g.barbadense_cottongen_reftransV1_0092018, g.barbadense_cottongen_reftransV1_0092018 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: I3SI64_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 3.487e-87 Identity = 127/173 (73.41%), Postives = 152/173 (87.86%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ Y A VVS ERLKRY++H+ICSELP+GPFC+VYMHSTVQ EDNSPG+TILRWIYEELP + K+RLQ +YFIHPGLRSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV+ HDD+LEHRPLTDYGIEPDP HLT +P+ S G+YE+R +R++ S Sbjct: 79 IVGKYYPATVVSAERLKRYVFHRICSELPDGPFCIVYMHSTVQTEDNSPGLTILRWIYEELPADFKDRLQTVYFIHPGLRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPDPFHLTGMPSLTPSFGKYEDRWGARDYAS 251
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: M1APX4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010645 PE=4 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 3.854e-87 Identity = 125/173 (72.25%), Postives = 157/173 (90.75%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A V+S ERLK+Y+++KIC+ELPEGPFC+VYMHSTVQKEDN+PG+TILRWIYEELP + K+RLQ +YF+HPGLRSRLV ATLGRFFLSGGLYWK+KY++RLQYLW+DIKKGE+EIPEFVQ HD++LEHRPLTDYGIEPDPLHL+++P +AYS+GR++ SR++MS Sbjct: 78 IVGKYFPALVISAERLKKYVFNKICTELPEGPFCIVYMHSTVQKEDNNPGLTILRWIYEELPSDHKDRLQAVYFVHPGLRSRLVLATLGRFFLSGGLYWKVKYVSRLQYLWDDIKKGELEIPEFVQKHDEILEHRPLTDYGIEPDPLHLSQMPPSAYSIGRHDTGWASRQYMS 250
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: Q2HW59_MEDTR (Cellular retinaldehyde-binding/triple function, C-terminal OS=Medicago truncatula GN=MTR_7g090050 PE=2 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 5.518e-87 Identity = 129/177 (72.88%), Postives = 153/177 (86.44%), Query Frame = -3 Query: 264 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS*FRY 794 ++ Y A VVS ERLKRY++HK+ SELP+GPFC+VY+HSTV EDNSPG+TILRWIYE+LP E K+RLQ +YFIHPGLRSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIPEFVQ HDD+LE+RPLTDYGIEPDP HLT +P+ AYS G+YEER R+ +S + Y Sbjct: 72 IIGKHYPATVVSAERLKRYVFHKLFSELPDGPFCIVYLHSTVTNEDNSPGMTILRWIYEDLPDEFKDRLQTLYFIHPGLRSRLVMATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPEFVQKHDDILENRPLTDYGIEPDPFHLTGMPSVAYSFGKYEERWAGRDHISEYEY 248
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A0B2REU4_GLYSO (Ganglioside-induced differentiation-associated-protein 2 OS=Glycine soja GN=glysoja_025863 PE=4 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 2.677e-86 Identity = 127/180 (70.56%), Postives = 153/180 (85.00%), Query Frame = -3 Query: 276 LLATMYTAPVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVT-------ILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS 794 ++ + A VVS ERLKRY+++KICSELPEGPFC+ YMHSTVQKEDNSPG+T ILRWIYEELP + K+RLQ +YF+HPG RSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIP+FV++HDD+LE+RPLTDYGIEPDP HLT +P+T YS G+YEER R ++S Sbjct: 73 IVGKYFPATVVSAERLKRYVFNKICSELPEGPFCIAYMHSTVQKEDNSPGITYINSNITILRWIYEELPADFKDRLQTVYFVHPGFRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGMPSTTYSFGKYEERWAGRNYVS 252
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Match: A0A072U1L7_MEDTR (Ganglioside-induced differentiation-associated-like protein OS=Medicago truncatula GN=MTR_7g090050 PE=4 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 3.820e-86 Identity = 128/170 (75.29%), Postives = 150/170 (88.24%), Query Frame = -3 Query: 264 APVVSGERLKRYIYHKICSELPEGPFCLVYMHSTVQKEDNSPGVTILRWIYEELPPEIKNRLQVIYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYINRLQYLWEDIKKGEVEIPEFVQNHDDVLEHRPLTDYGIEPDPLHLTEVPNTAYSLGRYEERLTSREFMS*FRY 773 A VVS ERLKRY++HK+ SELP+GPFC+VY+HSTV EDNSPG+TILRWIYE+LP E K+RLQ +YFIHPGLRSRLV ATLGRFFLSGGLYWKIKY++RLQYLW+DIKKGE+EIPEFVQ HDD+LE+RPLTDYGIEPDP HLT +P+ AYS G+YEER R+ +S + Y Sbjct: 36 ATVVSAERLKRYVFHKLFSELPDGPFCIVYLHSTVTNEDNSPGMTILRWIYEDLPDEFKDRLQTLYFIHPGLRSRLVMATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPEFVQKHDDILENRPLTDYGIEPDPFHLTGMPSVAYSFGKYEERWAGRDHISEYEY 205 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092018 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092018 ID=g.barbadense_cottongen_reftransV1_0092018; Name=g.barbadense_cottongen_reftransV1_0092018; organism=Gossypium barbadense; type=contig; length=2035bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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