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Overview
| Name | rpoC1 |
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| Unique Name | HQ325742.1-rpoC1.m13 |
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| Type | mRNA |
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| Organism | Gossypium herbaceum (Cotton (G. herbaceum)) |
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Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
This mRNA is associated with the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| HQ325742 | region | HQ325742:21613..24423 - |
Properties
| Property Name | Value |
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| Product | RNA polymerase beta' subunit |
| Source | genbank |
Sequences
The
following sequences are available for this feature:
mRNA sequence >HQ325742.1-rpoC1.m13 ID=HQ325742.1-rpoC1.m13|Name=rpoC1|organism=Gossypium herbaceum|type=mRNA|length=2058bp
atgatcgaccgatataaacatcaacaactccgaattggatcagtttctcc
ccaacaaataagtgcttgggccaagaaaatcctacctaatggagaaaccg
ttggagaggtgacaaaaccctatacttttcattacaaaaccaataaaccg
gaaaaggatggattattttgtgaaagaatttttggacctataaaaagtgg
aatttgcgcttgtggaaattatcgagtaattggaaatcaaaaggagggcc
ctaaattttgtgaacaatgcggagttgaatttgttgattctcggatacga
agatatcaaatgggatacataaggctggcatgtccagtaactcatgtatg
gtatttgaaacgtcttcctagttatatcgccaatcttttagacaaacctc
ttaaagaattagagggtctagtatactgcgatttttcttttgctaggccc
atcgctaaaaaacctactttcttacgattacgaggttcattcgaatatga
aattcaatcctggaaatacagtatcccacttttttttactacccaaggtt
tcgatacatttcgaagtcgcgaaatttctaccggagcaggtgctattcga
gaacaattagccgatctagatttgcgaattcttatcgattattcggtggt
agaatggaaagaattaggagaagaaggcctcacgggtaatgaatgggaag
atcgaaaaattggaagaagaaaggattttttggttagacgcatggaattg
gctaagcattttattcgaacaaatatagaaccagaatggatggttttatg
tctattaccggttcttcctcccgagttgagaccgatcattcagatagatg
ggggtaaactaatgagttcggatattaatgaactctatagaagagttatc
tatcgaaataatactcttaccgatctattaacaacaagtagatctacgcc
aggggaattagtaatgtgtcaggaaaaattggtacaagaagccgtggata
cacttcttgataatggaatccgcggacaaccaatgagggacggtcataat
aaggtttacaagtcgttttcagatgtaattgaaggcaaagagggaagatt
tcgcgagactttgcttggcaaacgagtcgattattcgggacgttctgtca
ttgttgttggcccctcactttcattacatcgctgtggattgcctcgcgaa
atagcaatagagcttttccagacatttgtaattcgcggtctaattagaca
acatcttgctccgaacataggagttgctaagagtaaaattcgggaaaaag
ggccgattgtatgggaaatactgcaagaagttatgcggggacatcctgta
ttgctgaatagagcgcctactctgcatagattaggtatacaggcattcca
acctattttagtggaaggacgcgctatttgtttacatccattagtttgta
agggattcaatgcagactttgatggggatcaaatggcagttcatgtacct
