D+D SC SR+S +G C+ LG+SL SWK KKQN + SSAE++YR+MA + EI W Sbjct: 1101 NPVLKLQKSLYGLKQASRQWYLKFSSTLKKLGFKKSHADHTLFTRISGKAYIALLVYVDDIVIAGNNDENIEELKKDLAKAFKLRDLGPMKYFLGLEIARTKEGISVCQRKYTMELLEDTGLLGCRPSTIPMEPSLKLS----------QHNDEHVIDNPEVYRRLVGKLMYLTITRPDITYAINRLCQFSSSPKNSHLKAAQKVVHYLKGTIGLGLFYSSKSDLCLKAYTDADWGSCVDSRRSTSGICMFLGDSLISWKSKKQNMASSSSAESEYRAMAMGSREIAW 1378 HSP 3 Score: 114.005 bits (284), Expect = 1.523e-153 Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = 3 Query: 351 NTSLWYARLGHVPSSK---LHHVPFLQSFSFDDNLIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKF 752 +++LW++RLGH K LH V L + +D L+H C++C A+Q F + S FDL+H+D WGP+ T G++YFLTIVDD+SR TWVYL+K K++ L F+ +V+ Q+ +K RSDN + Sbjct: 582 DSALWHSRLGHPSYEKNDVLHDVLGLPKRNKED-LVH-CSICQKAKQKHLSFPSKNNMSENKFDLIHIDTWGPFATPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTLVKAVRSDNAPEL 716 HSP 4 Score: 27.335 bits (59), Expect = 1.523e-153 Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGFCSQEG 1998 DL EE+YM LP G+ ++G Sbjct: 1077 DLKEEIYMTLPPGYSMKQG 1095
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: Q9XII7_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g16000 PE=4 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 6.648e-153 Identity = 151/397 (38.04%), Postives = 226/397 (56.93%), Query Frame = 2 Query: 767 SSLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYATQTP-YKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPIDSSV--FFPPQLQI---LDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPG-CSSFPHDPLCCFSRIFKPPNWLHDXXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 +S + + GI+ C TP+QN V ERKH+H+L VA+AL FQS+V L WG+CV TA +LIN PS +L NK P+EIL P L+ FGCLCY++ +P + KF P+ +F+GY S KGY L +LE+ + F++R+V+FHE VFP P S F P + + + SD H + +S+P S P P R+ KPP L+D+ +T+ S ++ IS+ I YS + + ++++ + + P +Y+EA +A++ EI +E NTW + LP K ++ CK+ +K+ A +ER+KARLVAKGY+QKEG+ Y DTFSPVAK+ T++++L ++ +W L Q+DV NAFL Sbjct: 691 TSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTH-------------------------------SPSSLPSQISDLP--PQISSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFL 1054 HSP 2 Score: 234.958 bits (598), Expect = 6.648e-153 Identity = 133/289 (46.02%), Postives = 190/289 (65.74%), Query Frame = 3 Query: 1995 GNTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 N V R ++S+YGLKQASRQW K + +L+S F+++ D++LF K G V++L+YVDD+VI E +L L+Q FK++DLG+LKYFLGLE+ R GI + QRKYALEL+ +G+ K + P+ N K+ + + L++D Y+R++G+L+YLT TRPDIT+AV+ L QF P+ +HL A RV++YIK + GQG+ S+SS L F DSD ASC SR+S T F + +G+SL SW+ KKQ+TV+RSSAE +YR++A E+VW Sbjct: 1080 SNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKM-----------RKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVW 1357 HSP 3 Score: 115.161 bits (287), Expect = 6.648e-153 Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 3 Query: 330 MHSVLDNNTSLWYARLGHVPSSKLHHV-PFLQSFSFDDNLIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKF 752 +++V+D S+W+ RLGH +L + L + + C VC LA+Q + F S + FDL+H+D+WGP+ + T G++YFLTIVDDHSR TW+YLLK KSE L FI V+NQ+ +K RSDN + Sbjct: 549 VNAVVD--ISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPEL 688 HSP 4 Score: 24.2534 bits (51), Expect = 6.648e-153 Identity = 7/22 (31.82%), Postives = 16/22 (72.73%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGFCSQEGTLF 2007 +L EE++M++P G+ ++G + Sbjct: 1057 ELEEEIFMKIPEGYAERKGIVL 1078
