g.barbadense_cottongen_reftransV1_0092017, g.barbadense_cottongen_reftransV1_0092017 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0092017
Unique Nameg.barbadense_cottongen_reftransV1_0092017
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2863
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: C6TI80_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 6.218e-53
Identity = 93/116 (80.17%), Postives = 108/116 (93.10%), Query Frame = 2 
Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F+M  L++V NV VSCT+IPL++L+YEPPRT+SFKTIEASLRVDALASAGFK+SRSKLVD+ISNGDVR+NW  VT  GTTLK+GDI+S+SGKGRLKIGEINSTKKGKF+VELIRYL
Sbjct:  209 FLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSISGKGRLKIGEINSTKKGKFAVELIRYL 324

HSP 2 Score: 123.25 bits (308), Expect = 2.519e-43
Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = 2 
Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            +G+    Q +KG+ D+LLKGVG++S  +EVKHIL+ ARRA+ +RE+ HTDFLTPPVLKESM VL+KLADVKA+AQGGYPQ E
Sbjct:   54 SGVSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAE 135

HSP 3 Score: 82.4185 bits (202), Expect = 2.519e-43
Identity = 46/92 (50.00%), Postives = 52/92 (56.52%), Query Frame = 3 
Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH E LT+DP                    D I  L            SI+GNF F+PCSHGDFLG+ILG GI REKLGDIILQ
Sbjct:  134 AERCRISVGHPEELTSDP--------------------DIISAL------------SITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQ 193
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BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: V7CPF8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G286700g PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 6.759e-53
Identity = 95/116 (81.90%), Postives = 108/116 (93.10%), Query Frame = 2 
Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F+M  L++V NV V+CT+IPL++L+YEPPRT+SFKTIEASLRVDALASAGFKISRSKLV++ISNGDVRVNW  VT  GTTLK+GDIISVSGKGRLKIGEINSTKKGKF+VELIRYL
Sbjct:  208 FLMSTLVKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKISRSKLVNMISNGDVRVNWNPVTTKGTTLKSGDIISVSGKGRLKIGEINSTKKGKFAVELIRYL 323

HSP 2 Score: 118.627 bits (296), Expect = 5.894e-42
Identity = 58/114 (50.88%), Postives = 80/114 (70.18%), Query Frame = 2 
Query: 1004 HMYMFQQMGCMHIQQC*FSSRVTSYLKF*NAHTGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            H ++F        Q+   SS++ S     ++ +G+    Q   G+ DVL+KGVG+++  +EVKHIL+ ARRA+ +RE  HTDFLTPPVLKESM+VL+KLADVKA++QGGYPQ E
Sbjct:   24 HSHIFNTNATFSFQRK-LSSQILSVST--SSASGVSQAVQASNGEVDVLVKGVGERNVTKEVKHILEMARRASLKRETLHTDFLTPPVLKESMLVLEKLADVKAISQGGYPQAE 134

HSP 3 Score: 82.4185 bits (202), Expect = 5.894e-42
Identity = 46/92 (50.00%), Postives = 51/92 (55.43%), Query Frame = 3 
Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH E LT+DP                    D I  L            SI GNF F+PCSHGDFLG+ILG GI REKLGDIILQ
Sbjct:  133 AERCRISVGHPEELTSDP--------------------DVISAL------------SIKGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQ 192
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0A0LC56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.841e-52
Identity = 94/116 (81.03%), Postives = 109/116 (93.97%), Query Frame = 2 
Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            F++  L +V NV+VSCT+IPL ALEYEPP+T++FKTIEASLRVDA+ASAGFKISRSKLVDLIS+GDVRVNW ++TKNGT LKTGDI+SVSGKGRLKIGEINSTKKGKF+VELIRY+
Sbjct:  204 FLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV 319

HSP 2 Score: 120.168 bits (300), Expect = 2.452e-42
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 2 
Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            +G+C + Q +KGD DVLL GVGDK  I +VK IL  A+R+ +RREV HT+FLTPPV+KESM+ +QKLADVKA+AQGGYP+ E
Sbjct:   49 SGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAE 130

HSP 3 Score: 82.4185 bits (202), Expect = 2.452e-42
Identity = 45/92 (48.91%), Postives = 54/92 (58.70%), Query Frame = 3 
Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+S+GH++ LT+DP                    D I  L            SI+GNF+F PCSHGDFLG+ILG GIAREKLGDI+LQ
Sbjct:  129 AERCRISVGHADELTSDP--------------------DIISAL------------SITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQ 188
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BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: Q93YQ0_ARATH (At1g53120 OS=Arabidopsis thaliana GN=F10L8.3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.027e-52
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 2 
Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            FV+  L +V NV V+C++IPLLALEYEPPRT SFKT+EASLR+DA+ASAGFKISRSKLVDLIS+ DVRVNWATVTKNGT +KTGD++SVSGKGRLKIGEIN TKKGKF+VE+IRYL
Sbjct:  205 FVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIGEINETKKGKFAVEIIRYL 320

