g.barbadense_cottongen_reftransV1_0092018, g.barbadense_cottongen_reftransV1_0092018 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A0B0PTY4_GOSAR (Protein GDAP2 OS=Gossypium arboreum GN=F383_16358 PE=4 SV=1) HSP 1 Score: 347.436 bits (890), Expect = 3.162e-111 Identity = 166/173 (95.95%), Postives = 169/173 (97.69%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + APVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS Sbjct: 75 IVGKYFPAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 247
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A0D2RUA0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G1334001 PE=4 SV=1) HSP 1 Score: 343.199 bits (879), Expect = 1.065e-110 Identity = 165/169 (97.63%), Postives = 168/169 (99.41%), Query Frame = -3 Query: 276 MYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 782 MY APVVSGERLKRYIYHKICSELPEGPFC+VYMHSTVQKEDNSPGVTILRWIYEELPPEIK+RLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYI+RLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS Sbjct: 1 MYAAPVVSGERLKRYIYHKICSELPEGPFCIVYMHSTVQKEDNSPGVTILRWIYEELPPEIKDRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYISRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 169
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A0D2Q0G2_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_006G1334001 PE=4 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 1.955e-107 Identity = 162/165 (98.18%), Postives = 165/165 (100.00%), Query Frame = -3 Query: 276 PVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 770 PVVSGERLKRYIYHKICSELPEGPFC+VYMHSTVQKEDNSPGVTILRWIYEELPPEIK+RLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYI+RLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS Sbjct: 1 PVVSGERLKRYIYHKICSELPEGPFCIVYMHSTVQKEDNSPGVTILRWIYEELPPEIKDRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYISRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 165
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A061EW74_THECC (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 2 OS=Theobroma cacao GN=TCM_024410 PE=4 SV=1) HSP 1 Score: 326.25 bits (835), Expect = 3.872e-103 Identity = 153/178 (85.96%), Postives = 167/178 (93.82%), Query Frame = -3 Query: 276 LAFY*LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 809 L F+ L + +APV+SGERLK+YI+HKICSELPEGPFC+VYMHSTVQKEDNSPGVTILRWIYEELP EIK+RLQV+YFIHPGL SRLVFATLGR FLSGGLYWKIKY++RLQYLW+DIKKGEVEIPEFVQNHD+VLEHRPLTDYGIEPDPLHLTEVP+ AYSLGRYEERL SREFMS Sbjct: 57 LHFFRLQGSDKSAPVISGERLKKYIFHKICSELPEGPFCIVYMHSTVQKEDNSPGVTILRWIYEELPSEIKDRLQVVYFIHPGLCSRLVFATLGRLFLSGGLYWKIKYVSRLQYLWDDIKKGEVEIPEFVQNHDNVLEHRPLTDYGIEPDPLHLTEVPSAAYSLGRYEERLASREFMS 234
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A061EVD9_THECC (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 OS=Theobroma cacao GN=TCM_024410 PE=4 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 1.183e-101 Identity = 150/173 (86.71%), Postives = 164/173 (94.80%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + APV+SGERLK+YI+HKICSELPEGPFC+VYMHSTVQKEDNSPGVTILRWIYEELP EIK+RLQV+YFIHPGL SRLVFATLGR FLSGGLYWKIKY++RLQYLW+DIKKGEVEIPEFVQNHD+VLEHRPLTDYGIEPDPLHLTEVP+ AYSLGRYEERL SREFMS Sbjct: 75 IVGKYFPAPVISGERLKKYIFHKICSELPEGPFCIVYMHSTVQKEDNSPGVTILRWIYEELPSEIKDRLQVVYFIHPGLCSRLVFATLGRLFLSGGLYWKIKYVSRLQYLWDDIKKGEVEIPEFVQNHDNVLEHRPLTDYGIEPDPLHLTEVPSAAYSLGRYEERLASREFMS 247