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: O04543_ARATH (F20P5.25 protein OS=Arabidopsis thaliana GN=F20P5.25 PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 8.610e-152 Identity = 157/402 (39.05%), Postives = 220/402 (54.73%), Query Frame = 2 Query: 755 QFNCSSLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYATQTPY-KDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPI--DSSVFFP-----PQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFPHDPLCCFSRIFKPPNWLHDXXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 + N + + GI+ C TPQQN V ERKH+H+L VA++L FQS + + +WG+C+ TA YLIN LP+ +L +K PFE+L P H+KVFGCLCYA+ +P + KFSP+ F+GY S KGY L +LET S V+R V FHE +FPF + + + FFP P +Q SD ++ S S S+ S ++ P + R K P +L D+ +V SS+ I + Y + FL+ EP +Y+EA + AM E LE +TW V LP K I C++ KIKY + VER+KARLVA+GY+QKEG+ Y +TFSPVAKL +V+++L +A F+ L Q+D+ NAFL Sbjct: 536 ELNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVN----------------------PSDSSSSVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFL 915 HSP 2 Score: 228.024 bits (580), Expect = 8.610e-152 Identity = 127/288 (44.10%), Postives = 188/288 (65.28%), Query Frame = 3 Query: 1998 NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 N VCR +KSLYGLKQASRQW LK + L+ F QS D++ F K G + +L+Y+DD++I N++ + LK + FK++DLGELKYFLGLEI+R GI ++QRKYAL+L+ ++G G K ++ P++ + +D G E Y+RLIGRL+YL TRPDIT+AV+ L+QF P+ +HL ++++YIK + GQG+ S++S QL + ++D SC SR+S +G+C+ LG+SL WK +KQ+ V++SSAE +YRS++ E+VW Sbjct: 942 NAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSM---VFAHDSGGDFVEVGP--------YRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVW 1218 HSP 3 Score: 132.109 bits (331), Expect = 8.610e-152 Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 3 Query: 360 LWYARLGHVPSSKLHHVPFLQSFSFD-DNLIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKF 752 LW+ RLGH KL + L SF +N C VC +++Q PF + +S++PFDL+H+D WGP+ + TH G+RYFLTIVDD+SR TWVYLL++KS+ L + F+ +V+NQF IK RSDN + Sbjct: 406 LWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPEL 537
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: A0A0B2NXW1_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_034513 PE=4 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 1.708e-151 Identity = 146/286 (51.05%), Postives = 195/286 (68.18%), Query Frame = 3 Query: 2004 VCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 VCR Q+SLY LKQASRQW KL+ L+S F++S D+SLF + G + LL+YVDD+++TGN E I+++ +L+Q FK+KDLG LKYFLG+EI R GI L QRKY L++++DSG+ G + TP++ +TKL A G + S Y+RLIGRL+YLT+TRPDITYAV LSQ+M +P H A R++RY+K + G GI LS++ + QL F DSD A C SRKS TGF I LG+S SW+ KKQ+TV+RSS+E +YR+MA T E+ W Sbjct: 946 VCRLQRSLYELKQASRQWFTKLSGLLISLGFEKSHSDHSLFLRFTGSIITALLVYVDDIILTGNSESEIQDVIKLLDQAFKIKDLGNLKYFLGMEIARSSSGIHLCQRKYTLDILSDSGMLGCQPNVTPMDYSTKLQATA---GTPLSTEASS------SYRRLIGRLIYLTNTRPDITYAVQQLSQYMSNPTSVHQQAAYRILRYLKGTSGSGIFLSATGTPQLRAFSDSDWAGCQDSRKSTTGFVIYLGSSPVSWQSKKQSTVSRSSSEAEYRAMATTTCELQW 1222 HSP 2 Score: 227.254 bits (578), Expect = 1.708e-151 Identity = 155/425 (36.47%), Postives = 224/425 (52.71%), Query Frame = 2 Query: 755 QFNCSSLFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYA-TQTPYKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHE-----------------SVFP--FHFAPIDSSVFFPPQ-----------LQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFPHDPLCCFSRIFKPPNWLHDXXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 +F S + GI+HQ+ CV TP+QNG+ ERKH+HLL V +AL FQ+ + FW + A YL+N +P+ LHN P+E L+ P +SHL+VFGCLCYA T + K P+ P +F+G+ ++ KGY+++NL S +R+V F+E ++ P F+ +P D + PPQ LQ+ +D S + ++ + + S S T V S +P + +SR+ SH H + +SST VEP SY+EA Q IKAME E+ L+SNNTW + LP K++I C++ KIK++A +ER+KARLVAKGY+Q EG+ Y+ FSPVAKL VR++LA+ +W L Q+DV NAFL Sbjct: 530 