HSP 2 Score: 115.931 bits (289), Expect = 1.133e-41
Identity = 55/107 (51.40%), Postives = 76/107 (71.03%), Query Frame = 2 
Query: 1031 CMHIQQC*FSSRVTSYLKF*NAHTGL--CHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            C+H  Q    + ++    F    + L  C+ ++ IKGD D LLKGVGD++  +EVK IL+ ARRA+++REV HTDFLTPP++KES+ +L+K ADVK VAQGGYP+ E
Sbjct:   25 CLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIVAQGGYPEAE 131

HSP 3 Score: 84.7297 bits (208), Expect = 1.133e-41
Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 3 
Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697
            AERCR+SIGH +VLT+DP++VA                                 +SI+GNF FQPCSHGDFLGAILG GI+REKLGDI++Q
Sbjct:  130 AERCRISIGHPDVLTSDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGAILGTGISREKLGDILIQ 189
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: B9HZV1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12050g PE=4 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 2.408e-51
Identity = 92/116 (79.31%), Postives = 106/116 (91.38%), Query Frame = 2 
Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590
            +++  L +V +VSVSCT IPL A+EYEPPRT+SFKT+EASLRVDALASAGFKISRSKLVDLISN DVRVNW T+TKN TTLKTGD++SVSGKGRLKIGEIN+T+KGKF+VELI YL
Sbjct:  207 YIVSSLDKVGDVSVSCTPIPLHAIEYEPPRTKSFKTVEASLRVDALASAGFKISRSKLVDLISNKDVRVNWTTITKNNTTLKTGDVVSVSGKGRLKIGEINTTRKGKFAVELIHYL 322

HSP 2 Score: 124.405 bits (311), Expect = 3.618e-42
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 2 
Query: 1103 GLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345
            G+CH++Q  KG+  V LKGV DKS IEEVK ILD ARRA+ RREV HTDFLTPP LKES+ VL+KLADVKA+AQGGYPQ E
Sbjct:   54 GMCHVAQATKGEV-VALKGVEDKSVIEEVKRILDMARRASLRREVLHTDFLTPPTLKESLHVLEKLADVKAIAQGGYPQAE 133