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: D7TIK6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05700 PE=4 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 4.835e-97 Identity = 143/166 (86.14%), Postives = 159/166 (95.78%), Query Frame = -3 Query: 276 APVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 773 APVVSGERLK+Y++HKI SELPEGPFC+VYMHSTVQKEDNSPG+TILRWIYEELP + K+RLQ +YF+HPGLRSRL+FATLGRFFLSGGLYWKIKY++RLQYLWED+KKGEVEIPEFVQ+HDDVLEHRPLTDYGIEPDPLHLTE+P+TAYS GRYEER TSRE MS Sbjct: 82 APVVSGERLKKYVFHKIVSELPEGPFCIVYMHSTVQKEDNSPGLTILRWIYEELPSDFKDRLQTVYFVHPGLRSRLLFATLGRFFLSGGLYWKIKYVSRLQYLWEDVKKGEVEIPEFVQSHDDVLEHRPLTDYGIEPDPLHLTEMPSTAYSFGRYEERWTSRECMS 247
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: B9SZT0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108000 PE=4 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 4.562e-96 Identity = 139/173 (80.35%), Postives = 159/173 (91.91%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A V+S ERLK+YI+HK+CSELPEGPFC+VYMHSTVQKEDNSPG+TILRWIYEELP + KNRLQV+YFIHPGLRSRLVFATLGRFFLSGGLYWKIKY++RLQYLWEDIKKGEVEIPEFVQ+HDD+LEHRPLTDYGIEPDP HL E+P TAYSLG+YEER +RE+ + Sbjct: 89 VIGKYFPAQVISAERLKKYIFHKMCSELPEGPFCIVYMHSTVQKEDNSPGITILRWIYEELPADYKNRLQVVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYVSRLQYLWEDIKKGEVEIPEFVQSHDDILEHRPLTDYGIEPDPFHLNEIPTTAYSLGKYEERWAAREYAT 261
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: M5W350_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010499mg PE=4 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 1.489e-95 Identity = 139/173 (80.35%), Postives = 161/173 (93.06%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + APVVSG+RLKRYI+HK+CSELPEGP+C+VYMHSTVQKEDNSPG+TILRWIYE+LP +K+RLQ++YFIHPGLRSRLVFATLGRFFL+GGLYWKIKY++RLQYLWE+IKKGEVEIPEFV+ HDDVLEHRPLTDYGIEPDPLH+ EVP+TAYS GRYEER SRE+ S Sbjct: 75 IVGKYFPAPVVSGDRLKRYIFHKLCSELPEGPYCIVYMHSTVQKEDNSPGITILRWIYEDLPSYLKDRLQIVYFIHPGLRSRLVFATLGRFFLTGGLYWKIKYVSRLQYLWENIKKGEVEIPEFVKGHDDVLEHRPLTDYGIEPDPLHMIEVPSTAYSFGRYEERWASREYTS 247
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A9PCA7_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 2.369e-95 Identity = 141/173 (81.50%), Postives = 158/173 (91.33%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A VVSGERLK+YI+HKICSELPEGP C+VY HSTVQKEDNSPGVTILRWIYEELP IK+RLQ +YFIHPGLRSRLVFATLGRFFLSGGLYWKIKY++RLQYLWEDIKKGE+EIPEFVQNHD++LE+RPLTDYGIEPDP HL+E+P TAYS GRYEER +SREF S Sbjct: 80 IVGKYFPAQVVSGERLKKYIFHKICSELPEGPLCIVYKHSTVQKEDNSPGVTILRWIYEELPAGIKDRLQTVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYVSRLQYLWEDIKKGEIEIPEFVQNHDNILENRPLTDYGIEPDPFHLSEMPMTAYSFGRYEERWSSREFAS 252
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A067K384_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22470 PE=4 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 4.097e-91 Identity = 135/171 (78.95%), Postives = 155/171 (90.64%), Query Frame = -3 Query: 282 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREF 794 ++ + A V+SGERLK+YI HKICSELPEGPFC+VYMH+TVQKEDNSPGVTILRWIYEELP + K+RLQV+YFIHPGLRSRLVFATLGRFFLSG LYWKIKY++RLQYLW+DIK+GEVEIPEFV +HDD+LE RPLTDYGIEPDP HL EVPNTAYS G+YE+R +RE+ Sbjct: 84 IVGKYFPAQVISGERLKKYILHKICSELPEGPFCIVYMHTTVQKEDNSPGVTILRWIYEELPADYKDRLQVVYFIHPGLRSRLVFATLGRFFLSGSLYWKIKYVSRLQYLWDDIKRGEVEIPEFVCSHDDILEDRPLTDYGIEPDPFHLHEVPNTAYSFGKYEQRWVAREY 254 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092018 ID=g.barbadense_cottongen_reftransV1_0092018; Name=g.barbadense_cottongen_reftransV1_0092018; organism=Gossypium barbadense; type=contig; length=2035bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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