EFLMPSFYASKGIMHQTTCVETPEQNGIAERKHQHLLNVTRALLFQANLPSNFWCYALLHATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYASTLKANRKKLDPRAHPCIFIGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFSQIPETQSSHPESSTILPKSFNISPHDPIIEKPPQPVIQETTDHTPLQLTSTDESAFSQRTKHEPRRSTRPKHAPTYLQDYHHSLSSHDTKVSTSSRYPLSSVLSYSRL-----------------------------SHTHKHFVMSISST---VEPSSYAEASQYDCWIKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGSIERYKARLVAKGYTQMEGLDYLYAFSPVAKLTIVRLLLAMVAFNQWHLRQLDVNNAFL 922 HSP 3 Score: 107.071 bits (266), Expect = 1.708e-151 Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 3 Query: 360 LWYARLGHVPSSKLH----HVPFLQSFSFDDNLIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKFF 755 LW+ R+GH+ + +L H P L++ D + C C A+ + PFS+S + ++ F L+H+DIWGP + GH+YFLTIVDDHSR TWV+L+ K+E + FI V+ Q++ IK RSDNG +F Sbjct: 402 LWHFRMGHLSTERLQCMKPHYPILRN---DKTFV--CNTCHYAKHKKLPFSSSTSHASHIFYLLHVDIWGPCSKPSMHGHKYFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIASVETQYNKKIKKIRSDNGYEFL 532 HSP 4 Score: 22.3274 bits (46), Expect = 1.708e-151 Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGF 1983 +L EEVYM++P G Sbjct: 925 ELDEEVYMQVPPGL 938
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: Q9FX79_ARATH (Putative retroelement polyprotein OS=Arabidopsis thaliana GN=F19K19.5 PE=4 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 5.084e-150 Identity = 157/392 (40.05%), Postives = 227/392 (57.91%), Query Frame = 2 Query: 773 LFTDLGIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYATQTP-YKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPID---SSVFFPPQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFPHDPLCCFSRIFKPPNWLHDXXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 L+ GI+ C TP+QN V ERKH+H+L VA+AL FQS++ L +WG+C+ TA ++IN PS V+ NK FE+L P+ +HLK FGCLCYA+ +P + KF + F+GY S KGY L +LE+ + F++R+V F+E +FPF P + SSVFF P + + +D S + S+ P + SR+ +PP +L D+ ++V SS+ IS + YS L +F+++ + + EP +Y++A Q AM EI+ LE N TW V LP+ K ++ CK+ KIK A +ER+KARLVAKGY+Q EG+ YVDTFSPVAKL TV++++A+A W L Q+D+ NAFL Sbjct: 669 LYRRKGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEMLTKKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGYKGYKLLDLESHTIFISRNVVFYEDLFPFKTKPAENEESSVFF-PHIYVDRND----------------------------SHPSQPLPVQETSASNVPAEKQN--SRVSRPPAYLKDYHCNSVTSSTDHPISEVLSYSSLSDPYMIFINAVNKIPEPHTYAQARQIKEWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAKGYTQTEGLDYVDTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFL 1029 HSP 2 Score: 230.72 bits (587), Expect = 5.084e-150 Identity = 133/288 (46.18%), Postives = 195/288 (67.71%), Query Frame = 3 Query: 1998 NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSLLQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 N VCR +KSLYGLKQASRQW LK +++L + F QS D++LFT++ + + +L+YVDD++I + + + L+ L ++ K++DLG L+YFLGLEI R DGI + QRKY LEL+A++G+ G KS++ P+E N KL+ QE+ E L+ D Y++L+G+L+YLT TRPDITYAVH L QF P+V HL +++ Y+K + GQG+ S++ +L F DSD +SC SRK TG+C+ LG SL +WK KKQ ++ SSAE +Y++M+ E++W Sbjct: 1056 NAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYVDDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLELLAETGLLGCKSSSVPMEPNQKLS---------QEDGE--LIDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQFTSAPRVPHLKAVYKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTGYCMFLGTSLVAWKSKKQEVISMSSAEAEYKAMSMAVREMMW 1332 HSP 3 Score: 103.219 bits (256), Expect = 5.084e-150 Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 3 Query: 444 LIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNGSKF 752 L+H C +C A+Q + + + PFDL+H+D+WGP+ T G+ YFLTIVDDH+R+TWVYL+K+KS+ L FI +V+ Q+ +K RSDN + Sbjct: 563 LLH-CDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYHYFLTIVDDHTRVTWVYLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSDNAPEL 664 HSP 4 Score: 26.1794 bits (56), Expect = 5.084e-150 Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 1945 LCEEVYMELPTGFCSQEGTLF 2007 L EE+YM LP G+ ++G F Sbjct: 1033 LDEEIYMTLPPGYSPRQGDSF 1053