ttatctttagaggcgcaagcggaggctcgtttacttatgttttctcatat
gaatctcttgtctccagctattggggatcccatttccgtacctactcaag
atatgcttattgggctctatgtattaacgagtgggaatcgtcgaggtatt
tgtgcgaataggtataatccatggaatcgaaaaagctatcaaaatgaaag
aattgacgataataactataagtctacaagggagccttttttttgtaatt
cctatgatgcgattggagcttataggcagaaaagaatcaatttagatagt
cctttgtggctccggtggcgactagagcaatgcgttattgcttcaagaga
agctcccatcgaagttcactatgaatcttcgggtacctatcatgagattt
atggacattatctaatagtaagaagtttaaaaaaaaaaattctttgtata
tacattcgaaccactgttggtcatatttctctttaccgagaaatcgaaga
agctatacaagggttttttcgggcctactcatatgatacccaatcatatg
gtatctaa back to topprotein sequence of rpoC1 >HQ325742.1-rpoC1.p13 ID=HQ325742.1-rpoC1.p13|Name=rpoC1|organism=Gossypium herbaceum|type=polypeptide|length=685bp
MIDRYKHQQLRIGSVSPQQISAWAKKILPNGETVGEVTKPYTFHYKTNKP
EKDGLFCERIFGPIKSGICACGNYRVIGNQKEGPKFCEQCGVEFVDSRIR
RYQMGYIRLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFARP
IAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRSREISTGAGAIR
EQLADLDLRILIDYSVVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMEL
AKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHN
KVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE
IAIELFQTFVIRGLIRQHLAPNIGVAKSKIREKGPIVWEILQEVMRGHPV
LLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVP
LSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI
CANRYNPWNRKSYQNERIDDNNYKSTREPFFCNSYDAIGAYRQKRINLDS
PLWLRWRLEQCVIASREAPIEVHYESSGTYHEIYGHYLIVRSLKKKILCI
YIRTTVGHISLYREIEEAIQGFFRAYSYDTQSYGI back to topmRNA from alignment at HQ325742:21613..24423- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >HQ325742.1-rpoC1.m13 ID=HQ325742.1-rpoC1.m13|Name=rpoC1|organism=Gossypium herbaceum|type=mRNA|length=2811bp|location=Sequence derived from alignment at HQ325742:21613..24423- (Gossypium herbaceum)
ATGATCGACCGATATAAACATCAACAACTCCGAATTGGATCAGTTTCTCC
CCAACAAATAAGTGCTTGGGCCAAGAAAATCCTACCTAATGGAGAAACCG
TTGGAGAGGTGACAAAACCCTATACTTTTCATTACAAAACCAATAAACCG
GAAAAGGATGGATTATTTTGTGAAAGAATTTTTGGACCTATAAAAAGTGG
AATTTGCGCTTGTGGAAATTATCGAGTAATTGGAAATCAAAAGGAGGGCC
CTAAATTTTGTGAACAATGCGGAGTTGAATTTGTTGATTCTCGGATACGA
AGATATCAAATGGGATACATAAGGCTGGCATGTCCAGTAACTCATGTATG
GTATTTGAAACGTCTTCCTAGTTATATCGCCAATCTTTTAGACAAACCTC
TTAAAGAATTAGAGGGTCTAGTATACTGCGATGTGTGATTTGATCGAAAT
TATTATTTTACAGATTAGGAATGAGAAACTGTCATCCCATTCAATCGAAT
TGGGATGCCCTGGATCTGACATGTCTCTTGGGAAGAGTAACATGAAGCTC
AGAATTATGGGCGTATTCAATACTCCCAAATAAAAAGGGAATTGGTCTAT
GGTCGAGTCAGTAAAAATAAATAACTAGGAATTTTGAGTTGTACCTCGTG
