g.barbadense_cottongen_reftransV1_0092018, g.barbadense_cottongen_reftransV1_0092018 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092018
Unique Nameg.barbadense_cottongen_reftransV1_0092018
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2035
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: I3SI64_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.487e-87
Identity = 127/173 (73.41%), Postives = 152/173 (87.86%), Query Frame = -3
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   Y A VVS ERLKRY++H+ICSELP+GPFC+VYMHSTVQ EDNSPG+TILRWIYEELP + K+RLQ +YFIHPGLRSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV+ HDD+LEHRPLTDYGIEPDP HLT +P+   S G+YE+R  +R++ S
Sbjct:   79 IVGKYYPATVVSAERLKRYVFHRICSELPDGPFCIVYMHSTVQTEDNSPGLTILRWIYEELPADFKDRLQTVYFIHPGLRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPDPFHLTGMPSLTPSFGKYEDRWGARDYAS 251          
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: M1APX4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010645 PE=4 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.854e-87
Identity = 125/173 (72.25%), Postives = 157/173 (90.75%), Query Frame = -3
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A V+S ERLK+Y+++KIC+ELPEGPFC+VYMHSTVQKEDN+PG+TILRWIYEELP + K+RLQ +YF+HPGLRSRLV ATLGRFFLSGGLYWK+KY++RLQYLW+DIKKGE+EIPEFVQ HD++LEHRPLTDYGIEPDPLHL+++P +AYS+GR++    SR++MS
Sbjct:   78 IVGKYFPALVISAERLKKYVFNKICTELPEGPFCIVYMHSTVQKEDNNPGLTILRWIYEELPSDHKDRLQAVYFVHPGLRSRLVLATLGRFFLSGGLYWKVKYVSRLQYLWDDIKKGELEIPEFVQKHDEILEHRPLTDYGIEPDPLHLSQMPPSAYSIGRHDTGWASRQYMS 250          
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: Q2HW59_MEDTR (Cellular retinaldehyde-binding/triple function, C-terminal OS=Medicago truncatula GN=MTR_7g090050 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 5.518e-87
Identity = 129/177 (72.88%), Postives = 153/177 (86.44%), Query Frame = -3
Query:  264 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS*FRY 794
            ++   Y A VVS ERLKRY++HK+ SELP+GPFC+VY+HSTV  EDNSPG+TILRWIYE+LP E K+RLQ +YFIHPGLRSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIPEFVQ HDD+LE+RPLTDYGIEPDP HLT +P+ AYS G+YEER   R+ +S + Y
Sbjct:   72 IIGKHYPATVVSAERLKRYVFHKLFSELPDGPFCIVYLHSTVTNEDNSPGMTILRWIYEDLPDEFKDRLQTLYFIHPGLRSRLVMATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPEFVQKHDDILENRPLTDYGIEPDPFHLTGMPSVAYSFGKYEERWAGRDHISEYEY 248          
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A0B2REU4_GLYSO (Ganglioside-induced differentiation-associated-protein 2 OS=Glycine soja GN=glysoja_025863 PE=4 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 2.677e-86
Identity = 127/180 (70.56%), Postives = 153/180 (85.00%), Query Frame = -3
Query:  276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVT-------ILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794
            ++   + A VVS ERLKRY+++KICSELPEGPFC+ YMHSTVQKEDNSPG+T       ILRWIYEELP + K+RLQ +YF+HPG RSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER   R ++S
Sbjct:   73 IVGKYFPATVVSAERLKRYVFNKICSELPEGPFCIAYMHSTVQKEDNSPGITYINSNITILRWIYEELPADFKDRLQTVYFVHPGFRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGMPSTTYSFGKYEERWAGRNYVS 252          
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A072U1L7_MEDTR (Ganglioside-induced differentiation-associated-like protein OS=Medicago truncatula GN=MTR_7g090050 PE=4 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.820e-86
Identity = 128/170 (75.29%), Postives = 150/170 (88.24%), Query Frame = -3
Query:  264 APVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS*FRY 773