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Match: O23588_ARATH (Retrotransposon like protein OS=Arabidopsis thaliana GN=dl4760c PE=4 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 9.823e-137 Identity = 161/394 (40.86%), Postives = 219/394 (55.58%), Query Frame = 2 Query: 776 FTDL----GIIHQSLCVHTPQQNGVTERKHRHLLEVAKALKFQSKVLLKFWGECVKTACYLIN*LPSSVLHNKFPFEILYNIQPNLSHLKVFGCLCYATQTP-YKDKFSPKVIPSVFMGYSSTQKGYILFNLETKSFFVNRDVKFHESVFPFHFAPIDSSV--FFPPQLQILDSDFLHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGCSSFPHDPLCCFSRIFKPPNWLHDXXXXXXXXXXXXXXXNHIFYSHLPTHNQLFLSSTSSLVEPKSYSEAVQNPA*IKAMEEEISTLESNNTWTVVPLPLXXXXXXXXXXXXXXYKASSEVERFKARLVAKGYSQKEGMGYVDTFSPVAKLVTVRVVLALAFIFRWPLFQMDVFNAFL 1936 FTDL GI+ C TP+QN V ERKH+H+L VA+AL FQS + L+FWG+CV TA +LIN LP+ VL+NK P+E L NI P LK FGCLCY++ +P + KF P+ VF+GY KGY L ++ET + ++R V FHE +FPF + I + FFP +D L + +S P S+ + P DPL R KPP L DF Y++ F+++ ++ V P+ YSEA A AM+EEI + NTW+VV LP K +I CK+ IK+ A +ER+KARLVAKGY+Q+EG+ Y +TFSPVAKL +VR++L LA +W + Q+D+ NAFL Sbjct: 676 FTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFISSTIKDDIKDFFPLLQFPARTDDLPLEQTSIIDTHPHQDVSSSKAL--------------------VPFDPLS--KRQKKPPKHLQDFHC----------------YNNTTEPFHAFINNITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFL 1031 HSP 2 Score: 224.557 bits (571), Expect = 9.823e-137 Identity = 124/289 (42.91%), Postives = 182/289 (62.98%), Query Frame = 3 Query: 1998 NTVCRFQKSLYGLKQASRQWNLKLTQALVSARFQQSKYDYSLFTKQQGGNXXXXXXXXXXXXXTGNDEVLIKELKGILNQNFKMKDLGELKYFLGLEILRFKDGIFLNQRKYALELIADSGIGGAKSATTPLEQNTKLTAIEYDQGIGQEEKEDSL-LQDKTVYQRLIGRLLYLTHTRPDITYAVHCLSQFMQHPKVSHLNTALRVVRYIKNSPGQGIXXXXXXXCQLITFCDSDCASCPMSRKSVTGFCIKLGNSLTSWKVKKQNTVARSSAETKYRSMAATASEIVW 2861 + +CR KS+YGLKQASRQW LKL+ L FQ+S D++LF K G ++ +L+YVDD++I N + + + L FK++DLG KYFLG+EI R + GI + QRKY LEL++ +G G+K ++ PL+ + KL KED + L D T Y++L+G+L+YL TRPDI YAV+ L QF P HL+ +V+RY+K + GQG+ S+ L + DSD SC SR+ V +C+ +G+ L SWK KKQ+TV+ S+AE ++R+M+ E++W Sbjct: 1058 HAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLN------------KEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIW 1334 HSP 3 Score: 72.7886 bits (177), Expect = 9.823e-137 Identity = 45/133 (33.83%), Postives = 64/133 (48.12%), Query Frame = 3 Query: 363 WYARLGHVPSSK---LHHVPFLQSFSFDDN---LIHSCAVCPLARQTRQPFSNSVTRSAKPFDLVHLDIWGPYRISTHSGHRYFLTIVDDHSRMTWVYLLKHKSEALLYLKQFIHLVKNQFSAFIKYFRSDNG 743 W+ RLGH SK L V L+ + + H C VC L++Q F + + FDLVH+D WGP+ + T+ TW+YLLK+KS+ L FI++V Q+ +K RSDN Sbjct: 553 WHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDLVHIDTWGPFSVPTNDA--------------TWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSDNA 671 HSP 4 Score: 24.6386 bits (52), Expect = 9.823e-137 Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 1 Query: 1942 DLCEEVYMELPTGFCSQEG 1998 DL EE+YM++P G+ G Sbjct: 1034 DLDEEIYMKIPPGYADLVG 1052 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 6
BLAST of g.barbadense_cottongen_reftransV1_0092022 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092022 ID=g.barbadense_cottongen_reftransV1_0092022; Name=g.barbadense_cottongen_reftransV1_0092022; organism=Gossypium barbadense; type=contig; length=2863bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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