AAAAAAAGACTTCTTTTTTTGTGGAATTAACCGTTCTCATTTCTTTTAGT
TCTTTTAGAAAGAAATGAAATTATGTTCAAGGAAACAAATATGTCATGGT
TGCAGGAGTCTATACATCGCATATAGGCTTAGGCTTTAAGTTAAGGGCAT
CGTGGTATAATCGTCGAGGTACCGCAGGACCTAAGAGATCGAATGGAAGG
GTACATAGACAAGTAAATCCCTTATGACACTCCTTTAATTTAAGAGGATT
CAGCATTCGAGGGGAAGTAGACTACTCAAGAATTTCACATTTCATTTATG
TCCTAATTTTGAATTGAATAAAGAATTAAGAAAATCTAAATCAATAAAAG
AAGAATCAATCAATGAAATGTTTCTTGGAACTTGAGTAAAGAGTAGACCT
TTTTGGGGGGGTTCTAGAATTTGAAAGCGAGAACTCCTTTACTTTATCTT
TATTTGGTGTAACTACTTGAGCCGGATGAGAGGAAACTCTCATGTCCGAT
TTTGAGGGGGGGATCCCGCAGGGCCCTATCCTAATTTTTCTTTTGCTAGG
CCCATCGCTAAAAAACCTACTTTCTTACGATTACGAGGTTCATTCGAATA
TGAAATTCAATCCTGGAAATACAGTATCCCACTTTTTTTTACTACCCAAG
GTTTCGATACATTTCGAAGTCGCGAAATTTCTACCGGAGCAGGTGCTATT
CGAGAACAATTAGCCGATCTAGATTTGCGAATTCTTATCGATTATTCGGT
GGTAGAATGGAAAGAATTAGGAGAAGAAGGCCTCACGGGTAATGAATGGG
AAGATCGAAAAATTGGAAGAAGAAAGGATTTTTTGGTTAGACGCATGGAA
TTGGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTT
ATGTCTATTACCGGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAG
ATGGGGGTAAACTAATGAGTTCGGATATTAATGAACTCTATAGAAGAGTT
ATCTATCGAAATAATACTCTTACCGATCTATTAACAACAAGTAGATCTAC
GCCAGGGGAATTAGTAATGTGTCAGGAAAAATTGGTACAAGAAGCCGTGG
ATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGACGGTCAT
AATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGCAAAGAGGGAAG
ATTTCGCGAGACTTTGCTTGGCAAACGAGTCGATTATTCGGGACGTTCTG
TCATTGTTGTTGGCCCCTCACTTTCATTACATCGCTGTGGATTGCCTCGC
GAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGCGGTCTAATTAG
ACAACATCTTGCTCCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAA
AAGGGCCGATTGTATGGGAAATACTGCAAGAAGTTATGCGGGGACATCCT
GTATTGCTGAATAGAGCGCCTACTCTGCATAGATTAGGTATACAGGCATT
CCAACCTATTTTAGTGGAAGGACGCGCTATTTGTTTACATCCATTAGTTT
GTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCAGTTCATGTA
CCTTTATCTTTAGAGGCGCAAGCGGAGGCTCGTTTACTTATGTTTTCTCA
TATGAATCTCTTGTCTCCAGCTATTGGGGATCCCATTTCCGTACCTACTC
AAGATATGCTTATTGGGCTCTATGTATTAACGAGTGGGAATCGTCGAGGT
ATTTGTGCGAATAGGTATAATCCATGGAATCGAAAAAGCTATCAAAATGA
AAGAATTGACGATAATAACTATAAGTCTACAAGGGAGCCTTTTTTTTGTA
ATTCCTATGATGCGATTGGAGCTTATAGGCAGAAAAGAATCAATTTAGAT
AGTCCTTTGTGGCTCCGGTGGCGACTAGAGCAATGCGTTATTGCTTCAAG
AGAAGCTCCCATCGAAGTTCACTATGAATCTTCGGGTACCTATCATGAGA
TTTATGGACATTATCTAATAGTAAGAAGTTTAAAAAAAAAAATTCTTTGT
ATATACATTCGAACCACTGTTGGTCATATTTCTCTTTACCGAGAAATCGA
AGAAGCTATACAAGGGTTTTTTCGGGCCTACTCATATGATACCCAATCAT
