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Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
This mRNA is associated with the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NC_023215 | region | NC_023215:21548..24366 - |
Properties
| Property Name | Value |
|---|
| Product | RNA polymerase beta |
| Source | genbank |
Sequences
The
following sequences are available for this feature:
mRNA sequence >NC_023215.1-rpoC1.m13 ID=NC_023215.1-rpoC1.m13|Name=rpoC1|organism=Gossypium herbaceum|type=mRNA|length=2070bp
atgatcgaccgatataaacatcaacaactccgaattggatcagtttctcc
ccaacaaataagtgcttgggccaagaaaatcctacctaatggagaaaccg
ttggagaggtgacaaaaccctatacttttcattacaaaaccaataaaccg
gaaaaggatggattattttgtgaaagaatttttggacctataaaaagtgg
aatttgcgcttgtggaaattatcgagtaattggaaatcaaaaggagggcc
ctaaattttgtgaacaatgcggagttgaatttgttgattctcggatacga
agatatcaaatgggatacataaggctggcatgtccagtaactcatgtatg
gtatttgaaacgccttcctagttatatcgccaatcttttagacaaacctc
ttaaagaattagagggtctagtatactgcgatgtgtatcctaatttttct
tttgctaggcccatcgctaaaaaacctactttcttacgattacgaggttc
attcgaatatgaaattcaatcctggaaatacagtatcccactttttttta
ctacccaaggtttcgatacatttcgaagtcgcgaaatttctaccggagca
ggtgctattcgagaacaattagccgatctagatttgcgaattcttatcga
ttattcggtggtagaatggaaagaattaggagaagaaggcctcacgggta
atgaatgggaagatcgaaaaattggaagaagaaaggattttttggttaga
cgcatggaattggctaagcattttattcgaacaaatatagaaccagaatg
gatggttttatgtctattaccggttcttcctcccgagttgagaccgatca
ttcagatagatgggggtaaactaatgagttcggatattaatgaactctat
agaagagttatctatcgaaataatactcttaccgatctattaacaacaag
tagatctacgccaggggaattagtaatgtgtcaggaaaaattagtacaag
aagccgtggatacacttcttgataatggaatccgcggacaaccaatgagg
gacggtcataataaggtttacaagtcgttttcagatgtaattgaaggcaa
agagggaagatttcgcgagactttgcttggcaaacgagtcgattattcgg
gacgttctgtcattgttgttggcccctcactttcattacatcgctgtgga
ttgcctcgcgaaatagcaatagagcttttccagacatttgtaattcgcgg
tctaattagacaacatcttgctccgaacataggagttgctaagagtaaaa
ttcgggaaaaagggccgattgtatgggaaatactgcaagaagttatgcgg
ggacatcctgtattgctgaatagagcgcctactctgcatagattaggtat
acaggcattccaacctattttagtggaaggacgcgctatttgtttacatc
cattagtttgtaagggattcaatgcagactttgatggggatcaaatggca
gttcatgtacctttatctttagaggcgcaagcggaggctcgtttacttat
gttttctcatatgaatctcttgtctccagctattggggatcccatttccg
taccgactcaagatatgcttattgggctctatgtattaacgagtgggaat
cgtcgaggtatttgtgcgaataggtataatccatggaatcgaaaaagcta
tcaaaatgaaagaattgacgataataactataagtctacaagggagcctt
ttttttgtaattcctatgatgcgattggagcttataggcagaaaagaatc
aatttagatagtcctttgtggctccggtggcgactagagcaatgcgttat
tgcttcaagagaagctcccatcgaagttcactatgaatctttgggtacct
atcatgagatttatggacattatctaatagtaagaagtttaaaaaaaaaa
attctttgtatatacattcgaaccactgttggtcatatttctctttaccg
agaaatcgaagaagctatacaagggttttttcgggcctactcatatgata
cccaatcatatggtatctaa back to topprotein sequence of rpoC1 >NC_023215.1-rpoC1.p13 ID=NC_023215.1-rpoC1.p13|Name=rpoC1|organism=Gossypium herbaceum|type=polypeptide|length=689bp
MIDRYKHQQLRIGSVSPQQISAWAKKILPNGETVGEVTKPYTFHYKTNKP
EKDGLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIR
RYQMGYIRLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYPNFS
FARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRSREISTGA
GAIREQLADLDLRILIDYSVVEWKELGEEGLTGNEWEDRKIGRRKDFLVR
RMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY
RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMR
DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCG
LPREIAIELFQTFVIRGLIRQHLAPNIGVAKSKIREKGPIVWEILQEVMR
GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMA
VHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGN
RRGICANRYNPWNRKSYQNERIDDNNYKSTREPFFCNSYDAIGAYRQKRI
NLDSPLWLRWRLEQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSLKKK
ILCIYIRTTVGHISLYREIEEAIQGFFRAYSYDTQSYGI back to topmRNA from alignment at NC_023215:21548..24366- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >NC_023215.1-rpoC1.m13 ID=NC_023215.1-rpoC1.m13|Name=rpoC1|organism=Gossypium herbaceum|type=mRNA|length=2819bp|location=Sequence derived from alignment at NC_023215:21548..24366- (Gossypium herbaceum)
ATGATCGACCGATATAAACATCAACAACTCCGAATTGGATCAGTTTCTCC
CCAACAAATAAGTGCTTGGGCCAAGAAAATCCTACCTAATGGAGAAACCG
TTGGAGAGGTGACAAAACCCTATACTTTTCATTACAAAACCAATAAACCG
GAAAAGGATGGATTATTTTGTGAAAGAATTTTTGGACCTATAAAAAGTGG
AATTTGCGCTTGTGGAAATTATCGAGTAATTGGAAATCAAAAGGAGGGCC
CTAAATTTTGTGAACAATGCGGAGTTGAATTTGTTGATTCTCGGATACGA
AGATATCAAATGGGATACATAAGGCTGGCATGTCCAGTAACTCATGTATG
GTATTTGAAACGCCTTCCTAGTTATATCGCCAATCTTTTAGACAAACCTC
TTAAAGAATTAGAGGGTCTAGTATACTGCGATGTGTGATTTGATCGAAAT
TATTATTTTACAGATTAGGAATGAGAAACTGTCATCCCATTCAATCGAAT
TGGGATGCCCTGGATCTGACATGTCTCTTGGGAAGAGTAACATGAAGCTC
AGAATTATGGGCGTATTCAATACTCCCAAATAAAAAGGGAATTGGTCTAT
GGTCGAGTCAGTAAAAATAAATAACTAGGAATTTTGAGTTGTACCTCGTG
AAAAAAAGACTTCTTTTTTTTGTGGAATTAACCGTTCTCATTTCTTTTAG
TTCTTTTAGAAAGAAATGAAATTATGTTCAAGGAAACAAATATGTCATGG
TTGCAGGAGTCTATACATCGCATATAGGCTTAGGCTTTAAGTTAAGGGCA
TCGTGGTATAATCGTCGAGGTACCGCAGGACCTAAGAGATCGAATGGAAG
GGTACATAGACAAGTAAATCCCTTATGACACTCCTTTAATTTTAGAGGAT
TCAGCATTCGAGGGGAAGTAGACTACTCAAGAATTTCACATTTCATTTAT
GTCCTAATTTTGAATTGAATAAAGAATTAAGAAAATCTAAATCAATAAAT
CAATAAAAGAAGAATCAATCAATGAAATGTTTCTTGGAACTTGAGTAAAG
AGTAGACCTTTTTTGGGGGTTCTAGAATTTGAAAGCGAGAACTCCTTTAC
TTTATCTTTATTTGGTGTAACTACTTGAGCCGGATGAGAGGAAACTCTCA
TGTCCGATTTTGAGGGGGGGATCCCGCAGGGCCCTATCCTAATTTTTCTT
TTGCTAGGCCCATCGCTAAAAAACCTACTTTCTTACGATTACGAGGTTCA
TTCGAATATGAAATTCAATCCTGGAAATACAGTATCCCACTTTTTTTTAC
TACCCAAGGTTTCGATACATTTCGAAGTCGCGAAATTTCTACCGGAGCAG
GTGCTATTCGAGAACAATTAGCCGATCTAGATTTGCGAATTCTTATCGAT
TATTCGGTGGTAGAATGGAAAGAATTAGGAGAAGAAGGCCTCACGGGTAA
TGAATGGGAAGATCGAAAAATTGGAAGAAGAAAGGATTTTTTGGTTAGAC
GCATGGAATTGGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGG
ATGGTTTTATGTCTATTACCGGTTCTTCCTCCCGAGTTGAGACCGATCAT
TCAGATAGATGGGGGTAAACTAATGAGTTCGGATATTAATGAACTCTATA
GAAGAGTTATCTATCGAAATAATACTCTTACCGATCTATTAACAACAAGT
AGATCTACGCCAGGGGAATTAGTAATGTGTCAGGAAAAATTAGTACAAGA
AGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGG
ACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGCAAA
GAGGGAAGATTTCGCGAGACTTTGCTTGGCAAACGAGTCGATTATTCGGG
ACGTTCTGTCATTGTTGTTGGCCCCTCACTTTCATTACATCGCTGTGGAT
TGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGCGGT
CTAATTAGACAACATCTTGCTCCGAACATAGGAGTTGCTAAGAGTAAAAT
TCGGGAAAAAGGGCCGATTGTATGGGAAATACTGCAAGAAGTTATGCGGG
GACATCCTGTATTGCTGAATAGAGCGCCTACTCTGCATAGATTAGGTATA
CAGGCATTCCAACCTATTTTAGTGGAAGGACGCGCTATTTGTTTACATCC
ATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCAG
TTCATGTACCTTTATCTTTAGAGGCGCAAGCGGAGGCTCGTTTACTTATG
TTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCCATTTCCGT
ACCGACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGTGGGAATC
GTCGAGGTATTTGTGCGAATAGGTATAATCCATGGAATCGAAAAAGCTAT
CAAAATGAAAGAATTGACGATAATAACTATAAGTCTACAAGGGAGCCTTT
TTTTTGTAATTCCTATGATGCGATTGGAGCTTATAGGCAGAAAAGAATCA
ATTTAGATAGTCCTTTGTGGCTCCGGTGGCGACTAGAGCAATGCGTTATT
GCTTCAAGAGAAGCTCCCATCGAAGTTCACTATGAATCTTTGGGTACCTA
TCATGAGATTTATGGACATTATCTAATAGTAAGAAGTTTAAAAAAAAAAA
TTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTACCGA
GAAATCGAAGAAGCTATACAAGGGTTTTTTCGGGCCTACTCATATGATAC
CCAATCATATGGTATCTAA back to topCoding sequence (CDS) from alignment at NC_023215:21548..24366- >NC_023215.1-rpoC1.m13 ID=NC_023215.1-rpoC1.m13|Name=rpoC1|organism=Gossypium herbaceum|type=CDS|length=2070bp|location=Sequence derived from alignment at NC_023215:21548..24366- (Gossypium herbaceum)
ATGATCGACCGATATAAACATCAACAACTCCGAATTGGATCAGTTTCTCC
CCAACAAATAAGTGCTTGGGCCAAGAAAATCCTACCTAATGGAGAAACCG
TTGGAGAGGTGACAAAACCCTATACTTTTCATTACAAAACCAATAAACCG
GAAAAGGATGGATTATTTTGTGAAAGAATTTTTGGACCTATAAAAAGTGG
AATTTGCGCTTGTGGAAATTATCGAGTAATTGGAAATCAAAAGGAGGGCC
CTAAATTTTGTGAACAATGCGGAGTTGAATTTGTTGATTCTCGGATACGA
AGATATCAAATGGGATACATAAGGCTGGCATGTCCAGTAACTCATGTATG
GTATTTGAAACGCCTTCCTAGTTATATCGCCAATCTTTTAGACAAACCTC
TTAAAGAATTAGAGGGTCTAGTATACTGCGATGTGTATCCTAATTTTTCT
TTTGCTAGGCCCATCGCTAAAAAACCTACTTTCTTACGATTACGAGGTTC
ATTCGAATATGAAATTCAATCCTGGAAATACAGTATCCCACTTTTTTTTA
CTACCCAAGGTTTCGATACATTTCGAAGTCGCGAAATTTCTACCGGAGCA
GGTGCTATTCGAGAACAATTAGCCGATCTAGATTTGCGAATTCTTATCGA
TTATTCGGTGGTAGAATGGAAAGAATTAGGAGAAGAAGGCCTCACGGGTA
ATGAATGGGAAGATCGAAAAATTGGAAGAAGAAAGGATTTTTTGGTTAGA
CGCATGGAATTGGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATG
GATGGTTTTATGTCTATTACCGGTTCTTCCTCCCGAGTTGAGACCGATCA
TTCAGATAGATGGGGGTAAACTAATGAGTTCGGATATTAATGAACTCTAT
AGAAGAGTTATCTATCGAAATAATACTCTTACCGATCTATTAACAACAAG
TAGATCTACGCCAGGGGAATTAGTAATGTGTCAGGAAAAATTAGTACAAG
AAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGG
GACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGCAA
AGAGGGAAGATTTCGCGAGACTTTGCTTGGCAAACGAGTCGATTATTCGG
GACGTTCTGTCATTGTTGTTGGCCCCTCACTTTCATTACATCGCTGTGGA
TTGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGCGG
TCTAATTAGACAACATCTTGCTCCGAACATAGGAGTTGCTAAGAGTAAAA
TTCGGGAAAAAGGGCCGATTGTATGGGAAATACTGCAAGAAGTTATGCGG
GGACATCCTGTATTGCTGAATAGAGCGCCTACTCTGCATAGATTAGGTAT
ACAGGCATTCCAACCTATTTTAGTGGAAGGACGCGCTATTTGTTTACATC
CATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCA
GTTCATGTACCTTTATCTTTAGAGGCGCAAGCGGAGGCTCGTTTACTTAT
GTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCCATTTCCG
TACCGACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGTGGGAAT
CGTCGAGGTATTTGTGCGAATAGGTATAATCCATGGAATCGAAAAAGCTA
TCAAAATGAAAGAATTGACGATAATAACTATAAGTCTACAAGGGAGCCTT
TTTTTTGTAATTCCTATGATGCGATTGGAGCTTATAGGCAGAAAAGAATC
AATTTAGATAGTCCTTTGTGGCTCCGGTGGCGACTAGAGCAATGCGTTAT
TGCTTCAAGAGAAGCTCCCATCGAAGTTCACTATGAATCTTTGGGTACCT
ATCATGAGATTTATGGACATTATCTAATAGTAAGAAGTTTAAAAAAAAAA
ATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTACCG
AGAAATCGAAGAAGCTATACAAGGGTTTTTTCGGGCCTACTCATATGATA
CCCAATCATATGGTATCTAA back to top
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