HSP 3 Score: 77.411 bits (189), Expect = 3.618e-42
Identity = 45/91 (49.45%), Postives = 52/91 (57.14%), Query Frame = 3 
Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIIL 1694
            AERCRLS+GH E LT+DP++VA                                 +SI+GNF FQ CSHGDFLGAILG GIAR KLGDII+
Sbjct:  132 AERCRLSVGHPETLTSDPDIVAA--------------------------------LSITGNFGFQLCSHGDFLGAILGTGIARNKLGDIIV 190
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
C6TI80_SOYBN6.218e-5380.17Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
V7CPF8_PHAVU6.759e-5381.90Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A0A0LC56_CUCSA1.841e-5281.03Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
Q93YQ0_ARATH8.027e-5280.17At1g53120 OS=Arabidopsis thaliana GN=F10L8.3 PE=2 ... [more]
B9HZV1_POPTR2.408e-5179.31Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..147
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.519
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0092017 ID=g.barbadense_cottongen_reftransV1_0092017; Name=g.barbadense_cottongen_reftransV1_0092017; organism=Gossypium barbadense; type=contig; length=2863bp
CAATATCCGCTGAGAAGTTCAGGTTTTTTATTTTGTTATGAATTTTTTCT
TCTTTTTTATCTATATATATATATTTGTGATAGTTGTATAAATAGAGATA
CCCATGGAGCTAAATTAGAAGATTTTCTATTTATTTTGAAGTAATCTTGT
GCAATTAGAGATACCCTTTATGCTAAAGTTAAAGAATTTGCAAATATCTT
TTGTTAGTTTTGAGGTATAGAGATGCCCATTTAGCCAGAGAAAAAAATAT
TTACATTTACCTCTTCTTAACATTCTTGGTTTATTTTGAAGTAATATTGT
GTAATTATAGACAAACATTGATAAAAGGGAGGAATTTGAGCAATTTTCTT
TGTTAGTTTTGTTATAATCGTGGATTAATTTGAGACACCCATTAAGCTGA
ATTAGGAGAATCTAGTAAGCGCATCTGAAAAAAAAAAGTATTGAAGGAAC
TAAAATGCTTGAGATTATAACAATGTTGTCACTCAAATGAACTTGTAAGT
CAGTTATATTACTCTTATCAGGAAAAAAAAGAGATGCTTCTTTTTACTAA
AAGGTTTGTTTAGATTTCGGATGGTTTTATGTCAGGGATTCCATCCAGGG
ATGAAGCATGCACTGCAACTCGTATCATTATGTAGACGTTTTACCTCCGA
GTGAAATATGCCAATTATTTCAAATGCATTTTGTTAAGGAAGAATGAATG
CTTGTTAACCTCAGCTCGATATCAAAATATATTGCCATCCTTAATGAATG
CACACCTAGGGCATTGACCACAATTCCAATTCAACTTTTTATTATTCCTA
GAACTAGAGTCTATACACAAGAGAACTTATAGTAGTAGTTGTTTCTTAGA
ATTATCAATTTATCACAAAGTTATTGAACATTAAACATATGCAATAGCCA
CCATTACCATGGCTGCTGAACCTGTACTTTAGCATTGTTAGTAAGCTGTA
GGATTAACTTCTGCAGAGTCCAGCTTCTTCAACTTTTTCAATTGTTTTTT
TGCCATATGTACATGTTTCAGCAAATGGGATGTATGCATATACAACAGTG
CTGATTTTCTAGTCGAGTAACATCCTATTTAAAATTTTGAAATGCACACA
CAGGGTTATGTCACATTTCCCAAGTTATAAAGGGGGATAATGATGTTTTA
CTTAAAGGAGTGGGAGATAAGAGTGCTATCGAAGAAGTGAAACATATACT
TGATACGGCTAGACGTGCAGCAACCAGAAGAGAGGTATTCCATACAGATT
TTCTAACCCCACCAGTATTAAAGGAGTCCATGATTGTTCTGCAAAAACTG
GCTGATGTTAAGGCAGTTGCACAGGGGGGGTATCCTCAGGTTGAACCAAA
TGGATTCAGTTTACTTCTCCTTCATTGATTTCTTTGGTTATACAAGTTGA
TGAATCTCCGTGATCCTTTAGGCTGAGCGTTGCCGTCTTTCTATTGGACA
TTCAGAAGTATTGACCAATGATCCTAATGTAGTTGCAATAATAAAGTAAG
TAATATCCTTCATTGTCAAGAGCTGGTGACTGCTTGACAGGATTGAAACT
CTGAATCAAGATATATGCATATTTGGTTTTTTCTTTGTCAGTATCTCGGG
AAACTTCAGCTTTCAACCTTGTTCTCATGGTGACTTCCTTGGTGCAATTC
TTGGTAAAGGTATTGCTAGAGAGAAGCTTGGGGATATTATCTTGCAGGTA
TTCAGATGGTCAATTGCGGATTAGGCAATTTAGAACTTGGGTTTACTTTA
AAAGCCCTGGTTTAATTTCTTTCATTAAGATCATTTATACCTGCCTCCTA
AACCAGCAAAGAAGTTTTCTCTGCGTCTAATATATTACCAGGCTGTAACC
TATGTTGACTGTTAACTAGGGAGAAAAGGGAGCTCATGTCCTGATTGTTC
CTGAACTCGTTGACTTTCTTATGTCGACACTGGACAAGGTGAACTTTTTT
CCCCTTGGATACACTCAATGACTGCAATAATTTTAAATTTAAATTTTTTT
CCACTTTTTCGGGTAACAGTAACAGCATTATCACAGTAACCTTGCAGTGA
AATTTTTATTCTTGCACACTGTTAGTATCACATTAAAATCAATATATTGT
CTGTCATATTTGTTTGTTTTTAGTGGTAAATAACACTCACATTCTTGTAA
TGTCTGTAACGGTTATGGAGTCTCCAAAGGCATGAGCTAATCTTGCCGTA
TTGCAGTAAAAAGAATTGTGGGTGAAATCCTCTCCAACTCTTTTTGTTAT
GTGTTTCCTTTTGCAGGTTGCTAATGTATCAGTATCATGTACACAGATAC
CTCTGCTTGCACTTGAATATGAGCCACCAAGGACGCAGTCATTCAAAACC
ATAGAAGCATCGCTTCGTGTTGATGCTCTTGCTAGTGCAGGATTTAAGAT
TTCTAGATCTAAACTAGTTGATTTGATAAGCAACGGAGATGTACGCGTAA
ATTGGGCAACTGTAACAAAAAATGGAACAACTCTCAAGACCGGTGACATT
ATCTCTGTTAGTGGGAAAGGAAGACTAAAGATTGGAGAAATTAACAGTAC
AAAGAAGGGAAAGTTTTCTGTGGAACTCATTCGGTATTTGTAGGGTTAGC
AATTGAGTAAAAGGATGATGGAGTTTAGGCAATTGAGGATACACATTGTG
ATGTTTCTAACTAAACAAGGGATTCTCAAATATCAGAAGCCATAGAAAAG
AAAAAAAGGAATTACATTACAAGGAGTCTGGCTAATGTATCAAAGCTGTG
AATTCCAAGACAAATGCCAGCTTCTTGCATGGCATCTGAGGGTCATAGGA
AAACTCATCACTTGAGTGCATTAGAGGCATCCAGAATATTCATATAACTT
TTTTATTAGTCAA
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