ATGGTATCTAA back to topCoding sequence (CDS) from alignment at HQ325742:21613..24423- >HQ325742.1-rpoC1.m13 ID=HQ325742.1-rpoC1.m13|Name=rpoC1|organism=Gossypium herbaceum|type=CDS|length=2058bp|location=Sequence derived from alignment at HQ325742:21613..24423- (Gossypium herbaceum)
ATGATCGACCGATATAAACATCAACAACTCCGAATTGGATCAGTTTCTCC
CCAACAAATAAGTGCTTGGGCCAAGAAAATCCTACCTAATGGAGAAACCG
TTGGAGAGGTGACAAAACCCTATACTTTTCATTACAAAACCAATAAACCG
GAAAAGGATGGATTATTTTGTGAAAGAATTTTTGGACCTATAAAAAGTGG
AATTTGCGCTTGTGGAAATTATCGAGTAATTGGAAATCAAAAGGAGGGCC
CTAAATTTTGTGAACAATGCGGAGTTGAATTTGTTGATTCTCGGATACGA
AGATATCAAATGGGATACATAAGGCTGGCATGTCCAGTAACTCATGTATG
GTATTTGAAACGTCTTCCTAGTTATATCGCCAATCTTTTAGACAAACCTC
TTAAAGAATTAGAGGGTCTAGTATACTGCGATTTTTCTTTTGCTAGGCCC
ATCGCTAAAAAACCTACTTTCTTACGATTACGAGGTTCATTCGAATATGA
AATTCAATCCTGGAAATACAGTATCCCACTTTTTTTTACTACCCAAGGTT
TCGATACATTTCGAAGTCGCGAAATTTCTACCGGAGCAGGTGCTATTCGA
GAACAATTAGCCGATCTAGATTTGCGAATTCTTATCGATTATTCGGTGGT
AGAATGGAAAGAATTAGGAGAAGAAGGCCTCACGGGTAATGAATGGGAAG
ATCGAAAAATTGGAAGAAGAAAGGATTTTTTGGTTAGACGCATGGAATTG
GCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTATG
TCTATTACCGGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATG
GGGGTAAACTAATGAGTTCGGATATTAATGAACTCTATAGAAGAGTTATC
TATCGAAATAATACTCTTACCGATCTATTAACAACAAGTAGATCTACGCC
AGGGGAATTAGTAATGTGTCAGGAAAAATTGGTACAAGAAGCCGTGGATA
CACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGACGGTCATAAT
AAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGCAAAGAGGGAAGATT
TCGCGAGACTTTGCTTGGCAAACGAGTCGATTATTCGGGACGTTCTGTCA
TTGTTGTTGGCCCCTCACTTTCATTACATCGCTGTGGATTGCCTCGCGAA
ATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGCGGTCTAATTAGACA
ACATCTTGCTCCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAG
GGCCGATTGTATGGGAAATACTGCAAGAAGTTATGCGGGGACATCCTGTA
TTGCTGAATAGAGCGCCTACTCTGCATAGATTAGGTATACAGGCATTCCA
ACCTATTTTAGTGGAAGGACGCGCTATTTGTTTACATCCATTAGTTTGTA
AGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCAGTTCATGTACCT
TTATCTTTAGAGGCGCAAGCGGAGGCTCGTTTACTTATGTTTTCTCATAT
GAATCTCTTGTCTCCAGCTATTGGGGATCCCATTTCCGTACCTACTCAAG
ATATGCTTATTGGGCTCTATGTATTAACGAGTGGGAATCGTCGAGGTATT
TGTGCGAATAGGTATAATCCATGGAATCGAAAAAGCTATCAAAATGAAAG
AATTGACGATAATAACTATAAGTCTACAAGGGAGCCTTTTTTTTGTAATT
CCTATGATGCGATTGGAGCTTATAGGCAGAAAAGAATCAATTTAGATAGT
CCTTTGTGGCTCCGGTGGCGACTAGAGCAATGCGTTATTGCTTCAAGAGA
AGCTCCCATCGAAGTTCACTATGAATCTTCGGGTACCTATCATGAGATTT
ATGGACATTATCTAATAGTAAGAAGTTTAAAAAAAAAAATTCTTTGTATA
TACATTCGAACCACTGTTGGTCATATTTCTCTTTACCGAGAAATCGAAGA
AGCTATACAAGGGTTTTTTCGGGCCTACTCATATGATACCCAATCATATG
GTATCTAA back to top
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