            A VVS ERLKRY++HK+ SELP+GPFC+VY+HSTV  EDNSPG+TILRWIYE+LP E K+RLQ +YFIHPGLRSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIPEFVQ HDD+LE+RPLTDYGIEPDP HLT +P+ AYS G+YEER   R+ +S + Y
Sbjct:   36 ATVVSAERLKRYVFHKLFSELPDGPFCIVYLHSTVTNEDNSPGMTILRWIYEDLPDEFKDRLQTLYFIHPGLRSRLVMATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPEFVQKHDDILENRPLTDYGIEPDPFHLTGMPSVAYSFGKYEERWAGRDHISEYEY 205          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I3SI64_LOTJA3.487e-8773.41Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
M1APX4_SOLTU3.854e-8772.25Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
Q2HW59_MEDTR5.518e-8772.88Cellular retinaldehyde-binding/triple function, C-... [more]
A0A0B2REU4_GLYSO2.677e-8670.56Ganglioside-induced differentiation-associated-pro... [more]
A0A072U1L7_MEDTR3.820e-8675.29Ganglioside-induced differentiation-associated-lik... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001251CRAL-TRIO lipid binding domainPFAMPF13716CRAL_TRIO_2coord: 8..125
e-value: 1.4E-25
score: 89.9
NoneNo IPR availablePANTHERPTHR11106GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATEDcoord: 4..169
NoneNo IPR availablePANTHERPTHR11106:SF64SUBFAMILY NOT NAMEDcoord: 4..169

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092018 ID=g.barbadense_cottongen_reftransV1_0092018; Name=g.barbadense_cottongen_reftransV1_0092018; organism=Gossypium barbadense; type=contig; length=2035bp
CTCCCAACAAAATGCCGACAAATTAATTATCAAATTTATAGTATCTATGA
TATTTTAAAGCTGCAATATAATAGTAAATCTATGCATTAATGTTAGCCAT
AACACACCAAATTTAATTAACTACAAGTACAGCGTAGCGATTTCTCACAA
TTCAAGGCACGCAATATAAAGACTACTATAGACAATCTTATTTCTTGTTT
TACCTGATAATTCCTACTGGCCAGATCCTGCAAACCCTTTTACTGGGTTC
AGCTGTGTATTTAATATCTAAACTATGACATGAATTCCCTTGAGGTTAAT
CTCTCTTCATACCTCCCTAATGAGTAAGCAGTGTTAGGTACCTCTGTTAA
GTGGAGAGGATCTGGCTCAATACCATAATCTGTTAAGGGCCGGTGCTCAA
GAACATCGTCATGGTTTTGCACAAATTCAGGGATCTCAACCTCTCCCTTC
TTTATGTCCTCCCATAGGTATTGTAGGCGGTTTATGTATTTGATCTTCCA
GTATAAACCCCCACTTAAGAAGAATCGGCCAAGAGTGGCAAAGACAAGCC
GTGAACGAAGCCCAGGGTGTATGAAGTAGATGACTTGCAGCCTATTCTTG
ATCTCAGGGGGAAGTTCTTCGTAAATCCACCTCAAGATAGTAACACCAGG
GGAGTTATCCTCCTTCTGCACTGTACTGTGCATATAAACTAAGCAGAATG
GACCTTCAGGCAACTCACTGCATATCTTGTGGTATATATATCTCTTCAGT
CGCTCCCCGCTAACAACTGGAGCTGTATACATTGTGGCAAGTAGTTAGTA
AAAAGCCAAATCGAAGTTTACTAGAGGAACAACTTAAGCCTGAAGAAACC
CGATAAAATTTGTTCAATTTCAAATATTGTCTTTGACATTAATCAAGAAA
CCAACATTTAAGACAATTACATCACAATCAAACAGAACTCTTTAGAGAAT
AGAAATGAAAACTGCAAAGACTTATCACATTGAGCTTCACACCAAGAGGT
TCAACTAATGTAAAGGACTCTGGCATAAATGCATTGCATTAGGTACATAG
GATGATGGAGAGGATAAAACAAATAAGTATATGGAAAAAGGTAGGATCGG
ATGATCTTATCCTATTCATGTTTAGTGTATAATAAGTTAAAAAGTATATT
TGTCATAGATTTCATCTTCAGCCATGTTTTGTGTAGGATAGGTCATAGGG
TAATATTTTGGTGATCGGTCTAAATTAACTCCCAAATCAACTGAAGTAAA
AGCATAATGATGAAAACTAAGGAAAGAAATAAAATCGAAACCTAAGCCTT
GATTAGAGATTCGAAATTAACTAATGGCCTTTCCTAAAATAGGTTTAGCC
CATAACATATATACACTCCATTACCTATACTAGAGGTGCCTCGGACTCAT
TAAGCATTAATTTTGTCTTGGGATTACAAAAAAAAAAAGTTTATGGTTCC
ATCTTTGTTGTGGTGATAATTCTCGACTATAACACATTACATTCTTTGTT
CTATGAATTCTGATGCTACTCATATTACTGAGTTGTTTTCAAGAAAATGC
TAAGGCTACATGGTGCTCTGAAATCTATAGTTTTTTATAGCAAAAATGAT
GAGTCAAAGAAATATAGAATCCAAACTACAATATTAACGTAAACAATGCA
AGCCAAGCACATTTAAGCTTACTTAGACACTTCTTGCTATTTTGCGTATT
GCACATTATAATTGGTTAATCATAATTGAGATATTCTATATTAATAAGTA
AACTTCAATGATATGATCATATAAAATTATGAAAACAAAGACCATATGAC
ATAGAAAGCCTAACAAAGTAATTATTAAGAGTTACTATTATTAAATCCTT
ATGCATGACAATCATGTTTCTTAGATAGATTCTAGTAGTGTCATTGAGGG
CACAAGGTGCAGTCTAAGCACTAGAAACCTTTATTGCTTGGGGCACAAGG
CACAAAAAGAAGGCTCACCTGAGTGAAGCATGGTGCAATGTATATTTGTG
TATTTAAGTGCCTCCCTCCCTCCTATCTCTCTCTC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom